RNA id: XM_043232334.1


Basic Information

Item Value
RNA id XM_043232334.1
length 1876
RNA type mRNA
GC content 0.50
exon number 3
gene id ptger1c
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7801296 ~ 7807762 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTGCCCGGAGCACATGGGAGAAGTACTGTCGCTGCTGAGATACACAGGAGGAACACAAAGGGACGCTGGCAATAGCAGATGAATCCCTTTCTACTGACCACAGTCGCAAAAAAGCTCCCAGCAGGAGCAACCGTGAAGAGAAACACAGCTCTCTGACTGTCACGCCATGGATCTCCTGTTCACCTCATCCTTCCCTGCCTCGTGCCAGAACTCCAGCAATCTCACAGCTCTCTGTCCCGACAACCAAACGGCAAACTCAACGCCTCCAGCTCTGGTTAACCCTCCAGGGTTTGGGATGTCCTACTTCACCATGACCCTCGGCGCACTCTCGAATCTGACCGCGCTAGCAATCCTGGCCCATTCCTACGCCAGTTTCCGACGGCGGGCCAAAGTGCCGTTTCTGCTGCTGGCTTCAGCCCTGCTTTTCAGCGACCTGGCCGGTCATGTGATCACGGGGTCTTTGGCGCTTCACCTCCATCTTGGGAGGCTGAAGCATCACGAGGCGGCAGTAGTAGCGGAGCCCCCACAGGTCTACTGCAAATTATTTGGAGGTTGCATGGTGTTTTTTGGTCTCTGCCCTCTGCTTCTAGGCAGCGCGATGGCGGTGGAGCGCTGCATAGGCATAACACAACCTCTCCTGCACCCGGCGGTGGTCACAATGACACGTGTCCGCCTCACCGTGCTGGTCATCACCTTCACGGCTCTCACTTTGGCGGGACTCCCTCTGATAAACGTGGGCAACTACAAAGCACAGTTCCCCGGCACCTGGTGTTTCTTACCTGTGAACGGGCCTCTCTCCATCGCTGACGCCAGCCTCGCTCTGGCTTTTTCCACACTGGGGCTCATAACACTGACCGTCTCAGTTGTGTCCAACACTGTAAGTGGGCTGAAGTTGCTCCAGGCGAGGTTTAAGGACCGGTGCGTTAAGTCAAGCGTCACTCGGAGACACGGGTCCTTCTCATCTTCCTCTCTGCGCTCCCTGGATGTGGAGATGATGACACAGCTGGCCGCGATAACAGTGGTCTCCTGTCTTTGTTGGAGTCCTTTTCTTATTTACATCCTCATATCCGTTAGCAGGTTTTATGAAGGAATCAGAAGGCCGAGGCGCCAGTGTGAGAAGCTGCTGCTCTTGGCTCTGCGCTTGGCGAGCTGGAACCAGATCATGGATCCGTGGGTCTACATCCTCCTCCGGAGGGCGGTTCTGCGCAGACTGCTCCAGCTGCTGCAGCCGGAGAGAGTCGGCCTTACGCAGAGCAGCTCCTACAGAGACTCGCACAGAAAGCAAATTAGTTTACACTGATGATCACACACATCTATAAGCGTTTATAAAAAGAAACTGTGAAAAAtgattgtgtgtgcgtgtgtgtgtgtgtgtcctggtTTAACTATACTTGTGAGGACTTAAATATCCTCACTTATATAATGAAAGATCAGAACAACCCACTAGTGAGGACATTTGACAGGCTTATAAATCAgccaaaagtttttgttttggtgtggATCTAGTGCTCTGAATATGTTTCTGTGATGGGTAGGGATAGGCGGGATAGGCGGGTTAGGGGATAGAAAATACTGTTAACCTGctagaaaaacaacagaagtctATGCAATGTCCTCACTGTGATAGCAAAACAAacgtgagcgtgtgtgtgtgtgtgtgtgtgtgtgtaaagtaagtaaaataaaaggaagGAAGAAGTGTAATTTGAAACAGAGCATTTTCATGACTACTCTTAAAAGGTGCATTTTTGTAAtgatatcaaattgaatttcatttttcatgatgAAGCTAATTTCTGAGTGGTGAAGTATAACATGAATGCTAGCTTTACTGGTTCGCAAAATAATTGCAGTTTTGTTACTTCatccaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function
GO:0004958 prostaglandin F receptor activity molecular_function
GO:0004960 thromboxane receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26730 lncRNA upstream 73112 7671703 ~ 7728184 (+) True G17912
TU26695 lncRNA upstream 209770 7585473 ~ 7591526 (+) False LOC122331592
TU26696 lncRNA upstream 209770 7585473 ~ 7591526 (+) True LOC122331592
TU26666 lncRNA upstream 391756 7409238 ~ 7409540 (+) True G17867
TU26661 lncRNA upstream 402831 7398239 ~ 7398465 (+) True G17862
TU26754 lncRNA downstream 12548 7820310 ~ 7820640 (+) False slc27a1a
TU26758 lncRNA downstream 17424 7825186 ~ 7825842 (+) True G17928
TU26760 lncRNA downstream 21722 7829484 ~ 7829860 (+) True G17930
TU26763 lncRNA downstream 33281 7841043 ~ 7841669 (+) False LOC122341274
TU26765 lncRNA downstream 34577 7842339 ~ 7842968 (+) True G17934
XM_043232298.1 mRNA upstream 4643 7786116 ~ 7796653 (+) True LOC122334406
XM_043235708.1 mRNA upstream 75777 7656032 ~ 7725519 (+) False baiap2a
XM_043232314.1 mRNA downstream 481 7808243 ~ 7821078 (+) True slc27a1a
XM_043234650.1 mRNA downstream 31194 7838956 ~ 7841570 (+) True LOC122341274
XM_043234654.1 mRNA downstream 152315 7960077 ~ 7962976 (+) True LOC122341279
XM_043229244.1 mRNA downstream 166781 7974543 ~ 7977890 (+) True LOC122331730
XM_043234655.1 mRNA downstream 342981 8150743 ~ 8152894 (+) True LOC122341282
XR_006250506.1 other upstream 75777 7656032 ~ 7725519 (+) False baiap2a
TU26266 other upstream 1244546 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 1244546 6504915 ~ 6556750 (+) True G17590
TU26040 other upstream 1606274 6192740 ~ 6195022 (+) False LOC122341437
unassigned_transcript_276 other downstream 141999 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 142042 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 143092 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 152309 7960071 ~ 7962295 (+) False LOC122341279
TU26834 other downstream 156987 7964749 ~ 7966194 (+) True G17988

Expression Profile