RNA id: XM_043232377.1


Basic Information

Item Value
RNA id XM_043232377.1
length 3246
RNA type mRNA
GC content 0.46
exon number 15
gene id sema4e
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4773535 ~ 4787749 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAGCAGCTTAATGCTTTCTCGCACAAAGCAGAAGACACCATGAGctccattcactgcagagccaCGACTTTCAACACACTCTGCTGCCTTTGAGACTTAGACaacttttgatttgttttgcagtgGAGGACTGgaacgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaggaggaACCATTCATGCGAGCACAGGAGAACTGAGAGACTTACTGAGAATTTGGTTGCATGatgGCTTCACAGGGTTCTTTGCTGAAGAACGTTCTTTGCAGCTAAAGTCATATATCTCAGTATGGAAGCGTTTCGGACCGAAGCAAGAGAGAAGGCAATGATGAGGAAACTCTGACAGACAGACGACACAGGGATCTAGCACTTTCACCGTCTTTAGACCAATATCGctgaaagattttttatttatttttttttattggaatgATGTTTCCGCTGGCTGTGCTCTGTATTTTTTACATCTGGAGTCAAGCGACGCCGACCGGCGGATTGGGATCGACACCGGATGCCATGCCTCGCAAAACAGTGCCTGCCAGTAGTAATGGGGGACATTTGTTTCGTGAGGAGGGTGTTTGGAACTATACCACTATGCTCCTGAGGGAAGATTTTAACATGCTCATCCTGGGTGCCAGAGAGGCTATTTTTGCCCTTGACCTTGATGACATTACAGTCAAAAAGGCCATggtgaATTGGCCAGTCACAAGGAAGGAGCAAAATGACTGTTTATATAAAGGAAAAGATGCTACAaatGAGTGCAGAAATTATATCAGAATTCTTCATAAAAGAAACGATGACAGAATGTATGTTTGTGGAACGAAAGCATTCATCCCTACTTGTGACTATATGTCCTATGCAGATGGTAGTCTGACTTTAGAGGGCAAACAAGAAGATGGGAAGGGAAAATGTCCCTTTGATCCTTTTCAGCGATACACATCAGAGATGGTTGATGGAGTATTGTACTCTGCCACTTCATTGAACTTTCGGGGTTCAGAGCCAATTATGATGCGCAGCTCAGAGGAATCCATACGGACAGAGTTTTCAAGCACCTGGCTCAATGAACCAAATTTTATCCACATGGCCCACATACGGGAGGGAGAATCAAACCCAGATGGGGATGATGACAAGATCTACCTGTTCTTCAGTGAGACAGCAGTGGAATATGACTCCTACACCAAGATGGATGTCTCCCGAGTAGCTCGCGTGTGCAAGGGAGACTTGGGTGGGCAGAGAACACTGCAGAGGAAGTGGACTTCTTTTCTAAAAGCAAGGCTCGATTGTCCCGTTCCAAACAACAACCTGCCACTTCTAGTCCAGGATGTTTTCCACTTGTGCCCCGGCGACTGGACCACCTGCATGTTTTATGCTGTCTTTACCCCGCAATTAGACTCCTCTCAGTACTCTGCGGTATGTGCATACAAAATTGAAGACATCAAGACCGTATTCTCAAAGGGCAAGTTTAAGGCTCCTGTTACCGTCGAGACATCGTTTGTGAAGTGGGTGATGTACTCGGGTGATGTCCCCGATCCCCGACCCGGAGCATGCATTGATAAGCATGCCAGAGACATGGGTCTCACCAAAACTCTGGATCTGCCAGATAAAACCTTGCAATTTATTAAAGACAAGCCTCTGATGGACCAGGCCGTCACGGCCCTTGGAGACAAACCCCTGCTGGTGAAGAGAGGTCCTGCTTTCACCAGAATTGTGGTGTCCACCGCGACAGCCTTGGATGGGACCAGCCATCAAGTCATGTTCATTGGCACAAAGAGCGGTTCGGTGCTGAAAGCAGTGAATTATGATGGCGAGATGGTCATTATGGAAGAGATTCAGCTATTTGGGGCCTCAGAGCCAGTGAAGATACTCCGACTTTCCAATAGCAAACTGTACGTGGGTTCGAATGTGGGCGTGGTTCAGCTGTCCATCAATGAATGTGGGCGGTACCGCACATGTCTGGACTGTGTTCTGGCCAGGGATCCGTACTGTGGCTGGGACCTCAGTGCTGGCCAATGCTCTACCATAAACGGCACACACAGAACCAgCACTGTGATTCAGAGTTTGAGTTCTGGCGATGCCAGCCAATGTCCACAAAAAGATGACAGTGAGTCAGTCAGCATTTCGTTTTTTGGCGGCAATACCGTGAAGCTGTGGTGTCAGCCTTATTCCAACCTGGCACAGGTTGAGTGGCAGCTGAACGGACATCCAGTCAAAGCTTCAAACGCCTTTCAGATCCTCTCCGATAGCCTGATGATCTTTAACGCCTCCGCAGACGCCAGCGGCCGCTACACCTGCAGTTCTGTAGAGGGGAATTACAAAACCCAGCACGTAGCATATGATCTAAAAATGTGGTCAGTGTCCGAGACTACGGCATTACTACACAACGtcaaggaaaaagaaaacacacttgTGGCCATGCTGGTGTTGTTGTCACTAATTCTAGCTATGCTAGTAATTTGGAACCTGTACAAAGGGCATTTTCCTTCGCCGTTTTGCCACTGGAGGGTAAAGGACACCAACAACAGGCGTGAACAAAGTCTGCCTCCAGAACATAAAATAGCATCGTCGACTGTGAACttaaacagcaacaacaaccaTGTGAACAACCAGAGGTACTCAAGCTCTGGAGAAACGGACAGACTCGCAACCACTATTGGTTCCTCAGGTCAGGTCACATTGAAATATATAGACGATGAATCTGAGATTTGAGCTTTTTATGCGCTGACTTGCTAATGCGGCTAATCGTCATTTATATGCAGACCAAGCCCACTGAGGCCAGCTCTTCTTCTGCAGCTGTTAACTCTTGACTAAACTGCTATTTGGACCCACTTGACGAATCTATACCTTCTAAATGCCATCGTTCAACCGCCATACTCCAAAAAAAGACACTGCTTCAGACATTTTGCATAGGGTCTGTTTACATTGCAGCTCACTTTGGCTAAGAATCACCAAAGTACTTTTCAAGGACAGTCAAATCACTTGGTGGTCATACTTGCGATGCAACCAGGCAGCTATTTCAGTCATGCAAAGCCAACTCCTATCTACTTGAATGGGGAAATAGCGATATCTTAAAAACTGCTTGGCAATATTTCAAAATTCTAACATGAATTGCCTCATGAATGTTGTTTCATGCGTTAAAATAgtgttacattaaaatgtgctaagtgtttttttttttttttattctgatgaacacaaaggtagatattttgaaaaatgtttataaccaggctgt

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25295 lncRNA upstream 118034 4575772 ~ 4657048 (+) True G16982
TU25320 lncRNA upstream 120828 4604054 ~ 4654254 (+) True G16991
TU25318 lncRNA upstream 124444 4602024 ~ 4650638 (+) True G16990
XR_006250421.1 lncRNA upstream 125911 4647091 ~ 4649171 (+) True LOC122341099
TU25309 lncRNA upstream 145419 4595665 ~ 4629663 (+) False G16982
TU25338 lncRNA downstream 7855 4792546 ~ 4794034 (+) True G17003
TU25365 lncRNA downstream 80517 4865208 ~ 4867318 (+) True G17018
TU25289 lncRNA downstream 114148 4898839 ~ 4903279 (+) True LOC122333539
XR_006248639.1 lncRNA downstream 114806 4899497 ~ 4902880 (+) False LOC122333539
XR_006248640.1 lncRNA downstream 115733 4900424 ~ 4902886 (+) False LOC122333539
XM_043232408.1 mRNA upstream 1213 4763417 ~ 4773869 (+) True stap2a
XM_043232416.1 mRNA upstream 2446 4763416 ~ 4772636 (+) False stap2a
XM_043235482.1 mRNA upstream 13785 4744833 ~ 4761297 (+) True sh3gl1a
XM_043235483.1 mRNA upstream 13785 4744834 ~ 4761297 (+) False sh3gl1a
XM_043235718.1 mRNA upstream 33655 4730428 ~ 4741427 (+) True LOC122341974
XM_043232430.1 mRNA downstream 10751 4795442 ~ 4799150 (+) True LOC122334471
XM_043229569.1 mRNA downstream 16104 4800795 ~ 4812469 (+) True LOC122332276
XM_043229580.1 mRNA downstream 28248 4812939 ~ 4820656 (+) False wdr48b
XM_043229598.1 mRNA downstream 28284 4812975 ~ 4820656 (+) True wdr48b
XM_043229589.1 mRNA downstream 28296 4812987 ~ 4820656 (+) False wdr48b
TU25278 other upstream 228515 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 241784 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 288618 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 315947 4458698 ~ 4459135 (+) False G16979
TU25239 other upstream 336881 4437288 ~ 4438201 (+) True G16955
TU25292 other downstream 120965 4905656 ~ 4906966 (+) True G16981
XR_006248137.1 other downstream 772317 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 812408 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1313510 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 1408049 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile