RNA id: XM_043232585.1


Basic Information

Item Value
RNA id XM_043232585.1
length 3934
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC122334574
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27574258 ~ 28072577 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGTGACGTCATATCCCTGGGCGTCCTTAAAGTGAAACAGAAAGTGATCGTCTCAGACACTTGCGCAGAACCATAATTGTAACAAATATCTTCACATGTCACGACTGAAGATTGGAGAGACAGGAGCAGAATAAAAATGAGTGCTTATAAACTGAGTATGTCTGAGGAGAGAGATGAGGAGTCTGCTGTTGACGCTCGCATACCAGCATCTTCAGGATTCAGCTTTGTGTCTATGAAGAGTAACAACTCCATGCATAAGCCCCCCGATCTCAGTGATGTTGACTCTCAGAGATCTGCATCTTCAGGAttcagctgtgtgtctatgaagagtAACAACTCCATGCATAAGCCCCCCGATCTCAGTGATGTTGACTCTCAGAGATCTGCATCTTCAAGAttcagctgtgtgtctatgaagagtAACAACTCCATGTATGAGCCCCCCGATCTCAGTGATGTTGACTCTCAGAGACTGGCATCTTCAGGAttcagctgtgtgtctatgaagagtAACAACTCCATGCATAAGCCCCCCGATCTCAGGGATGGACCTGCTGTGAACTTTGTtgctaccagcagaaagagaaagagagcagccTCTCCACAGCAGCCCCCTGATCTCAGTCATAAATCAGCACACCTTGATCCTGTatGTATGTCCTCTCAGACCTTCATATCCTCGTACGGTCAGAACCACTTCAGTCATTCTTACACAGAAACAGATCTGCAGCTCAATTCTCATCAACCAGTACTTAATGATCTACAGAGAGTCAAAGAGCAGCACAAAACCAGCATGAAGAAAAAGTACGAAAGCTTATTTGAGGGAGTCAAACTACAAGAGAATCAAACCCTCCTGAACAGGATTTACACACAGCTGTACATcatagagggagagagtgaaggagtGAATGAAGAGCATGAGGTGCTACAGATTGAGAAAAGTTACAGGATACTTCAAGACACTCCAATTAACTGCAATGACATCTTTAATCCTTCACCTGAACCAGCAGATGAGGAGATTAGAAGAgagatcaaaaacaaaataaagactgttcttactaaaggcatcgctggaattggaaaaactgtctctgtgcagaagttcattctggactgggcAGAGGGAAATgccaatcaggatgtagatttcatgtttgttcttacatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctGGACTTTCATCCTGAACTTCAAGATCTGGACCCAAAGATTTACAATGAATGtaaagttgtgttcatctttgatggtcttgATGAAAGCAGAATCTCACTGATGTATTCAGACATTCAGAAAGTTTCTGATGTGGCTGAGATTTCATCATTGGGTCTGCTGATGTCAAACCTCATGAAAGGAGatctgcttccctctgctctcatctggatcaccaccagaccagcagcagccaatcagatcccctCTGACTACATAAACCGTATGACAGAAATTCAGGGATTCAATGACcctcagaaggaggaatatttcaggaagaAAATCAGTGATGAGCATCAAGCCAGCAGAATCATCTCAAATATCAGAAGAGCAAGAAGCCTCCacatcatgtgtcacatccccgtcttctgctggatctcagccactGTGCTTCAAAACATCCTGAACCAAGATCACAGTGCAGAAATCCCTCAAACTCTAACTGAAATGTACATCTACTTCCTGATCATTCAAACAAACATGAGGAACCAGAAGTATGAAAAAAGACATCCAGAGAAACTCCTGAAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAACTGGCTTTCAATCAGCTGATGAAGGGCAATGTGATGTTTTATGAGGAGGATCTGAGAGAGAGCGGCATAGATGTCACTGATGCTTCAGTGTATTCTGGGATCTGCACTGAGATCTTTAGAGAGGAGTCTGTGATTCATCAAAGGAAGGTTTACAGCTTTGTGCATCTCAGCTTTCAAGAGTTTTTTGCagcactgtatttgttttactgttatttacacaaaaacagtGAGGTTCTGAAAATGTTCCTGATAGAAAATTCCAGATTCCACTGTGAGAATGTGGATGTGCTTCTTAAGGGAGCAATGAATAAAGCCTTGGAGAGTAAAAATGGACACCTGGATCTTTTCCTTCGATTTCTTCATGGCATCTCACTGGagtccaatcagagactcttacagGATGTACTGATACACACCCAGAACAACCCAGAGAGTATTAAGAAAATAATCCACAACCTCAAACGAAGTCAAAAAACCAATGTTAGTCCTGAAAGATGGATAAATCTGACACACTGTTTGATTGAGATGAAGGATAACTCAGTTGTTGAGGAAATGCAGGCATTTCTAAActctaacaaaacaaaaaaacgtcttTCTCTTGCACAATGCTCAACTTTGGCAAACATAATCCTGATGTCAGAGGAGGTACTGGATGAGTTTGATCTTAAAAAATTCACCATTAAATCAAAAGGTGGGAGTCAGAGACTGTTACCCGCTCTCAGGAACTCCAGAAAAGCTCTATTAGCAGGCTGTAATCTCACTGGTCAACACTGTGAAATTGTGGCTTCCGCTCTACAATCACCAAACTCAcccctgagagagctggacctaaGTAACAAtcatctgcaggattcaggagggAAGCTGCTCGCTGGTGGACTAAAGAATCCAAACTGTCAACTCAACATACTGagATtatctggctgtatggtgaaAGAGGAAGGTTGTGCCGCTCTGACatcagctctgagttcaaacctTTCAcccctgagagagctggacctgagtaacaatgatcttCAGGATTCAGGAGTCAAACTGCTCGCTgctggactgaagagtccaaactgtaaACTCAACATACTGAGATtatctggctgtatggtgaaAGAGGAAGGTTGTGCCGCTCTGACatcagctctgagttcaaacctttcacacctgagagagctggacctgagtaacaatgatcttCAGGATTCAGGAGTAAAGATACTTTGTGCTGGACTGAAGACTCCAAATCAAATCATCATACTCAGATtatctggctgtatggtgacagcagaaggttgtgctgctctgtcttcagctctgagttcaaactcctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtgaagctgctctctcaAACACTCAAACATCTGGACAAACTCAAtgtgGATCATGGAGGAGAATTCAGGATTACAACAGGACCCCGAAAATatgcctgtgatctcacactggacccaaacacagcaaacactgAACTCTTTCTGTCTGAAGACAACAGGAAGGTGATGAATGTGTTTGAGAGACAGccatatcctgatcatccagacagatttgatcgTTATCCTCAGGTTCTATGTTCAGAGACTCTGATTGGACGCTGTTTCTGGGAGATTGAGTGGAGCAGAGCTGGAGCTGAAATATCAGTGTGTTATAAAGACATCGAGAGGAAAGGAGAGAGTACTGACTGTGTGTTTGGTTATAACCTGAACTCCTGGAGTGTGTCCTGCTCCAATTACGGATTCACTTTTCTTCACAATAATAACTCCACATATATCTCTTCTCCTAAAGACTCCTGTAAGAGAGTAGGAGTGTTTCTGGACGAGTCGAGCggctctctgtccttctacagcgtctctgacacacacacactcacacacttacacacattcacacacacattcactaaaCCTCTACTCGCTGGGTTTAAACTTTATGTCAACTCTTCAGTGTCTCTGTgtcacattaaacattaaacacacacacacacacacacacacactctctctctctcacacacacacacacacacacactctctctctctcacacacacacacacacactctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35653 lncRNA upstream 40435 27530689 ~ 27533823 (+) True G23886
TU35630 lncRNA upstream 99188 27472854 ~ 27475070 (+) True LOC122335648
XR_006248989.1 lncRNA upstream 99215 27473292 ~ 27475043 (+) False LOC122335648
TU35606 lncRNA upstream 110956 27462999 ~ 27463302 (+) True G23869
TU35575 lncRNA upstream 322144 27249425 ~ 27252114 (+) True G23840
TU35690 lncRNA downstream 77757 27686894 ~ 27689858 (+) True G23909
TU35624 lncRNA downstream 95040 27704177 ~ 27816189 (+) False G23873
TU35695 lncRNA downstream 104401 27713538 ~ 27714891 (+) True G23914
TU35697 lncRNA downstream 110048 27719185 ~ 27719656 (+) True G23915
TU35636 lncRNA downstream 125405 27734542 ~ 27800229 (+) False G23878
XM_043232632.1 mRNA upstream 17728 27533844 ~ 27556530 (+) True LOC122334614
XM_043232694.1 mRNA upstream 85901 27475325 ~ 27488357 (+) True LOC122334777
XM_043233293.1 mRNA upstream 114119 27458791 ~ 27460139 (+) True rasd4
XM_043233156.1 mRNA upstream 135415 27435812 ~ 27438843 (+) True LOC122335316
XM_043232716.1 mRNA upstream 188196 27307640 ~ 27386062 (+) True LOC122334820
XM_043233179.1 mRNA downstream 119137 27728274 ~ 27729892 (+) True LOC122335347
XM_043233192.1 mRNA downstream 119187 27728324 ~ 27729892 (+) False LOC122335347
XM_043233185.1 mRNA downstream 119199 27728336 ~ 27729892 (+) False LOC122335347
XM_043233349.1 mRNA downstream 342614 27951751 ~ 27952457 (+) True LOC122335462
XM_043232688.1 mRNA downstream 427283 28036420 ~ 28068099 (+) True LOC122334736
TU35581 other upstream 291852 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 726901 26846723 ~ 26847357 (+) True G23695
TU35299 other upstream 772863 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 906506 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 983678 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 1098176 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1234704 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 1619616 29228753 ~ 29230230 (+) False cenpx

Expression Profile