RNA id: XM_043232698.1


Basic Information

Item Value
RNA id XM_043232698.1
length 3247
RNA type mRNA
GC content 0.45
exon number 20
gene id LOC122334787
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29215127 ~ 29225079 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTCATACACGGCCCATTGTTTGAGAGCCGTGGAGACACACGCTTTATTTATTGTGCTCGCTGTACTTTTAACCGTCCTGTCAGAAGCGCGAAAACGTGCACGCGCCGACCAACACAGTTCTCCAGGCGGCGCTATCGGTCTATTTTCAACTAAAAAGTTCATTAATATCTTCTCTGCGTCTTCCAAACCTGAAATAACGTCTGTACGCGTCGAAATACTGATATTTTGAAGCATGTTTAGTCAGATAAGGTGTGTGTTCCAGGAGAAAGAAGTCATACAGGGTTGAATGAATAGCTGATGATAggaatatattcatttttggggggACCTTTCTgtacttttggacacagaaagtatTTGAATCTGTTTTAGATATGCTTTAAATCAGCTTTATTACAGTCGTTATGGCAATCGAAGCTGCAGTGTCCATTTAcaccatttacatttaaaaacaaaaccttcaGGAGACATGGCCCAACTCAAATTCATACTTTCTTGATAACTTTAGCTATCTGTGAAAACATGACATGGCTGTGAGGTCtgtgctgcttttctttttttaatgaaggcTCCGTTTATGATTTCACATAACTACACGGTCTTCCTATAAAATATTGCCAAACCAagtaatgctaataaaaaaaaaacattttcaagacGTCAGGCTGTTCTTGTTTCTTCCTCTCTGCACGTTGCCTGTGGTTTGTCACTTTGTCTACAGTCAGTCAACTGTGAAAGTATTTCTGGCTCACTTGAAGAATGGATATCGTAGAAGAACCTTTATGCTTTTATACGGTCTAGTTTCTTCTCAGACTGGCTCGGAAACCTTGCTTAGCAGTTGTTTAGACTTTCTGATACGCGGCGCTCTAGAGAGTCTGTCCCAGATCATGGAGACGACTTCCAGTGAAGACGAAGACCGAGAGCTGATTGAGCTGGAGACTACGAGGAGACCACATAGAGCAGTGACCTTCGACCTGGTGCATGCAAACCAAGAAGACGTAGAAGCTCAGCGTTATCATGAGCCCAGACACACGAATGCCCTGCACAGGAACAGCTGGTCCTCTTCAACCCAGAAGGTCCTGTCCTCGATGCCCAGTCGCTCTATCAGATTTAATCAGTCGGCCGCGCTCTCCCGATCCACCCAGACACGAAGAAGACGACCTCTTAGCATCGTGTCCAGCGCAGAGGAGGACGTCTTCAGAGGCCAGCCGGACTTCACCCAAAATGAAGACATGCTAAACAAACTGCAAGATCTGCCAGCGGGCGAACGCGTGCGGGTGTTGCGTGAAATCCCCCTCAGTGTCTCGGAGAAGCGCAAGATCAGAAGCTGGTTTCTCATGTGGGATTCTGGGCTGCCTGTCTCCGCTAACAGAGCTCAGCGCTGCCATGCGTTTGAAACTTGGTTATTGAAGGTGTTGCGTGATGGCTCCTGCCGTGGAGTCTCCCAGAAGAAGTCCATACAGATCTGGCAGGGAGTGTTTAAGACAATCAGCGCTCACTTCGGCACAGGGATTCTGTCCTATTTCATCTTCCTCAGAAAACTTTTATATTACaacatcctcctcttcctcatcacCGGCCTCTTCCTGGTCCTACCACAAATCATATGTCCTCcatcatccaaaaacaaacctgCAGCCTCAGCTGACCTCTGGATGCTTACTGGAATGGGCATTCTTACAAACTCTGTGATGTTTTACGGCCACTACGTCAACTCTACACAGGAAAACTGCAAAGCGTTAAATTACAACATACCGCTGGCGTATATTTTTACTGTCGGAGCTGGCATGTTTATCACATGCGTAATGCTTGTTTACAGCATATCTAAATCACTCGAAAAGAGTTTTCGGGTGTTCAAGACCGCTGGCGACCTGGCTTTAAAGGTGTTCTGCTCTTGGGATTTTAAAGTCATCAAGAAACGGTCTGTAAAGGTGCAGTCGGTGAACATCTGCATTCAGCTGAAGGAGATGCTGTCTGAGCTCAGCTGCAAAAAAACGAAGAAGAACTTGTGTTTAACTTCTCACTGGTTGGGTGTGCACTTTTTGGTATGGCTCATTTGCCTCCTCTGCATAGGAGCAAGCATTCCGGCCGTTTACTTCTTACACCCTTACATTGACCTGGGCAGTTTCGAGGGGAGCTCTTTTCAGAGCACCGTTGATTTGCTGAAGCTGCCTTTTGTGGTGTCTTGCGTCAGTCATCTGCTGCCTGTTTTCTTCAACGTGATATCCAGGGCAGAGCAATACAACTCTCCGAACACTCAGATTTATGTGTCCATTTTAAGGAACCTGTTGTTGAAGGGCTGCATTTTTAGTGTATTGTGTTACTACTGGCTCAAGAAAGTTTCTGAAAAGAAGAATCGAGAAAATAAATGGCAGTGCTGGGAGACGTTGGTTGGTCAAGAGCTTTACCGTTTGGTTTTAATGGATCTGTTCATTTTCGTGACGTACATCGTCTTCGCAGAGTTTCTGTGGGGGCTGTGTGTTAGAAACGTCACATTGAGAAGAAGAAAACTCAAATTTGACATTGCACGAGATGTTCTGGAGCTCATCTACGGTCAAACGCTTGTGTGGTTTGGTGTGCTGTTTTCACCTGTGTTGCCTGCGGTTCAAATCGTGAAACTGATTCTACTGTTCTACTTTAAAAAGACGAGTTTCATGATAAACTTTCAACCTCCCAAGAAACACTGGAGGGCCactcagatgaacacagtcttCATCTCGCTTCTGTTTTTCCCCTTCTTCACTGGGGCCCTTGCATGTGTCATTTATGCAATGTGGAGGGTCAAGCCCTCATCAGATTGCGGGCCCTTCGTTAACGTCCAGAACATGCTTCTATTAGGCAAGAAGTGGATCTCGAGCCTGGGTGAATCaaaccaaaatatgttttggcTCAGCTGGGCTTATAATAACCTGGTGGATAACCCTTTGTTCCTCTTCATCACGGCAATCCTGTTGCTagccattatatacacacacatgcaagttttgGATGGCCAAAAGATGATAATTGCTAAGTTAGAAGAGCAAATAGACAATGAGGGTGAAGATAAGAAGTTCCTTATAACTAAACTGCAGGAACTCAATGAGGCGAGTGCTCAGCAGTAAGGCTCTGTTTCCTTGATTTCGTCACCCGCTGAATACTTGTTTGATCTAGGAAGGCTGAATTCTACAGAAATTAACTCAACCTGAGAAACCAGTGGTGCGTCTTATTTAAAGCTGCATATTGCTCTGTCATTTAGtcatata

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36260 lncRNA upstream 11318 29195090 ~ 29203809 (+) True G24317
TU36257 lncRNA upstream 12266 29195090 ~ 29202861 (+) False G24317
TU36258 lncRNA upstream 12266 29195090 ~ 29202861 (+) False G24317
TU36259 lncRNA upstream 12266 29195090 ~ 29202861 (+) False G24317
TU36214 lncRNA upstream 73550 29131163 ~ 29141577 (+) True G24286
TU36327 lncRNA downstream 46953 29272032 ~ 29272318 (+) True G24359
TU36347 lncRNA downstream 73731 29298810 ~ 29299048 (+) False LOC122335232
TU36353 lncRNA downstream 80583 29305662 ~ 29305948 (+) False LOC122335232
TU36355 lncRNA downstream 87650 29312729 ~ 29318597 (+) True G24386
TU36376 lncRNA downstream 122656 29347735 ~ 29348652 (+) True G24398
XM_043233246.1 mRNA upstream 141381 29060775 ~ 29073746 (+) True LOC122335397
XM_043234732.1 mRNA upstream 160713 29048278 ~ 29054414 (+) True LOC122341401
XM_043232808.1 mRNA upstream 252585 28957657 ~ 28962542 (+) True fscn2a
XM_043232517.1 mRNA upstream 282043 28869766 ~ 28933084 (+) True LOC122334478
XM_043233420.1 mRNA downstream 3637 29228716 ~ 29230231 (+) True cenpx
XM_043232807.1 mRNA downstream 49574 29274653 ~ 29283738 (+) True notum1a
XM_043233117.1 mRNA downstream 59613 29284692 ~ 29287182 (+) True LOC122335289
XM_043233102.1 mRNA downstream 63059 29288138 ~ 29291444 (+) True pycr1a
XM_043233049.1 mRNA downstream 73629 29298708 ~ 29306240 (+) True LOC122335232
TU36055 other upstream 368835 28843841 ~ 28846292 (+) False LOC122335482
TU36019 other upstream 506528 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 568035 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 654803 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1932721 27281849 ~ 27282406 (+) False LOC122335546
TU36269 other downstream 3674 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 166839 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 214870 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 274444 29499523 ~ 29500119 (+) True G24436

Expression Profile