RNA id: XM_043232788.1


Basic Information

Item Value
RNA id XM_043232788.1
length 2803
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC122334878
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28592804 ~ 28650650 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCTGTTTTGTGGTCCACAAAAGGTGCCATGAGTTCGTTTCCTTCTCCTGTCCAGGGGCCGACAAGGGGCCTGACACAGATGATCCCAGGAGCAAGCACAAGTTTAAGATCCACAGCTACGGCAGTCCCACCTTCTGCGACCACTGTGGATCACTGCTGTACGGCCTCATCCACCAGGGGATGAAATGTGACACCTGCGACATGAACGTTCATAAGCAGTGCGTGATGAACGTGCCAAGTCTGTGCGGCACCGACCACACTGAGCGCAGAGGAAGACTCTTTCTCAAGATCGAGGTCAGCGGAGACAGACTTCACGTCACAGTGGGCGAGGCCCGAAACCTGATTCCCATGGACCCCAATGGCCTGTCAGACCCGTATGTGAAGCTCAAACTCATCCCGGACCCCAAGAACGAGACCAAACAGAAGACCCGCACTATCCGCTCCTCGCTCAACCCCACCTGGAACGAGTCCTTCATCTTcaAGTTAAAGCCTTCGGATAAGGAGCGTCGCCTGTCTGTGGAGGTGTGGGATTGGGACAGAACCACCCGTAATGACTTCATGGGCTCTATGTCCTTTGGTGTGTCGGAGCTGATCAAAGCTCCTATAAGTGGCTGGTATAAGATGTTAAACCAGGAGGAGGGTGAGTACTACAATGTGCCCATCCCAGAGGAGAACGACATCAACCTGGAGCTGAGGCAGAAGTTCGAGAAAGCCAAGCTCGGCCCTGGAAAGAAAGTCATCACTCCCACTGATCACCGACGCTTCAGTTTACCATCCGGGAACATGAACAGAGTTCAACTCAATGACTTCCATTTTCTGGCTCTTCTGGGCAAAGGCAGTTTTGGGAAGGTCAGTCACTGTCGGGCCTCAAACAAATGCTTGGTAATGTTGGCAGAGATGAAGTCCACTGAGGAGCTGTATGCCataaaaatcctgaaaaaggACGTGGTGATCCAGGACGATGATGTGGAGTGCACAATGGTGGAGAAGAGAGTACTGGCCCAGAGAGATAAGCCACCTTTCCTTACCCAGCTGCACTCCTGCTTCCAGACTGTGCAATCATATATGACGATGGACCACAAAACCGATCGTCTGTACTTTGTAATGGAGTACATTAACGGCGGAGACCTGATGTATCACATCCAGCAAGTGGGCAAGTTTAAGGAGCCACAAGCCGTATTCTATGCCGCAGAGATTGCTGTCGGACTCTTCTTTCTTCACAGGAAGGGAATTATTTACAGAGATCTGAAGCTGGATAACGTGATGTTGGACTCCGAGGGCCACATCAAGATTGCAGACTTCGGCATGTGTAAGGAACACATGTATGAGGGCATGACGACGCGCACCTTCTGCGGAACACCGGATTACATCGCCCCGGAGATAATCGCCTATCAGCCGTACGGGAAATCTGTGGACTGGTGGGCGTACGGTGTGCTGCTCTACGAGATGCTGGCTGGGCAGCCTCCATTTGATGGCGAGGACGAGGATGAGCTGTTTCAGTCCATAATGGAGCACAATGTTTCCTACCCCAAATCCCTGTCTAAAGAGGCAGTGTCCATCTGTAAAGGGCTGATGACGAAGCATCCATCCAAGCGTCTAGGTTGCGGTCCAGAGGGTGAGAGAGATATAAAGGAGCAAGCTTTCTTCCGCAGAATCGACTGGGAACGGTTGGCCAACAGAGAGATCCAGCCACCTTTCAAACCCAAAGTGTGCGGCAAAGCGGCAGAGAACTTTGACAAATTCTTCACCCGCACGCAGCCCATGCTGACTCCTCCAGACCAACTGGTCATCGCCAACATCGACCAGAGCGAGTTCGCTGGATTCTCTTACATAAACCCAGAGTTCATCCACCCATCGTCGCTTCACAGTGTTGTATGAGACGGCCCTGACGAAGACGAGGACCACCCGTCCCGCGCAAACTAACAACCGTATCCATGTTATTTATGAACGCACCAAATCTTTGTAGACAGTTGAATACCCTTTATCTGAACATATCTGAACCGAGGAGGGCTGGAGAAGGGGGTTTGATGGCTGGAGGGAAATTTTAAGGCTCGTTCCTGacaaattattcttttatgAGAACCCATCTCGGTTAGGACGCTGCTTGGGTAGGCAGCAGACAGAAAGCCCTGTCAGAAAGATGTCCTCGCAGTGAGTGAGTCGCATGCAGATAGATGTTACGTGCAGGGCCAgtatattttccaaaaacagatattttttgaAGGCGAAGATACTAAACGATCCCTTTTTTCCAGTCCTCAGATTCTTCGTGTGTGTGAAGCATGCCGACATGAAACAGGTTTTTGTGTCCTATTCCTTGTATCCTCTACTGCCATTTCTAATGTTCcttgaattatatatttgtaaatctaaaaaaaaaaaaatatcttgttaTAGGAGTGCCAAAATATAACTGCATCAAAAGGTTTTTTATATCCAGCTCTATATATGCATATTGATTTCCTACTAGATCTCTTGGTGGTGTCCCTTATCTTGGGCCGAAACTTGAACCCTTATCGCTCCCCGAGTTTTAGCATGACAACTTCCAATCCCGTCACTGCCTGCTCGCCCCGGTTCCTATACATAATCAACATATACACgactctttctctccctctaaATGTATGGATTGTGATTCCTCGTTGGTAAAGCGCGGGCCTACGCACTCCCCGCAGGATCCTGCAGATTTCCGCAGAATTCTACCACCCGTCCTACCCATCCATCTGCacgtttgtttttatgaaatacttCAGATGATGCTCTTTTATTTAACGTATTTTACCCATCCCGTAGATTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248991.1 lncRNA upstream 198271 28393741 ~ 28394538 (+) True LOC122335662
TU35756 lncRNA upstream 263398 28328465 ~ 28329411 (+) True G23964
XR_006248988.1 lncRNA upstream 272653 28319710 ~ 28320156 (+) True LOC122335640
TU35738 lncRNA upstream 357273 28227075 ~ 28235536 (+) True G23953
XR_006248990.1 lncRNA upstream 556651 28034400 ~ 28036158 (+) True LOC122335654
TU36004 lncRNA downstream 53380 28704030 ~ 28705144 (+) True G24132
TU36022 lncRNA downstream 58130 28708780 ~ 28715865 (+) True G24138
TU36023 lncRNA downstream 59256 28709906 ~ 28716193 (+) True G24139
XR_006248999.1 lncRNA downstream 67382 28718032 ~ 28719109 (+) True LOC122335688
TU36034 lncRNA downstream 107045 28757695 ~ 28831744 (+) True G24146
XM_043234723.1 mRNA upstream 273100 28316600 ~ 28319709 (+) True LOC122341391
XM_043232688.1 mRNA upstream 524710 28036420 ~ 28068099 (+) True LOC122334736
XM_043233349.1 mRNA upstream 640352 27951751 ~ 27952457 (+) True LOC122335462
XM_043233192.1 mRNA upstream 862917 27728324 ~ 27729892 (+) False LOC122335347
XM_043233130.1 mRNA downstream 2443 28653093 ~ 28658489 (+) False cacng5b
XM_043233148.1 mRNA downstream 2445 28653095 ~ 28658489 (+) False cacng5b
XM_043233138.1 mRNA downstream 3435 28654085 ~ 28658489 (+) True cacng5b
XM_043234727.1 mRNA downstream 56381 28707031 ~ 28708608 (+) True LOC122341395
XM_043234728.1 mRNA downstream 61053 28711703 ~ 28714513 (+) True LOC122341396
TU35969 other upstream 32485 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1310403 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1745452 26846723 ~ 26847357 (+) True G23695
TU35300 other upstream 1791414 26798811 ~ 26801395 (+) False srsf2b
TU36019 other downstream 56663 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 193191 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 578103 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 741268 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 789299 29439949 ~ 29442655 (+) False LOC122335508

Expression Profile