RNA id: XM_043232809.1


Basic Information

Item Value
RNA id XM_043232809.1
length 2532
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC122335014
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28793052 ~ 28797759 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCACGGACAATTATATAGCCCTTAAAAATGGTGAAATGCCAAGTCAGCAGTAGTCACTGCGATCGATGAGGTTTGGAGTTGGCGAAATGTTCTAGGAAAAGAAATATGACCGCAATATCACACACGGCACACGGTATATAATGATTATGTCAGGCtggtataaaaaaagaaaatacaatagaaGAGCCTTGCTCTTTAGGGCTATGTAAAGTAAGGACGTCCCTTAATTAAAGTGTTGTAGTCTCTCTATACGCCGTCAAACATAATTAAAACCCTGGAAGAGTTTGCCGATGTGCAGTGATTGTTTTCGTGTATGGCCTTCTGGGCTTTTGTGAAGCACAGAATGGCCTCCTGTTTGACTGTCCCGGCGAGTAATTAGCTCTCCGTTGTGACGTTCAACAATCAGCTGAATGCGGGGATCTCTCAACATCTCATCTGTAGCCTCAGCAACAGGCAGGCTCACACAAAACGCGGGATCAAATTCAATAGACATCGTATTTTTTTGGGTtgtattttgtttgtctttcaCGACAGCGGTTTTCAAAGAGCCGCGACTCTTTAAAAGAGCCGAATCGTCCTGGTTTTTCCCTCCAAAAACTGTAAACGGTCAGCTGGAGTTCCTCTTAGCTGGGAGTTTGCTAGCGAAGGTCAACCCTTTGTCGGATTTTGCTTCTTAAAAAAGGTATAAGCATGcgatttatttactcatttttttcGTTTGCAGGAACTGACATGGTTCTTCCGCGCAGGATTTCGTTGCTGCTCCTCTTCTGTTCGCCTCCACTAGTGTTTGCCGCTGATAACTCCACCGAAACCCCCTGCGATCGTCGCTGTTTGGCGAATGCTCGGGTTGAGAAAGAACTAGTCAGCGCGCCACAGAATGATAACTGCACCATGACAGTGAAAATCACATCGATGCAGTATGAGATGCTGTCTTTCGATACAAAGGTCATGCAAATGAACAGCCGTATCAAGGTAAACATGGAATGGAAGGATCCTGATCTCGGATGGATGCAAGAGAGATCTAGAATCCCAACGATCGTTTTGCCCATTGATAAAATCTGGATTCCACGGATAGTTTTGGACAACGCGTGCGTCTCCAGACCGATGCTGAGCCAACggcatatatacattttttattcttggCGTTGTTCGGGTAATTCCCCTCTGTTTGCGCGCAGGATAGAAACGACCATGGAGCCGTACACTAATGACGTTCAGGTGAGGCGGGATGGGACCGTGAGTCATGCGGTCGTTTTGTTCACGACGGTGAGCTGTCAGATCAACCTCTTCAACTACCCCTTTGTGGAGGGGTCGTGCCCTGTGGCCATCAATGGATGGTGCCAGAAAACTTGCTCGCTCGCGCTCCAGATCGCTGATAACGTGACGCTGGTCGGCGGCAGTCGAGGAGAGTGGCAGACTACTAGAGTGGTCAAAACTGTGGATGCATCAAAGCGTGTTTATCTCCAAGTCGCTCTGACGATTAACCCCTTCACTGCTTTCGTGACCCTGATCCTGCCCAGCGGGCTGATACTTCTGGCTGACCTGGTGAGCTTTGCTCTTCCTTTCGAAGGAGGAGAGCGCAACTCTTTCAAAGTCACTTTGGTCCTGAGCTTCACCATgttcctcctcatcctcagcGACCACCTGCCCAACGGCGGCCACTGTAACCCCCTCCTCTACTACCACTTCAGCTTCTGTCTGGTGTGTTTGGTCATGAGCATGCTGGTCTCCATAGTGCTAACACGACTGGCCGCAGACGACAGCTTCTTGGTTTGCAGAGGCTCCGCCAAAGTTCATCCGTCAGACGGCGGCAAAGCAAATGACAGCCTTGATCGAGAGAAAGATACAAGTGCGATCACAACAAAGTCTGGCCACCCGGCTTCAGAGACGACTACACTCCAGAAAATAGCCAACCTTTTGGAGACCATGGATGCAAGAGAAAAGAAGATTGAGAGCAAAGTGGCATTCGCTTACCTCCTAGACAAATTCTGCTTCGGCTTTTTCATAATCATCTACGTGCTTTATGCCATAATTCTAATTGCTATCACCAGAACGGACATTTGTAAGGTTAATAATCTAGACTTCTGGGATGAATCTCACCGAGAAGATGAGAACTTTGACTACTCGTACTCAAACTAAAAGGCACCGTAACTTCTCAGATCTAAAGTGATGGCTGAATAATGGACATCAAATAGtgatttattgacatttataagGATATCAACTGAATCTTGGGAATCAATGCAAGGCAAAATACAAAATTGCTTATCTTGTAATTCTCACTGTCTAATTGAATGTGCATTGCATGCTTTTAAGATTGAAAACaaatttattagtattataccGCTATATTCTCGAAGACATTCTTATAGCATTCATtataacaacaaatacaaagcctattttaatcacaattgaacatttttaacgTTCTTAAAGTATGTTATGTCATCAGCAGTGGTCGAATTGTGTCAAACCAGACCACCACGTCcccttcaaaaaataaataaaaccttgtattggcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248999.1 lncRNA upstream 74722 28718032 ~ 28719109 (+) True LOC122335688
TU36023 lncRNA upstream 77638 28709906 ~ 28716193 (+) True G24139
TU36022 lncRNA upstream 77966 28708780 ~ 28715865 (+) True G24138
TU36004 lncRNA upstream 88687 28704030 ~ 28705144 (+) True G24132
XR_006248991.1 lncRNA upstream 399293 28393741 ~ 28394538 (+) True LOC122335662
TU36039 lncRNA downstream 4505 28802264 ~ 28802611 (+) False LOC122341400
TU36060 lncRNA downstream 57204 28854963 ~ 28855171 (+) True G24169
TU36061 lncRNA downstream 61126 28858885 ~ 28859136 (+) True G24170
TU36063 lncRNA downstream 64514 28862273 ~ 28862502 (+) True G24172
TU36065 lncRNA downstream 66885 28864644 ~ 28864859 (+) True G24174
XM_043233439.1 mRNA upstream 4764 28785532 ~ 28789067 (+) True LOC122335596
XM_043232830.1 mRNA upstream 56212 28735999 ~ 28737619 (+) True LOC122335069
XM_043234729.1 mRNA upstream 71887 28720547 ~ 28721944 (+) True LOC122341397
XM_043234728.1 mRNA upstream 79318 28711703 ~ 28714513 (+) True LOC122341396
XM_043234727.1 mRNA upstream 85223 28707031 ~ 28708608 (+) True LOC122341395
XM_043234730.1 mRNA downstream 555 28798314 ~ 28808828 (+) True LOC122341400
XM_043232840.1 mRNA downstream 18819 28816578 ~ 28818102 (+) True amn
XM_043232741.1 mRNA downstream 28854 28826613 ~ 28830736 (+) True otop2
XM_043233373.1 mRNA downstream 46055 28843814 ~ 28846375 (+) False LOC122335482
XM_043233380.1 mRNA downstream 46061 28843820 ~ 28846375 (+) False LOC122335482
TU36019 other upstream 85232 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 146739 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 233507 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1511425 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1946474 26846723 ~ 26847357 (+) True G23695
TU36055 other downstream 46082 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 430994 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 594159 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 642190 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 701764 29499523 ~ 29500119 (+) True G24436

Expression Profile