RNA id: XM_043233148.1


Basic Information

Item Value
RNA id XM_043233148.1
length 1789
RNA type mRNA
GC content 0.49
exon number 6
gene id cacng5b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28653093 ~ 28658489 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgcgcacacacacgcgcgcacacacacacacgcgcgcgcgctaGCTGGCTCGTGTTCGTTCTCGTGGTCAGACTGCGCTGCGAGGAGCTGCTTCACTCCACAGCTGGATTACGCTCAGATTCACTCTCATCAGCATCATTCTTCAGATTATCCGCGCGCGTGGTGAGCGCCCCCTGCCGGAGGCCGAGTGGCATGAGCGCGTGCGGGAGGAAGGCTCTGACCCTGCTCAGCAGCGTGTTCGCGGTGTGCAGCCTGGGGCTGCTGGGTATCGCCGTCAGCACCGACTACTGGCTCTACCTGGAGGAGGGCGTCATCCTGCCTCTCAACCAGAGCGCCGACATACGCGTGTCTATCCACTCCGGCCTCTGGAGAGTCTGTTTCCTGGCAGGTGAGGAGAGAGGCCGGTGTTTCACCATCGAGTACGTGATGCCCATGAGCGTTCAGCTGACCAGCGAGTCTACAGTCAGCGTCCTCAAGATGATTCGTTCGGCCACACCGTTTCCCCTGGTCAGTTTATTCTTTATGTTCATTGGTTTCGTGCTCAACAACATCGGACATATCCGGCCCCATCGCACCATACTGGCATTTGTCTCTGGGATCTTCTTCATCCTGTCAGGTCTGTCCCTGGTGGTTGGTTTGGTGCTGTACATCTCCAGCATAAACGACGAGATGTTCAACAGGACCAAGAGCAATGAAGCGTATTTCAGCTACAAGTACGGCTGGTCGTTCGCGTTCGCCGCCATTTCCTTTCTGCTCACTGAGAGCGCAGGCGTGATGTCCGTCTACCTGTTCATGAAGCGCTACACGGCGGAGGAAATCTACCAGCCTCACCCCAGCTTCTACCGCCCTCGCCTGAGCAACTGCTCCGATTACTCGGGTCAGTTCCTTCACCCCGACGCCTGGACGCGAGGACGCAGCCCGTCAGACATCTCCAGTGACGCCTCGCTTCAGATGAACGCCGGCTACCCTGCCCTGCTCAAGTGCCCCGACTACGACCAGGTGTCTTCCTCTCCCTGCTGAAGgtctcaaacacacacgcgcgcgtCTTCGCCTTATGTCCTGATAGAACGTACGACCGTCATGTTAGCGAGCCGAAGGCTTCGTTTCCAGCAGGAGGCAGTGTGGTATTCTCCTCTGGAGCGATTCACACGCGCGTAACCGTCGAAGTTTAGCGTAAAACCGGGTTTTGATCGATGTAAATATTTACGGTGCTCATACAAACATGAATTGTAGCCATTACGGAACAGTAGCCTTCAATCTTGCTTTCGAGAATAGCACATTTATGCGCGTTACACTATGTATTTATGCAATGTAAAATCTGTTCATACTTCAAATTGTATTCTTATAGAGGTtgttctgaaaaaaattaaatattagcaaataagtgcagatttttaaaaaggagaATATCTTGAAAAACTCATCAACATATACAAAGTatacaaataatcaaatgaacaaatatacAACGCATATCATGTATTAGTGCACATGTGAGATGAAACACATCAAAGTGGATATTATATTGTTGCTCCACAGCTTACTTATTTTCTGCTAGGAATATAAAACCTAACTCATAAAATAGCtctttgtaaacattttcacaTCCATGTTTGCATAACGAAgtattttgctttctttttgtaTCCGAAAATGTATCCGATGtgctgttttctgtctttttgtcaTAGCTAATGTATGATGACGCTTTctacattaatattttgtaagtgTGAGAAAGGTTGCATTTATGGATATAATCTAAAAATACTGCAAAGCTTTCCTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248991.1 lncRNA upstream 258557 28393741 ~ 28394538 (+) True LOC122335662
TU35756 lncRNA upstream 323684 28328465 ~ 28329411 (+) True G23964
XR_006248988.1 lncRNA upstream 332939 28319710 ~ 28320156 (+) True LOC122335640
TU35738 lncRNA upstream 417559 28227075 ~ 28235536 (+) True G23953
XR_006248990.1 lncRNA upstream 616937 28034400 ~ 28036158 (+) True LOC122335654
TU36004 lncRNA downstream 45541 28704030 ~ 28705144 (+) True G24132
TU36022 lncRNA downstream 50291 28708780 ~ 28715865 (+) True G24138
TU36023 lncRNA downstream 51417 28709906 ~ 28716193 (+) True G24139
XR_006248999.1 lncRNA downstream 59543 28718032 ~ 28719109 (+) True LOC122335688
TU36034 lncRNA downstream 99206 28757695 ~ 28831744 (+) True G24146
XM_043232794.1 mRNA upstream 2445 28592809 ~ 28650650 (+) False LOC122334878
XM_043234727.1 mRNA downstream 48542 28707031 ~ 28708608 (+) True LOC122341395
XM_043234728.1 mRNA downstream 53214 28711703 ~ 28714513 (+) True LOC122341396
XM_043234729.1 mRNA downstream 62058 28720547 ~ 28721944 (+) True LOC122341397
XM_043232830.1 mRNA downstream 77510 28735999 ~ 28737619 (+) True LOC122335069
XM_043233439.1 mRNA downstream 127043 28785532 ~ 28789067 (+) True LOC122335596
XR_006248835.1 other upstream 6003 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 92771 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1370689 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1805738 26846723 ~ 26847357 (+) True G23695
TU35301 other upstream 1851700 26798811 ~ 26801395 (+) False srsf2b
TU36019 other downstream 48824 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 185352 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 570264 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 733429 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 781460 29439949 ~ 29442655 (+) False LOC122335508

Expression Profile