RNA id: XM_043233192.1


Basic Information

Item Value
RNA id XM_043233192.1
length 901
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC122335347
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27728274 ~ 27729892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGTAACTCACTAAAGAGAAGAATCTACTCTTACTGCTGGATTCTGATCTGACGAGTCAAGCTGCCAGTTCTTCACAATCTGGCTTTAGACTGTACTGTGATGAGCAGTAACCTGAAGCAGATAGACACTGGGTTGGGTTCAGTGCTTGGCGTGAAAAATCAGAACGAAGTGTTTGTTCTGCTTGATAATGTCTTCACAAAGATCAGTGGGTCTTTAAAGCACTTCAGTGTCGGTCCTGCTGGTCAGTTGGGGGTGAATGTAGCAAACAACATCTTCAAGTATCAGAGCGGTTCCTTCGTTCAGTTTCCAGGGCTTCTTAAACAGGTGGATGCTGGAGGTGATCAGATCATTGCAGGTGTCAACATGAATGATGACATATTCTGTTTAAATATGGATGCTAACAACAAATGGCCATCCAGCAATACTCCTTGGTTTCAACTTAATGGAAAGCTGAAGTATTACAGCTGTGGGCCGTACAGCTGTTGGGGAGTGAATGGCAATGACCAAATCTACATCCTAAGGAATGTGTCTAATAATGTCTGTTCTGGGTCTGGAGAATTTATGAATATTCCTGGACTTCTCTCCATGGTCGAAGTAGCAACTGATGGCAGCGTCTTTGGTGTCAACTATCAAGGGAACTTGTATCAAAGAATTGGTGTCACTCGCTCCAACCCAGTTGGCACAGACTGGCAATCAATGGCTGTCTGTCCCAATGGCCACAAGCATGTGAGCTTTGACCTGGGAGTGCTGTGGGTCGATTGTGTTGATGGCTCCATTCGTAAATGCCCTTTATAATGTCACTGCCGAAACAGTAGCTCAGTCACTAAAATGAAACCTCAACGTGACTAGTCATTAACAGAAAAGCTTAATACTTGCTGTTGAACCAATAAAATCTTGA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35697 lncRNA upstream 8668 27719185 ~ 27719656 (+) True G23915
TU35695 lncRNA upstream 13433 27713538 ~ 27714891 (+) True G23914
TU35690 lncRNA upstream 38466 27686894 ~ 27689858 (+) True G23909
TU35653 lncRNA upstream 194501 27530689 ~ 27533823 (+) True G23886
TU35630 lncRNA upstream 253254 27472854 ~ 27475070 (+) True LOC122335648
TU35636 lncRNA downstream 4650 27734542 ~ 27800229 (+) False G23878
TU35637 lncRNA downstream 4650 27734542 ~ 27800229 (+) True G23878
TU35622 lncRNA downstream 23547 27753439 ~ 27816189 (+) True G23873
TU35641 lncRNA downstream 65950 27795842 ~ 27797060 (+) False G23878
TU35707 lncRNA downstream 74719 27804611 ~ 27806333 (+) True G23924
XM_043232585.1 mRNA upstream 119187 27574258 ~ 27609137 (+) False LOC122334574
XM_043232600.1 mRNA upstream 126098 27574258 ~ 27602226 (+) True LOC122334574
XM_043232595.1 mRNA upstream 127563 27574258 ~ 27600761 (+) False LOC122334574
XM_043232632.1 mRNA upstream 171794 27533844 ~ 27556530 (+) True LOC122334614
XM_043232694.1 mRNA upstream 239967 27475325 ~ 27488357 (+) True LOC122334777
XM_043233349.1 mRNA downstream 221859 27951751 ~ 27952457 (+) True LOC122335462
XM_043232688.1 mRNA downstream 306528 28036420 ~ 28068099 (+) True LOC122334736
XM_043234723.1 mRNA downstream 586708 28316600 ~ 28319709 (+) True LOC122341391
XM_043232766.1 mRNA downstream 862912 28592804 ~ 28650650 (+) False LOC122334878
XM_043232783.1 mRNA downstream 862917 28592809 ~ 28650650 (+) True LOC122334878
TU35581 other upstream 445918 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 880967 26846723 ~ 26847357 (+) True G23695
TU35299 other upstream 926929 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 785751 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 862923 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 977421 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1113949 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 1498861 29228753 ~ 29230230 (+) False cenpx

Expression Profile