RNA id: XM_043233600.1



Basic Information


Item Value
RNA id XM_043233600.1
length 1020
RNA type mRNA
GC content 0.47
exon number 8
gene id aspdh
representative False

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19917670 ~ 19921271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AACCTGCTCTATCCCACAGTTTCTCAAGTTCAAACAGcgaagtgagagagagagagatcgccGGACATCAAGAAGAAAGAGTGATAAATAGAGAAAAGATATGGCTGATAGAGGTTTAAAGGTTGGAATTGTGGGATATGGACATTTAGGCCAGTTTCTTGTTGAGAAGATCCAGAAGGAAGGGCCTGAGGCAGGGCTGCAGTTAGCCTTTGTCTGGAACCGAAATGCAGACAAACTTAGAGATTCACTGCCCAGAGAGCTGATTCTACATGACCTCTCAGATTTCACGCGcagAGACACCGATGTAATAGTGGAAGTGTGCCATCCAATGATAGTTAAAGAGTTCGGGGTCAGATTTCTGTCACATGCTCACTTCCTGGTGGGCAGCCCTTCTGCCCTCTCTGATCCCCAGCTCGAGCAAGATCTTCGCACGGCTGCAAAACAACATGGGAAAACACTTTATGTGCCCAGTGGTGCATTATGGGGGGGACAAGATATTCAAAAAATGAATGACAGTGGAACTTTACAGGCTCTCTCCATCCGAATGTCTAAACATCCTTCTTGCTTTCGGCTGACTGGTGGTCTGCTCTCTGATTGGACGGAGGGAGAGGGGAGGCGGGTCTTGTACCACGGCTCAGTGGCAGAGCTCTGCCCCATCGCCCCAAATAATGTGAACACTATGGCAGCAGCGGCCATAGCCGCATCAAAGCTGGGCTTCAATGGGGTTAGCGGAGAAATCGTCTCAGATACTGCATTATCAGACTACCATATTGTGGAGGTTGAGGTAACTGGTCCAGATGGGTTCACAGTGAAAACAGTGAGACAAAACCCAGCCAAACTAGGAGCTGTAACAGGAAATGCCACATACAATTCCTTCTGGAGCAGCTTACTGGTCTGCAAGGGTCACGGAGGAAGGGTATATCTGTGTTGATGACAATGGATTGCTGCACAAAGCGAACAGATTAAAGAAAAACGCATGATATAGCacatgatgaattaataaaacaagcGTCATGTTAA

Function


GO:

id name namespace
GO:0006742 NADP catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0033735 aspartate dehydrogenase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32016 lncRNA upstream 7523 19903586 ~ 19910683 (+) True G21554
TU32018 lncRNA upstream 12553 19881382 ~ 19905653 (+) False G21554
TU32021 lncRNA upstream 41885 19873439 ~ 19876321 (+) True G21555
TU32062 lncRNA downstream 7458 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA downstream 26810 19948081 ~ 19951634 (+) True G21586
TU32026 lncRNA downstream 32805 19954076 ~ 19970419 (+) True G21558
TU32079 lncRNA downstream 143689 20064960 ~ 20065876 (+) False LOC122341338
XR_006250469.1 lncRNA downstream 239165 20160436 ~ 20161211 (+) True LOC122341550
XM_043229689.1 mRNA upstream 406699 19509088 ~ 19511507 (+) True nkiras2
XM_043235343.1 mRNA upstream 463891 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 468544 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 472309 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 500315 19409591 ~ 19417891 (+) True rabep2
XM_043233554.1 mRNA downstream 9462 19930733 ~ 19941580 (+) True pold1
XM_043234687.1 mRNA downstream 66235 19987506 ~ 19998472 (+) True LOC122341334
XM_043234688.1 mRNA downstream 77222 19998493 ~ 19999588 (+) True LOC122341335
XM_043234998.1 mRNA downstream 88862 20010133 ~ 20021740 (+) True LOC122341548
XM_043234689.1 mRNA downstream 142999 20064270 ~ 20069253 (+) True LOC122341338
TU31603 other upstream 515030 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 515030 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 515030 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 625865 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 925009 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 143219 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 144859 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 185575 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 264296 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 266257 20187528 ~ 20188083 (+) False eftud2

Expression Profile