RNA id: XM_043233621.1


Basic Information

Item Value
RNA id XM_043233621.1
length 1645
RNA type mRNA
GC content 0.51
exon number 7
gene id aldoaa
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15280728 ~ 15285025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCACTTCGTCTGAATAAATACAGGTCATCTGGCACCATATGAGTGTCACAGACTATCCAGACCTCCTCTGCCTCCGTTTGGGGAGTATCTCTTGCTCACTTCATCCAAAAACCAGAGTCAAGATGCCTCACGCTTACCCATTCCTCACTCCAGAGcagaagaaggagctgagcgaTATTGCTCAGAGGATCGTTGCTCCTGGCAAAGGCATTCTTGCTGCGGATGAGTCTACAGGTAGCGTGGCTAAGCGATTCCAGAGCATCAATGCTGAGAACACGGAGGAGAACAGGAGACTGTATCGCCAGCTTCTGTTCACCGCAGACGACCGCGTCAAGCCCTGCATCGGCGGCGTCATCCTCTTCCACGAGACCCTCTACCAGAAGACCGATGATGGCAAGCTCTTCTCCCAGCTCCTTAAGGAGAGGGGCATGGTAGTTGGCATCAAGGTGGACAAGGGTGTGGTTCCCCTGGCTGGCACCAACGGAGAGACCACCACACAAGGTCTGGATGGGCTGTACGAGCGCTGCGCTCAGTACAAGAAAGACGGGGCAGACTTCGCTAAATGGAGGTGTGTGCTGAAGATCACCCCCACAACTCCCTCAAGACTGGCCATCATTGAGAACGCCAATGTGCTCGCCCGTTACGCTAGCATCTGCCAGATGCATGGCATTGTGCCCATTGTGGAGCCTGAGATTCTGCCTGATGGTGACCACGACCTGAAGAGGTGCCAGTATGTGACCGAGAAGGTTCTGGCTGCCGTGTACAAGGCCCTGTCGGACCACCACGTGTACTTGGAGGGCACTCTGCTCAAACCCAACATGGTGACCGCGGGGCATTCGTGTTCCCAGAAGAACACCCCTCAGGAGGTCGCCATGGCCACTGTCACAGCTCTTCGCCGCACCGTTCCTCCCGCCGTGCCTGGTATCACCTTCCTGTCTGGAGGCCAGAGTGAGGAAGAGGCCTCACTCAACCTGAATGCCATGAACCAGTGTCCCCTGCACAGGCCCTGGGCCCTGACCTTCTCCTACGGTCGTGCCCTGCAGGCCTCTGCCCTCAAAGCCTGGGGTGGCAAGAAGGAGAATGGCAAGGCCTGCCAGGAGGAGTTCATAAAGAGAGCTCTTAACAACAGCCAGGCCTGTGTTGGGAAGTATGTGTCTTCAGGAGATAAGGGTGCTGCTGCTGGAGACTCTCTCTTTGTGGCCAACCATGCCTACTAATCACCAGGAAGCCTTTTACATTTCAGTCCTCCTCGTGTCCCTAAAGAATCACTGAACCCGAACGCATCTATACTCTGAACTCATCATTTGACCCATTCCCATTTTCTGTCTAGTGTTTGTTTCTTCCATGTGTGAAAACTAAACTATGAAACTAAGAGATAATACTTAAGAGCAATGGCAATTTAATGATAACGTTTCTGCCCTAATAACCTCCCTCTTTCTTTTAATAGCACTCCAATGTATTGTAATGTTTAACTCTTTAGAGAAACGTTACTCTTGTACTTGTAGTACTTATAATAACTGTATTTGACTTGCACAAAGCACATATACCTTTCAGgggtatattattattattattgttgttgttgtttaatatgatgcgcactggaaaaaaaaccattaaagtATCTTTCACTGCTCACCTAA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0043473 pigmentation biological_process
GO:0007409 axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30245 lncRNA upstream 4036 15276294 ~ 15276692 (+) False zgc:165423
TU30185 lncRNA upstream 141828 15129681 ~ 15138900 (+) True G20269
TU30054 lncRNA upstream 287691 14990229 ~ 14993037 (+) True G20188
TU30039 lncRNA upstream 290736 14972299 ~ 14989992 (+) True G20179
TU30048 lncRNA upstream 309067 14971012 ~ 14971661 (+) True G20183
TU30422 lncRNA downstream 302187 15587212 ~ 15588809 (+) True G20415
TU30435 lncRNA downstream 421911 15706936 ~ 15744171 (+) False fscn1a
XR_006248753.1 lncRNA downstream 429707 15714732 ~ 15725356 (+) True LOC122334397
TU30436 lncRNA downstream 431172 15716197 ~ 15727870 (+) False LOC122334397
XR_006248755.1 lncRNA downstream 435222 15720247 ~ 15721303 (+) True LOC122334400
XM_043233604.1 mRNA upstream 615 15269800 ~ 15280113 (+) True zgc:165423
XM_043233610.1 mRNA upstream 615 15269800 ~ 15280113 (+) False zgc:165423
XM_043233603.1 mRNA upstream 23693 15250534 ~ 15257035 (+) True zgc:100868
XM_043235668.1 mRNA upstream 181631 15092956 ~ 15099097 (+) True tmem98
XM_043235009.1 mRNA upstream 230291 15029823 ~ 15050437 (+) True kcnj19a
XM_043225448.1 mRNA downstream 2583 15287608 ~ 15292909 (+) True cln3
XM_043235768.1 mRNA downstream 8353 15293378 ~ 15300967 (+) False prpsap2
XM_043235767.1 mRNA downstream 8361 15293386 ~ 15300967 (+) True prpsap2
XM_043233739.1 mRNA downstream 34857 15319882 ~ 15338761 (+) True epn2
XM_043233740.1 mRNA downstream 34857 15319882 ~ 15338761 (+) False epn2
TU30209 other upstream 95855 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 111470 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 610048 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 614199 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 614806 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 894885 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 1405678 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 1405678 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 1412974 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1720889 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile