RNA id: XM_043233639.1


Basic Information

Item Value
RNA id XM_043233639.1
length 3101
RNA type mRNA
GC content 0.42
exon number 6
gene id trim35-12
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6679181 ~ 6684198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTGAGAATTTAGTGATGATATTTCAAGTTAAGGATAGCCACGGCTctataaaaggtcatttttggTAAAGGACGTGAGGGCGCTTGTGGAAGGCACTGCAGGCGCAGCTTGGGCTCATAGCGTTTTTTGGGTTCAAAAGCGAGTGGACTTCACTTCATCAACGCCACACAGCCATGCCCTTGCGACCGAGGGCTTCCTCTCAACCTGGAAGAGCGAACACCCTTCCGAGCCTCAAAAACATCCCGGGTCTGCGTCCGAGAGCTTTGTCGTCCCGTACGCAGTCGCCCTTAGAAGATGAGCTCTCTTGTCCGGTCTGCTGCGAGATCTTCACCGATCCCGTGGTGTTGAAGTGCAGCCACAGTTTCTGCCGCCTCTGCCTTCAGGGCTTCTGGAACAAGAAGGCGGCCAAGAGGGAATGTCCCGTGTGCAGGAGGAAGTGTTCTCTGACGGAGCCCACCGTGAGTCTGGCTCTGAAGAACGTGTGTGACGCCATCGCAAAGGAGCAGAAAGGACAAGATTCTGCGAGGTACTCGGCCAACGGGACGTCCAAACCGGAGACTCTCTGTGCCACGCATGGAGAAGGACTCAAATTGTTCTGCCAGTATGATGAAGAGGTTCTCTGTTGTGTTTGTCAGACGTCCAAGAAACATCAAGGCCATAGCGTGTGTCCTTTGGAAGAGGCAGCGAACGACCTCAAGGAGGAACTGCGGCAGATAGTCGTCCCACTTAAGAAAAGTCTTCGACGCCTCTATGAGGCCAAACAGGAATGTGATGACATAACTGTCCACATCAAGAACCAAAGACAtcagacagagaaacagattCACGAGGAGTTCGAAGAGCTTAGGCAATTTCTTCTGAAGGAGGAAGCTGCAAGGATTGCTGCGCTGGCAGAAGAAGAGGAGACCAAGAAACAGACGATGAAGAAGAAAACGGACATAATCGCTCGTGATATACTCACCTTTTCTCAGGCTGTTATGGCTATTGAAAACGAGATTGCTAATGCTGACAGCCTCTTTTTACAGAACTACAAGAATGTCAAAAAGAGAGCTCAGATAACGTTTAGCGAACCGGAAAACATCCCCGATTCTCTAATAGACGTTGCAGAGCACATGACCTCGCTGAAGTTCAGAGTGTGGGAAAAAATGCAGAGCCTCGTGGAATACACTCCAGTGTCGTTGGACCCCAACACAGCGTACCCCTGTTTGTCTCTCAGCAAGAACCTGACGAGTGTGTCCAACACGGGGTCGATGAAAGAGCTGCCTGACAACCCGGAGCGCTTTGACCACTTTGTTTTCGTACTGGGCTCCAAGGGTTTCACTTCAGGATGTCACTCCTGGGAGGTGGACGTGGGCCGAAATAACGACTGGGTAATCGGTGTGGTTAAAGAATCAGTAGCCAGGAAAGGCAAAATCTCAGGCTGTCCCGAAGGAGGATTCTGGACCATCGCTCTCTCTGATGGGAAGTACACTGCCATGACCACCCCACATACACCGCTCAGCCTGAAGGGCCACCTGGAAAGGGTCCGGGTGAAGATCGACTATAACAACGGAGAGGTCAGCTTCTTTGATTCAGTGGGTGTCACGCCTATCTACACATTCAGTGACCACTTTACTGAGACGATGTTCCCTTTTTTCTGTCCGGGGGCCAATATAAATGGGAACAATCCAGGGCCGTTGAAGATCTGCCCTGTGAGAGTGGCAGTATGGAACAGCGCCTCCTGGTGATGCCAGGATAATTATGTACTTCTGCTCCAGTTATACAGTACCAGTCAAAGATTTGGAAAGGTTTACCTTGTAATCATAATAcgattttttaatcaaatcattaaataaGTCAAGTTGAGGTACGACCAGGTGTGACCAATATTTGATCTTCATCACACTCTGGGCGTTCTCACTTGTGAGGTGCATTCTGGGATGCATGTTCACAAGTATGCTGGAAatttttaactgatttaaaaaaaaaaaatagaaccaTATAAAGGCAAGCTGTCATGGAATTTGGGAATTGCATGGAATTGCATCTGGGCTTCCATGAAAATCTTTATATTCCACAAAACGTTCTTTATAGAAGATTccttagatttttttcttgactATGAAGTCTTGTGTTACCTGTAAAATCTAAGTAAGGACACAACTCCTTTAAGAGTAGTTATCAGCCCATGTTGTTTATTGTTAACTTGAACTGGCcgtaattaatatttcaattatttctcAAATCTGAAGTTCTCAATATCAAACTATATACCCAATAACTGCTTAGTCTTCTTTTCCCCACCAGTAGTTACTTATCTTTTAATGCCATGAAGGTTTCTTAGCGATACGACTtgacttttaaatttaaagcacAGAAGACTGTCAcgcatgtaaaaataattttacataggCATTTGCTGAACAGATTTTACAGCTCACAAGAAGCTAGGTCAAGTATGTCCAGACCTTTGATTGGTAGTACATGATGTTATGTTTTATGGCCAGTTTGTTGACTATGAAAGTAAATGTTTGGATAGTTCaactaatatttacatttaccttattaaaaaaaatgtcactgatATGTCATTTCAACTGATGAGAAAAGCTAGTTGTATAAATTTTCACGACGGTAGGTTTAGTAGAAGTTTAATAATCTCAGTAGATCAGTGtaatatagtttataaaatgtaaagatacttgtcaaaatataaaaagtctaTTTTAAGACAGTATTGCTTGCCGAGGCGCATGTAGTGCAGTAATGCTGTCAGAAAActctaaatacaaaatatgttttgtgatggttttttaaatcatgaatgGAAAATGCTGACACAATATTGaagtattgtttgttttatttatagaacATGCAGTAAATGAAGTTAATCATTAATGACTTGTaactttaattatgaaaatctgtaaaatagATGATCTGGATCAACCCTTATACTTTTTCTGGTTTACAAGGGCATTGTTTTTCCAGTGTAGACATAAAATTGtggtattgtttgttttattgtattaaatacacAGAGAATGAAGTCTTAAACATGTCAGCCATTAATGACTATGCTTATTcatattgattaaaataagtCATCTGGATCA

Function

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26329 lncRNA upstream 53885 6623688 ~ 6625296 (+) True G17630
TU26258 lncRNA upstream 203562 6475099 ~ 6475619 (+) True G17584
TU26226 lncRNA upstream 242213 6436732 ~ 6436968 (+) True G17560
TU26186 lncRNA upstream 260818 6417662 ~ 6418363 (+) True G17524
TU26190 lncRNA upstream 325356 6346536 ~ 6353825 (+) True G17528
TU26379 lncRNA downstream 20216 6704414 ~ 6704702 (+) True G17662
TU26380 lncRNA downstream 20997 6705195 ~ 6705405 (+) True G17663
TU26412 lncRNA downstream 162740 6846938 ~ 6847606 (+) True G17683
TU26442 lncRNA downstream 218548 6902746 ~ 6903161 (+) True G17699
TU26448 lncRNA downstream 237998 6922196 ~ 6976265 (+) True G17704
XM_043233643.1 mRNA upstream 464 6670199 ~ 6678717 (+) True gipc1
XM_043233644.1 mRNA upstream 464 6670199 ~ 6678717 (+) False gipc1
XM_043235363.1 mRNA upstream 9172 6665977 ~ 6670009 (+) True dnajb1a
XM_043235360.1 mRNA upstream 22565 6649673 ~ 6656616 (+) True samd1a
XM_043235358.1 mRNA upstream 32280 6630997 ~ 6646901 (+) True prkacaa
XM_043234964.1 mRNA downstream 112588 6796786 ~ 6833224 (+) True dnm2a
XM_043234966.1 mRNA downstream 156821 6841019 ~ 6846641 (+) True tnfsf14
XM_043233908.1 mRNA downstream 178211 6862409 ~ 6888805 (+) True ppap2d
XM_043235962.1 mRNA downstream 464724 7148922 ~ 7157297 (+) True si:ch211-207b24.4
XM_043225616.1 mRNA downstream 476556 7160754 ~ 7164555 (+) False LOC122329403
TU26266 other upstream 122431 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 122431 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 484159 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 971834 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1265563 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1265606 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 1266656 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 1275873 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile