RNA id: XM_043233684.1


Basic Information

Item Value
RNA id XM_043233684.1
length 798
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122336110
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11878905 ~ 11884999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATCCACAACTTCAGGAAGATCTGAAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTAGTCgaaatttcatattttctacGTTTTTGATAATAAAACGATAAAAACCCGCCGAAATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAACTTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTTTCTACTTCAAACGGGACGATGTCGCTCTTGCTGGTTTTGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGTGAGCATGCTGAGAAGTTCATGGAGCTCCAGAACAAGAGGGGAGGACGCATTGTGCTTCAGGACGTAAAGAAACCTGAGCGTGATGTTTGGGGCAATGGACTGATTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGATCTGCACAAGGTCGCCTCTGAGAGGGGAGACCCTCATCTGTGTGACTTCCTGGAGACTCACTACCTGAATGAGCAGGTTGAGGCCATCAAGAAACTTGGAGACCACATCACCAACCTTTCCAAGATGGATGCTGGAAACAACAGGATGGCCGAGTACCTGTTTGACAAGCACACCCTGGATGGAGACAGCAGCTAAATGCAGCTCAAAGATCCTACCAAtacaaaatgaatagaaatactattctcttaaatatattctCATCAAACAGCTCCTGTGCAAATTATCTTAAGCCTGAGAGGTTTAAAGGTTAACATCAAACAAAATATCCtg

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K00522 FTH1; ferritin heavy chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249757.1 lncRNA upstream 48356 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 164030 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 164837 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 442271 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 446412 11436944 ~ 11437197 (+) True G19123
TU28625 lncRNA downstream 6904 11891903 ~ 11893656 (+) False syt5a
TU28622 lncRNA downstream 82649 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 157885 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 187720 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 189232 12074231 ~ 12074503 (+) True G19257
XM_043233689.1 mRNA upstream 2722 11857788 ~ 11880887 (+) True LOC122336152
XM_043233688.1 mRNA upstream 2722 11878982 ~ 11880887 (+) False LOC122336152
XM_043233690.1 mRNA upstream 7051 11857771 ~ 11876558 (+) True LOC122336178
XM_043233691.1 mRNA upstream 7051 11861707 ~ 11876558 (+) False LOC122336178
XM_043233687.1 mRNA upstream 16131 11866054 ~ 11867478 (+) True LOC122336136
XM_043235435.1 mRNA downstream 656 11885655 ~ 11893242 (+) True syt5a
XM_043235436.1 mRNA downstream 656 11885655 ~ 11893242 (+) False syt5a
XM_043228260.1 mRNA downstream 91889 11976888 ~ 11979058 (+) True prl
XM_043225818.1 mRNA downstream 94764 11979763 ~ 11982000 (+) True LOC122329533
XM_043225827.1 mRNA downstream 94804 11979803 ~ 11982000 (+) False LOC122329533
XR_006249731.1 other upstream 49685 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 49685 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 49685 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 513857 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 547784 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 207604 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 418365 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 626927 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 626927 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 634838 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile