RNA id: XM_043233690.1



Basic Information


Item Value
RNA id XM_043233690.1
length 641
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC122336178
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11857771 ~ 11876558 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTCAACAGTGATTGAACGGAACTTCGATCTCGTcgaaatttaatattttctacgtttttgataataaaacgataaaaaaaaccccGCCGAAATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAACTTGGAGCTTTACGCTGAATACACCTACACCTCtatgGCTCACTACTTCAAACGGGATGATGTCGCTCTGGCTGGTTTTGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGTGAGCATGCTGAGAAGTTCATGGAGCTCCAGAACAAGAGGGGAGGACGCATTATGCTTCAGGACATCAAgAAACCTGAGCGTGATGTTTGGGGCAATGGACTGATTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGATCTGCACAAGGTCGCCTCTGAGAGGGGAGACCCTCATctgTGTGACCTCCTGGAGACTCACTACCTGAATGAGCAGGTTGAGGCCATCAAGAAACTTGGAGACCACATCACCAACCTTTCCAAGATGGATGCTGGAAACAACAGGATGGCCGAGTACCTGTTTGACAAGCACACCCTGGACAGCTAAATCCACCCCTGagatgaaaca

Function


GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K00522 FTH1; ferritin heavy chain

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006249757.1 lncRNA upstream 22518 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 138192 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 138999 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 416433 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 420574 11436944 ~ 11437197 (+) True G19123
TU28625 lncRNA downstream 15345 11891903 ~ 11893656 (+) False syt5a
TU28622 lncRNA downstream 91090 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 166326 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 196161 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 197673 12074231 ~ 12074503 (+) True G19257
XM_043231814.1 mRNA upstream 2710 11853762 ~ 11855061 (+) True LOC122333949
XM_043231809.1 mRNA upstream 5592 11844166 ~ 11852179 (+) True aldh16a1
XM_043233833.1 mRNA upstream 23847 11773202 ~ 11833924 (+) False kcnc3a
XM_043233830.1 mRNA upstream 32337 11773200 ~ 11825434 (+) False kcnc3a
XM_043233685.1 mRNA downstream 2347 11878905 ~ 11884999 (+) False LOC122336110
XM_043233688.1 mRNA downstream 2424 11878982 ~ 11880887 (+) False LOC122336152
XM_043233684.1 mRNA downstream 7051 11883609 ~ 11884999 (+) True LOC122336110
XM_043235435.1 mRNA downstream 9097 11885655 ~ 11893242 (+) True syt5a
XM_043235436.1 mRNA downstream 9097 11885655 ~ 11893242 (+) False syt5a
XR_006249731.1 other upstream 23847 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 23847 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 23847 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 488019 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 521946 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 216045 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 426806 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 635368 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 635368 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 643279 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile