RNA id: XM_043233702.1


Basic Information

Item Value
RNA id XM_043233702.1
length 4554
RNA type mRNA
GC content 0.47
exon number 21
gene id nbr1b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12303364 ~ 12315046 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGCGTGGTTACGTCGCTGATGTAAACAGAAAGGACCATTTTGATCAGAGAAATCTAGAAGCCAGGGCACAGTAACTCATcaaaggttttcattttttcaccTATGCAACGCCTTAAATAGTTCTCGCGCCATGGACTTCTATATCAACCTGAAGGTGAATTTTCGAGGGAATGCGAAGAGTTTCTTGCTGTCTGGCTCGGAGACGAAGAGTTGGGAGTCTATGGAGGCCATGGTGAAGAGGTCTTTTGGCCTGTGTAATTTACAGCTGACATATTTCGATGAGGAAAACGAAGAGGTATCGATCAACAGTCAATtggaATATGAAGAAGCTCTGAAGAGTGCTGCACGACAGGGAAACAGACTACAAATGAATGTGTATGAGACGAGGGGCAGTAGAGCCACAGTGCCAGGACCGGGCCCACCACCAGGGTCAGGGGTGGGCTTGGGCCAGGTAAAACCTGGTACTGCTGGAGAACCCAAGAAGGGATTCAGGCCTCCTCAACACTGCCCTACTTTGGCACAAGTGGTGAGTCGCAAAGTTCAGGCCGCAGTCCCAGAGGAAGGATTGGTAATTGTAAATGAAGTCAAAGGTGGGAAGGCAGAAGATAAGACCCCTCCAGCTTGGTTCACGTCATATATGGAAAAGTTTAAGGACCAAGTTGTTAGGGAGGCAGTAGAGAAGATTTGTAGGGAGTTCTCCGGACAATGTTGTATCCATAAGCCAGTGGGAGCAGAGGCTCAGGTTCCCGAGGTCACCTCATCTACTCTCCCTGGGGCCCCAAGTTCAGCTCCAGCCTGCAGCAGCTGTCGGGGCCAGACCGCAGGCGGCGGATACCAATGCAGTGTGTGTACCTCCTGCACTTTGTGTGAGCCTTGCAGCTTCTCACACGATCCAAGCCACAACCTTGTGAGAGCTAGAACTCCCCTGTCTATTCCTGAGCATGGCTCCCCAGCTCCAGACCACAGCAGGTTCTACAGAAGGGGTGACCGGAGCTTTCGTAAGGCAGAGAAGCAGCGTCTTAAAGCAGAGAAGCGCCAACTCAAGGCGGAGGTGAAGGAGATCAGGAAGCAGCTGAGGATGGAGAGGAGAGGGCTGCAGTGGAGCACTGCTGGAGAAGGGAGCTCTTCACCTGTCCTGCTGCAGCCACGCGCCACACAGGCAAACAGCCCAGATCGTCCTAAACGTCCATGCCCACTGGCTGTGCCAGCTATGACGGCTTTACTCCTGGATGAAAACCTGCCTGATGGATCACGCTTGCGTCCTGGGACCAAATTCATCAAATactggaaaatgaaaaacagtggCAGAGTGTGCTGGGACTCTGAGACCAAGTTAAAGTTCATGTGGGGGAACTTGGCAGTGGGCTCCGGTGAAAGATGGCGGGAGGTCGCAGTACCCACATTACAGCCAGGCCAGGTGGGGGTCATCAGCGTGGCACTTTGTGCTCCGACGTTAGAGGGCACCTATACATCGCATTGGCGCCTGGCACATAGAGGAGAACAGTTTGGACCACGTGTTTGGTGTAGCATCGTCGTAGACCCACATGCGCCCACAGCCATCTGTGCTGACGGGCTACTGGTGTCTCCCTGTGTCACCCCACAGgAGAAGTCTTCCCGTACTCTTGAGAGGGAAGAGAAATGCCGGGCCTCAAGGGAACAGCTACTTTTGTCTGTAAACCAGGACTGTGATCAGGAGTTCTACATTCCATCTGTGGACTTACTCACAGCTCAGGACTTACTATCTTTTGAACTGCTGGACATCAACATTGTACAAGAGTTGGAGAGCGTGCCCAACAACACTCCTGCAGACATTACTCCATGCATATCACCTCTGCCCCATGATGGACCTCTTCAGGAGAAACCAACATTGGGACTCATCCAAGAGGAAACAGAAGCCCAAGGGGTCAGCAGCATCCTGGATGTGGCCCAGGGCACAGAGTTAGAAGGCATCCCAGCACAAGAGAAAGGAGAGGAGGGCATCATTGGGCCTCATTTTGTCAGTCCATCTGTTATCCGCTCTCTCACCCTTGAAGTGACCCGTGAATTAGCAGAGCATGGGGCACTTTGTGGGAGATGCCCAGCTAAAGTGGTGCGTCCGGCCCCCCAAGGCTCAATGTCCCTTTGTGAGAGGAAATCAGAAAAAGTTTCAGAAACAGGGCTAATATCTGCTCCAGCTCCCCTGAAAGTAGAATCAGCACAACTCTCTAGCCCTGCTTCACCACAGACCGAGACCACCGATGTAGCTGCTCCACTGCTGACGCTtccagcagagctcattagcacaGATGAGGGTCACGAGTCTGATATCGAGCAGATCCTGGTGGAACCAGCAGGTGGAGATCCGGTAGAAGAGGGAGAGGAGGAAGCGGCTAAGAAAGAGCAAGTGAAGGACCCAGGAGCAGCTAAGGAAACCCGCAGCAGAACTTCATCTGCGTCTTCAGAAGACTACATCATCATCCTCCCTGATTGCTTTGACACCAGCCGTCCACTGGGAGAGTCCATGTACAGCTCAGCCCTGTCGCAGCCTGGAGAAGAGCCTGCAGAGGGAGACAAACTAGAATCAGTGGAGAGCGCAGAGCTCCAGAGCCCcgtcgctgctgctgctgctgctgctgttagTGCGGATGCTAATGACATGCTCTGTGCCTCCCAGACTCTGGATGCTGTGCCGCTCACCCCTGTGATTGTAATGGCACCACGACCCTCGGTCAAAACCAGCTCAGAGACACAAGAGCAGATGGAACATGTAGCAGAGGAGCAGGACAGGAGTAATCCTGAAGAGCCAGGAGATAAGGAGGAAGACTCTGAGCCTAATCAACCTGATCCTGAGAACTCAATAGCATCTGCAAAGTCTGAAACAGAAGATCTTAGGGCTAATAGCATCACAGGTGGATTGGTGAAGGGTGCCCTGTCCGTGGCAGCATCTGCCTATAAAGCTCTTTTCACTGGACAGACTGGGTCTGAAAAGCTCCCAGAAGATGCAGCTTCTCATGACGCCATGATGGCCGTGCTGGTAGAGATGGGCTTTGGCGATCGAGCACTTAATCAGCGTCTGCTACAGAAACACAACCGCAACCTGCTGGACGTGGTAAACGAACTGGTGCAGATGACTGATAATGACTGGTACACTACACGCTACTGAGATGCTGGTCGACTATTTCGATTCTcttacatgtgttttttttttttctctttctctgtgcaaTCAGCAGCCCATTCCATGATACAGACTCTTTCGTTCCATTTGGGTTGTAAAGATAGTGTGTGTGAATCTGTCTGCTCCAACGTGTAACAGATAATCATTAGATGAGCAGTTCATCACCTTTATAACTGTGCTTGTTAAAAGTTTGTTGTTAGTGGGCattaatgttttcacaaagaTGATCATGGGTAGCTAATGAACACTAATAGGTAACTATTAATCCAAAACTATTCAACAAATATGccatgcttttaataaaaaaacttgatttgaaGGTATAGGTTAATTAATGACATATGAAAAACTTGCGActggatatttttaatatttagagtGTTTTGTGTTCCCAGGTTAAGAACAAGTTTTGGAAAAGTGCAATAGATCTGGCTTTGTGTGGACTCAGACCAAATAGACTGATAACTTTTTGTCATCGTTATATGGACTCAAGATTACAATTAAATGATTCCTTACTGGAGAGGttaatataaagttttaatttgttttattttttagtaattgaaacattttgaacCGTTGTTGCTTATAATACATGTTGGgattgttactattattattattattattattatgttaaagACCATTGATTTGTTTCTAAAAAGTCCACAAAATAGGGCACATACTGCACTTTGTGAATGCATTgccatttaaatatatgaaaaatgtcatgGCTTGAAGCAGCAATGCATTAGAATAGTTAAATggactgaaatgtattttaattcatgCTTTAAATGATTAAAGAGGCAAAGGCAATCATGacatatttaagtaaaatttgAAATGGTAAGACATGTcaaagtgagagagaaagtaaaTAACAGCCAACTGttcattccaaaaaaaaaaagagaggaaaaaaaaatcatgcaaattatatatatatatattttgataattaaaCAGCTCTTGTATTTAGCGTGATGAAGAATGTATCTCAGCACTTTTCTTCAATGGGAGATTTTGAAACTACCTACTGTCTAGAGTGTGGAAAGCATTCCCTATGATTCTTTAATAGCTCTTGATTTGCTCTTATCCATGAAGCTCTCACGAGTGGTACATCCATCATTTAACTGACCCATCACCCACTTGTTTTTCCAGAGGTAGAGCTTAAATATGTTTTAGCACATTCCCTAGGAAATGCAGTAAGTTGGTCTTGTTGCTTGCAGCGATCAGTAGAGGTTCTGGGTGGAAGTGTTTGGATCATGTGATTGTAAAGCATAATCAGTGGAGACAGATGCACCTCACTCTGTGTTTGATGCCTGAATGGAGTATTCAGTGTCTCTGCATCTAATGTACACATCTGTCTGTAATAAATATCCTAAGTCTTA

Function

GO: NA

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28700 lncRNA upstream 53368 12246208 ~ 12249997 (+) False LOC122341822
TU28736 lncRNA upstream 74845 12227935 ~ 12228520 (+) True G19287
TU28710 lncRNA upstream 168408 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 184590 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 185456 12117343 ~ 12117909 (+) False pax10
TU28784 lncRNA downstream 196880 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 196880 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 366212 12681258 ~ 12681565 (+) True G19579
TU29141 lncRNA downstream 367772 12682818 ~ 12686371 (+) True G19575
TU29234 lncRNA downstream 682171 12997217 ~ 13056733 (+) True G19656
XM_043228708.1 mRNA upstream 27006 12272640 ~ 12276359 (+) True rusf1
XM_043234610.1 mRNA upstream 35272 12259476 ~ 12268093 (+) True prr14
XM_043235469.1 mRNA upstream 44185 12253858 ~ 12259180 (+) True cd2bp2
XM_043229525.1 mRNA downstream 140963 12456009 ~ 12456909 (+) True hspb9
XM_043235773.1 mRNA downstream 159023 12474069 ~ 12477272 (+) True pyya
XM_043235771.1 mRNA downstream 162796 12477842 ~ 12490062 (+) True mpp2a
XM_043235772.1 mRNA downstream 162796 12477842 ~ 12490062 (+) False mpp2a
XM_043235143.1 mRNA downstream 204791 12519837 ~ 12528803 (+) True gtpbp1
TU28690 other upstream 202513 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 469441 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 469441 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 469441 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 933613 11368893 ~ 11369752 (+) True G18949
TU28786 other downstream 196880 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 196880 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 204791 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 520335 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 572111 12887157 ~ 12888061 (+) False LOC122332158

Expression Profile