RNA id: XM_043233704.1


Basic Information

Item Value
RNA id XM_043233704.1
length 2456
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122336412
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12315450 ~ 12320066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATAGGTTAAGTGCTGCGCTTGGTGACTAGTCGCTTGTGTGTTTGCTGTTGTTAGTTTGTTCTTAAAATCTTCCTCGGGGTTCTGCGGATTGTCTCCACTGAAGCAGCGATGGCAAGTCATGTCAAGAGCGATGAGCCTGGGTCTGTGGAGAAGGACAGCGCTTTTGCGGCACAGACAGACAGAGTGAACGTAACAGAAACTGATAGCATGAATCAAAGTGTATTCAGTCTGGATCCTAATGAGGAGTATAAGATGGACCACAAGAAGCGAGGAATGGCTCTGATCTTTAACCATGAACGTTTTTACTGGCAGCTCATGTTGCCCAGCCGCTCTGGCACAAATGCAGACAGGGAGAACCTTGTTAGAAGATTTCGAGATCTGGGATTTGACGTCAAGGCTTGCGACGATTACAAACGGGAAGAAGTTTTATCCACAATCGGAGAAGctgctgctgctaACCATGTAGATGCAGactgttttgtctgtgtatttttaagCCATGGGGAAAATGGTCACATTTATGCCTATGATGGGCAGATTGAAATTCAAGAAATCACTGATCTGTTCAAGGGGAATAAATGCCATAGCCTTGTAGGGAAACCCAAGATCTTCATCTTGCAGGCTTGTCGTGGAGACAAACATGATGATGCTGTGACACCAATGGATGTGGTGGACAGTCAGACGGTCAATGAAGTGGTTGTGGACGCGGGGGCGCTCTCCACCCTTCCAGCAGGAGCAGATTTCCTAATGTGCTATTCAGTAGCTGAAGGATATTACTCTCATCGTGAGACAGTGAATGGCTCGTGGTACATCCAGGATCTGTGCGAAATCCTGAGGCGTTACGGATCGACACTGGAGTTCACTGATGTGCTGACACTCGTTAACAGGAAGGTTTCTATCCGCAGTGTAGCAAACTGCAAGGATCGCTCTGCTATAGGCAAAAAACAAGTGCCTTGCTTTGCGTCCATGCTTACTAAGAAGCTATTTTTCAGGCCTAAGAAGTAATATTACTGTTCGGGCAATATTGCAGGTAAAAATTCAGggattatattattttattttcattttcaaaatggaaATCATGCAAGTTTGCATGTTTTAGCCTGGAGGTTTGACAAGCTCAGGGTTACAAAGTGCAAATAGTTTAACTTTACCCATTAATGATGATAGACATTAGGCTTCACTGTTTACACTAccaatacaaaaaatgctttaaattacCAGCAGGCCAAGATGAAGACAATTCCTACTACAAAACTACTTATAAGAACCAAAGAAACCTTGAAATGTATTGATATTCATTAAAGTAATGTGTGTCAATCCTGCGCATTACATTCATGATCTGTCATTAATAGCACTATAGCTTGATCTCTTTATCTGTGAGCCATGTATTTGTACCTCAAGATCTGTTAAGAAGCAATACAAAGGAGAAACAATACAAGAAACTCCAGTTAAACGGCTTTATTTGTTTACCAGCGTCGCATATAATTTTCATAGAACTGCATGGGGAATTTTGGGAATCTTTTATGGTACATGTTGTGTCTTAAATGTTGAAAAGAGTGACTTCTAGAGATCCGGCCACAGAGATGCACtacatttttacttgtttctGACACTACAGATTaaactaaaagtaaatatataagaTAAGAACTGAATGTCTTTACCCATCCTTTACTGAGCTCTGATCTTGTAGTGGAATTTATAATCTGGCTGTTTTAATGCATAGATCAGTAGCATCATGTTCATAAATGACCAAAGACtttgaatatttttcttatttaaaacttgattcttctgtagttatattgtgtagtATGAcctaagtaaataaaaagttgtcATTTTTCTAGGATGATATGACTATACCCTTTTTCTGGCATAATAATCAAAGAGGTTTGCTGCTGTACAGTTATAGTGCCTGTGCAAAATAGTCCCGAGCTTGCAAGACAGGTTCCATGCGGAAGCAagagggtctggctgttttcaAGCGCTGCAtgatatcactgcgcctgcCTCCTTGATTTATTACTCTGGAATGCGATTATAGTTCCATACATTGGCAAGAAAATTGCGACTTTTAATTTTCGGCTGGTCTTTTTACACGATATAACTAGAAGAAGAGTCAAGTTACAagtaggaaaaatattgaaaccgGTCCATTTCTGAACATGATTCCACTGGTCTAACtggattcagtgatctatgctaaaagtcgccagacctggagattggctgaatgaattcaaaaatggtaaaactctaGTCTAGTGGAGTTAGAAGACGAgcctatttacaaaaaaagtgttcctttaagaaggAGTTATTCATTTCCCGAGTAATGTGActgttttctgttctgtttggATTCCTGGGAAATTGGCTGTTGTGCAAAATACTGCATAAGTAACTTTCGCTTTACTCAGCATTTAAGACTAACTCTGTATTTGCTAT

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K04396 CASP6; caspase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248508.1 lncRNA downstream 20027 12294140 ~ 12295423 (-) True LOC122332655
XR_006250458.1 lncRNA downstream 44514 12267862 ~ 12270936 (-) False LOC122341243
XR_006250459.1 lncRNA downstream 44516 12267862 ~ 12270934 (-) False LOC122341243
TU28999 lncRNA downstream 44557 12265845 ~ 12270893 (-) True LOC122341243
TU29054 lncRNA downstream 85071 12226575 ~ 12230379 (-) True G19518
TU29090 lncRNA upstream 19636 12339702 ~ 12342331 (-) False LOC122342093
TU29186 lncRNA upstream 369554 12689620 ~ 12691332 (-) False cacna1aa
TU29337 lncRNA upstream 544244 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA upstream 544244 12864310 ~ 12886207 (-) False G19677
TU29346 lncRNA upstream 544244 12864310 ~ 12865162 (-) True G19677
XM_043234981.1 mRNA downstream 14877 12297054 ~ 12300573 (-) True aoc2
XM_043234747.1 mRNA downstream 24466 12288422 ~ 12290984 (-) True g6pc1b
XM_043234743.1 mRNA downstream 27576 12279708 ~ 12287874 (-) False kat7a
XM_043235875.1 mRNA upstream 2178 12322244 ~ 12332841 (-) False LOC122342092
XM_043235876.1 mRNA upstream 2178 12322244 ~ 12332841 (-) True LOC122342092
XM_043235877.1 mRNA upstream 19121 12339187 ~ 12343872 (-) True LOC122342093
XM_043235117.1 mRNA upstream 25369 12345435 ~ 12447724 (-) False rarab
XM_043235116.1 mRNA upstream 25369 12345435 ~ 12438498 (-) False rarab
XR_006250490.1 other downstream 394683 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 452487 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 587475 11715722 ~ 11727975 (-) False limd2
TU29176 other upstream 302717 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 661021 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 667284 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 685930 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 726975 13047041 ~ 13047494 (-) True G19700

Expression Profile