RNA id: XM_043233706.1



Basic Information


Item Value
RNA id XM_043233706.1
length 8728
RNA type mRNA
GC content 0.52
exon number 22
gene id setd1a
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12193978 ~ 12215690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCCGCATCGATAGTGCACCGGAATACAAGCGACGCTGTTTTAGAGCAGATTTAGGGCGCGTACCTTAAAACGGAGCGAGATTTTAACTAAggattgtgtgtttttctgcgCCGATGCAGGCCTAGCTGTAGCGAGCTAGCGGCTGCCGAAGCGGGCAATCCTCCTCAAGACGCGCGCTCCGCTGTTGATAGCATGGATCCGGACAGTGGGGCGGACACTCAGCGAACTCTCAGTCTGCAATGGAAGAGCTATAAGCTAGTACAAGACCCTGCTCTCCGACGGGTTACTCAGAAAATCTACAGATATGATGGGATTCACTTTAGTGTACAGGATTCAGGTTTTCCGCCTGTGGGGGACTTGCGTGATCCAAGACCGCGCAGAATCTGGTCTAGACACACAGAGCTGTCACTGCCAGTACCCAAATTTAAGTTGGACGAGTATTACGTAGGTCCTATACCGCTTAAGGAAGTGACGTTTGCGAGGTTGAATGATAACATCAAAGAGCCGTTCCTGGCAGAGATGTGCGCCAAGTTTGGTGAGGTTGAGGAAATGGAGATTCTGTTTCATCCCAAGACTCGGAAGCACTTGGGCTTGGCCCGCGTCCTCTTCACCAGCACTAGAGGGGCCAAAGACACCGTCAAACACTTGCACAATACTTCTGTCATGGGAAACATTGTCCATGTCCAGCTGGATATCAAAggCCAACAGAGGATGAAGTACTATGACTTGATAGTGAGTGGCTCATACACCCCTCAGACAGTGCCGACTGGAGGCAAAGCCCTCACCGAGAAATTTCAGCCCCCAGCCCCGACTCAGCCAGATACGtcGTCTGATATCCGGCGGAGGCTCTCCACAGACCAGATGGCAGCTCCTGCTGCGCCTCTAAACTCTGGCAGCACCACCCCCTGTTCTGTGGACACTGGATTTGGAGAGCAGCGCCTAGACACCCCTCCATCCTCACTGGGAGGACCCTATACGCCTGGTTCCTCTGCTTCTTCACAGGGTGGCGGCACCCCTTACACCCCACGCTCTGGAACCCCTTTCTCCCAGGACTCGGGATACTCTGTGGCCAGGCACAGTGGCTACAGCACCACTCAAAGTTATCCTCAGCAGGACATGCTTCCATCTTCCTCTTGCTCCTCTTCAGCAGTCTCCTCGTCATCAGGATTCAAGCCCCCTCGCTTTCACGACGACTTGCATGTTCCACCTCCCCAAGAACCCTCTGTGTTTCACAGGGGTCGGCAGGCATATCCTCCTTCAGTGCCCTTCAGACCTAATGAGCCTCCCTATCCGTATCCCAGTGTTGGAGGTTCAGGGATGCACATGCCACTGCATCCGCCCATGCCACCTCCAGGGCCTCAGTTTGAGGCGCCCCCACTGTCcgacagagacagagagcgagatAGAGAAAGAGGACACAGGGATAGAGATCGGGAGAGAGACTCAGGAGGGCGCTATGGAGGTGGGATTAGCTCCCGACGTTCCTCTTACCACTACCAACAGGAAACAAACTCCTCGTCCGCATCCAAATCCTACCATTCACATCACTCACATCACGCTGACCGGCGGGAAGACAGGGAAGGCAGGGGCTACCGGCGCGACAGCTCAGGCTCTCGCTCAGGAGATCACGGAAGGCATCGGAACCACCATCACTCACACAACCACCAcagcggcggcggcggaggTGGATCGAGCCGGCGGAGGAGCAGTAGAGACCGTGAATGGGAGCGAGACAGAGAAGGAGACTATAACAGCTCCGATCCACGTTACGGGGGCCACTCGAACTCCAGCCACCATTCGTCCAATAGCCTCTCTCCTCCCTCTGCTACCTCCTCTTATGGTGGATACTCATCGTCGAAAGACCTATCCCCCTACGACACGCCTTCTTCCTCCCGGCTAGAGCCCTCGCCGGCTTTCCGTCCTCAGCAGGGAGCAGGCGAGAGGGGTTTTGGGATGGGAGGAAACATGGACAATGACTACCGCGCGCATTCTCACCACACCCCCCTGGCTCCGCCGCCTCCACCTCCTCCCCTCCCGCCGGCCTCCGTCATTGCAGCTGCTGTGGCCGAAACGCATGGCTCTCTCGATTTTGGTCAGGACAGTCCCATCCGAGAGGAACAGTGGACCAAACCCAAGCGCTATCCGAGCACCCCGCCCCATCCACCTCGGACACCTCCAGCCTCTTCGCCACCTCACGCCTCAGTCCCTTCATCCTCCACTTCCCCCTCCTCTACCTCCCTGCCTCACCACCTCCCGTCTTCGACAGCATCCCTCTCTCCGCCTCCTCCACAGCGTGACTCCTCCCCGGAGCCTGACTCCACCAATGAGAGCCTGCCATTCATGCACCACAGCAGCAGCTTGGACTCACGTATTGAGATGCTGCTGAAGGAACAAAAAGCCAAGTTTTCTTTCCTTGCCTCAGACGATGAGGACGATGAGAAGGAGGAGGACAGGGAGAGGGGTAAAATAGGTGAGAATGCAGATGACGGGGGGAAGAAACTCAGAGAGGAGAATGGTGAAAGGCCTAGTCACAAGAGACACGGTGAGACGGAGGGAGGCCaacagaggaggagaggagagaaagatGGGCGCCGCAGCAGGGGTAAAAGACAAGGGGGTGGAGTCAGTGAAGGCAGGAAAACCCCTCCGGAGGTGGCCTCTTCCACTCCCACCACGCACAGTTTGGTGTCAGAGTCTCTTCAGGGCCAAATGCCGCCACCTCAGGAGGAGCACACAACTTCTGACTCACACAGGGCTCCGCACACCCCACCCATCTACAATGGAGAGGCACAGCCCTCTCCTCACTCCTCTGGGGAGGATATGGAAATATCAGATGAAGATGACAACGCCATCACCACAGCGACCCCTCATCCTGCTGCCTCTTCATCCTCCTCGCCAGCCACCTCTTCACAATCAGCCCTCCCCTCCCAAACCCCAGACCCTTCTGCGAGTCCCGCCCCAGACACCAACCAGCACTTCAGCGCCACCATGCCACCTCCGCCCATCCCGTCTTACCCTCCCCACCTCCCACCCCCACCTCTGCCCGGCTTCTCTCTGCAGCCCCCACCACCCCCAGGCATACCACCTCCGCTTCCTCACATGGAGCTGCACCCAGAGTACCCTCCTCCGCTACCACATCACATGTACGACTACGCAAGCTCCATGGAGCTCATGAGCCAGTACTGCGGAGGAGCACCCATGTCATTCCAGATGCAGACACACATGCTCAGTCGCCTCCACCAGATGCGAATGGCCTCTTCCAACAGCTCTACGGCACCCCCTGGTGAAGTCCCACCTGCCACTGAATATCCTCCGTCATTTCACCTCCATTCGATACCTCCTCCACCGCATCACCCACATCACCCATACATGGACCAAGATGGGAATGTTGCCACCCATTATGACCAGGACCACCGCTACATCCCTCCTCACTTACCATACGCCTATCCTGACCCCCACGCCGCACAGCTTCCACACCATCACACCATCCCGCCTCCCCACAGCCCCTGGCCTCCTCACCTGCTGCCCCAGCAGTTTCCTTCCCACTATCCTCCACCTGGCTTCAGCACAGTGCCTGGCGTTGATGGAGAGCTGTACGGAGCAGCGGGTGACCAGCTGGCCATAATGGGCCACAACCCCTATGAGGCTGTAGTGCAGCAGGTACTGGCAGCTTTGATCGAGGAGATGAAGAACATCATGCAGAGGGACCTGAACCGCAAGATGGTGGAGAACGTCGCCTTCGGCACCTTCGATGAGTGGTGGGACCGCAAGGAACAGAAAGCCAAGCCATTCCAGACAGCCATGCGAGGAGTTGCAGTGGTGCGcgaggaggagaagaaggatGAGAAGACCAGCAACCGACCTCGAGAGCCACTCATGTCTTTGGTAGACTGGGCCAAGAGTGGAGGCATGGAGGGTTTCTCCCTGAGGGGGGCCTTGTGTTTACCTTCTTTTAAGGTGAAGAGGAAGGAGCCTCAGGAACTTGTGGAGGGTAGTGAGCTGAAGAGAGCCAGGCCTTCCACTCCACCCGATGAAGAAGATGAGGactCATATCAGGGCAAATCTGCCAACTCTGCTGCAGGACGAACAGAAGAGAGGCGTGTGGGAGACAGAAGAGCAGCCAGGAGAAGAAGCAGAGCAAAGGCACGCAAACCATATGACCTGGACAGTGAGGGAGAAGAAACATCAGATGGTTCCTCCTCGGAGAAGgaggaggatgaagacaGTGACAAAGTGGATGAGTCAGAAGATGAAGCCCTTAGCGCAGACAGTGATGATGAAAGcatttcttcctcttcttctgggagctcatcatcatcatcctcagcatcgtcctcttcctctgatgaagaggatgaagaggatGGTGAACAGGCTGCTGAGAGTGAATCATTGGACACAATGGATGAGTCTACGATGGACAGCATGGCAGCTATAGATGCAGAAAAGGATGATGGGGACAAAGCAAGTCTTGACCAATCATCAGTGACTGCTGCAGAGGTCAAACAAGAAGAAGAGAAAACCGCTACAGCTGTGCCTGCATCTTCTCCATATCCCCGTCCTTCTTCACCAATTCTTCTCCTTCCCCCACTCAAGAAACGGCGCAAgactgtttctttctcaatggAAGAGAGCGAGGTCAAGCCCTCCATTCAGTCCCCTTCTGCTCCCTCTCCGTCTCCCACTCCTGTCTCACAAGTCTCAGATCTTCCTACTTCCTCTTCTCCTGTAAGCACGCCCACAGCAGCTGCTCTAGCTGCCTCCTCCAAGCCTGTTCCGATGCTTCTTCCATTTGCTTCTCGTCCCAGCGAGAGTAACGCCCTGGCCTCCCCTGCTTCCCCATCCTCTGTTCTTACTGTTCCTCCACCGGTGCGCTCTCTGCGGCCTGATGACCCCAAAAAGAGTCCAGGTCTCCCTCCATCCCCACAAACTCCCACTGCCAAAACCTCCTCCAAACGAGGAAAAGATTCTCCCAGAACGCCCCCTGCACCCATCTGCCTCACTGTCCAAAATCTTCCTCTGGACCACGCCTCCTTGGTCAAAGTGGCCTATGAGGACCCTGTCCCTATTCCAACCACGCAGAAGGGTCGTGCACGTGGTCGCCCTCGGACACTCAGTCAGTCCGCCCCTCACCTGCATCCTGCattggaggaagaggaggatgaagaggaacTGGAGCAGCGGCTGAAACTCAGGGAGCAGCTGGGAGTGTCCAGCTTGCTGCAGCTGGCCTCTGCCCCCAAGCCTGACCTGTCTGTGCTGGCCGATGTGGCGCTAAAGATGGACCCTGAGGCAGATATCGACTCGGAAGAGACTGAGACCTCCGATGAGGCAGAGGAGCACAAGCTggaggaagaagaaggagaCTTCTTTGCCCCGCACCCACGCCAACCACTCCCGGATCCAGAGGGTCTGTTTGTCCTGCAGGAGCACAACTATTCCAAAACTCCTGCTCCTCCGCACCTTACGTCTCCACAAAAGAGGACGAAACAGGACCCCACGGTCCTGCTTCCTGCCGACCTCAACCAGCACGGTGTTCAGGAAGCCCCTGAAGAGGTCATCGGGGATGCTCTAGCCGCAAGAGCAGAGGCTCCAGAGCTGTATGGGGACATCTCTGGGATGGGCCTACTCTGCGACACCAGGGACACAGCTGAGACGCAGACCAAGGCCCTCGGCCCACCGCACAAGAGGAGAGGATCGATTAGCAAAGAGATAGAGATGGAAGAGAGGGGGAAAGGAAAGAGCAAGAAGAGGAGTAGGAAGGACAAAGAAAATGAGGAACTACAAACCTCTAAGAAACAGAAGGAGAAACAGATTAAGAAGCAGAGGAAACGGAAGCTAGAGGAATATGAAGAAGAAGTGGATGTGGAACAGTTGGAGTCTGGTGAGCTTTCCAGCTCCAGTTCTGACTCGGGCGACTCTGAATTTGGTCTGGAGAGATCGCTGGAGTTTGAAAAGGAAGAGGTACGGAAGAGCGAACGACTTTTCCTGCAGGAAGCTGGCCTGACCCCCTCGACTCAGCGACGGCCCAAACACATGCCTGCGGCAGCTCTCTTACCACGGCCCTCTTACAAGAACCGTAGCGAGTTTGAGCAGATGACCATCCTGTATGATATCTGGAATACTGGCCTGGACCAGGAGGACATGAGGCTCCTGAAGAGCACCTACGAGAAACTGCTGCAAGATGATCGCGGCACCGACTGGCTCAACGACACACACTGGGTCCCTCATACCATCACCAACATCCCCAACCCTCGGCGGAAGAAGAAGACCCCAGATGGGCAGCTAAGAGAGCACGTCACAGGCTGTGCTCGTAGTGAAGGCTACTATGCCATCAGCCGCAAGGAAAAAGACGTCTACCTTGAACTAGATCAGCCAGTGACCGTGCAGGAAGCTGGGGAATATGATACCTCAAACTCGAATCGTCAGCTCTCTGAAAGGCGCTCTGAGCAGCGGCGTCTCCTCAGCGCTATCGGCACTCCAGCAGTGATGGACTCAGACCTGTTGAAACTGAACCAGCTGAAGTTCCGTAAAAAGAAGCTGAGGTTTGGCCGCAGTCGTATCCACGAATGGGGCCTGTTTGCCATGGAACCCATTGCTGCAGATGAGATGGTCATTGAGTATGTGGGACAAAGTATCAGACAGATGGTTGCTGATAATCGCGAGAAGCGATATGCCCAAGAAGGCATCGGGAGCAGCTACCTATTCCGTGTCGATCATGACACCATCATTGACGCAACCAAGTGTGGCAACTTGGCTCGGTTTATTAACCACTGCTGCACGCCCAACTGCTACGCCAAAGTAATCACCATCGAGTCCCAGAAGAAGATAGTCATATACTCCAAGCAGCCTATCGGCGTGAACGAGGAGATCACGTATGATTACAAATTCCCCATTGAAGAGAACAAAATCCCATGTCTGTGTGGCACGGAGAACTGCAGAGGAACCCTCAACTAAAAGTGTCCTAGACCTTCCCCCAATACATGACTTGCCAACTTTCCTGGCCCACGAGCTACTCTTCTCAGCGCACAACAATGTAGGTAGTGTGTGATGGGAGAACATCAGACTCTTTGAAAAGCTTCTGTACAGACACAGATGTGTAGAGATGTTTAATCAGATGTTTGGCCCAGGAGAGATCTCAGCACTGCCGCAACACCTCTAGTTCTAtctgtacaattttttttgttttgttttgtttttgtcccccACCTCCTTTCCCCCCTTTTGACCTGGTCCTTATTGATTTGGTTCCTCCTGTTGCAGCTGTGTTTGGTGGTGTTGTTTAGCCAAGTTTTATGCTTTGAATTGGTTCAGCAACtccacgcgcacacacacacacacacacacactctgctcaCTTATGCACATTATCTGACAGTGGCAAACACCCTTCAAGTGCTGGGTCTTTTTACCAAGGGCAACTTTTAAAGACCTACCTAAAAACATGGATTTAAGTCTTCACCCCTGTCATGAGAGAGAGTAGTAATTTTAGTTGATTATTTATTGTCCTTGTTCTGAGGCCCGTCCATTTGTGTCGTTCATTTAGGTTAGATACCTTCTTCAGATTATCTGTGTGGTGTCACCtctgccgtttttttttttttttttttacgttgaaGCTGTTTTGGcacacatttcttttgaaacttCCTCAAAGTTTAACCGATCTTAATTAAATGTCTCCTTTTCAATGATGTGCTGGTATTCAGAAATGGTCTAGCATTGTAAGTTGTTACAATTGTACATTTGCtactttatttttcacaaattagTTGTTACAATGCCAGTGCACTGTAAAAACTATTATTGCAGAGGTTATCATGCACCTGccatcattttaattcatccCTTACATGATGTGATATCCCTTTTTCCGTTCATAGTTTTTAGCAATACAAGAAGGACAGGACAGATAAGGCCGTCTTTTTTGCCGTGCTGAAATATATGCACATCTGTATTTTGCTGAAAGGATGGCAATATTCATTGGGTTTTCCTTTGGCATTAAAATTTTGTAGAGCGCTGAAGAATTGCGGAGGACTCTAGCTCCTCTGCTAAGGAgaatataatcataaaatacCTATTTCCTCATAGCTCAAGAGTCCAAGATGCAAAATTGGTTgggtatttatatatttttccaaaaaatccCATGTGCATGTGCTTAGATTCACTAGAACAGGTGGTCGTGCCTGTTCCTTCTGTTCTGTCCTTTCATATTACTGGTCATCCCTCTCTCTCGAGATCTCTCTCTGCTCCGCTCCGCTATAAATTGACATGTTGATAAGacattacattgtttttttccccttctttttttcctcgCTTCGTCAGAGGGCCTTGCCAGCATTCTGTTCCTTCGAGAGGAAAACCTGTAAAATATGTAGATTTACTGCAGTCTTTCAGTAAAAACTGATCCACAGAAGTGTAACCATATAAAAAAACggaaattgacaaaaaaaaagttaaaaagaattacatgtaaatattgtagAGGTGTTTGTTTCTCGTAGAAACACACTGGTTCTAGTCTGTAAATATGTTCATCCTTTTCCTACTTCCCATTGCAAGAAAATAATTGTACATACCTatcattcagttatttttgtttttgttgttttttttccttttaatttgatttaaagttttaatattatttgcaatatttctCTTGTATTAATGCGTTGGACCCTTTATTAAtggtgcattaaaatattttttaaaaaataa

Function


GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11422 SETD1, SET1; [histone H3]-lysine4 N-trimethyltransferase SETD1

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU28710 lncRNA upstream 59021 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 75203 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 76069 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 119475 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 120905 12072719 ~ 12073073 (+) True G19255
TU28736 lncRNA downstream 12245 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 30518 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 296236 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 296236 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 465568 12681258 ~ 12681565 (+) True G19579
XM_043235340.1 mRNA upstream 1835 12183251 ~ 12192143 (+) True fus
XM_043234668.1 mRNA upstream 11480 12179223 ~ 12182498 (+) True si:dkey-16l2.17
XM_043234060.1 mRNA upstream 16249 12174276 ~ 12177729 (+) True kat8
XM_043234043.1 mRNA upstream 20104 12168881 ~ 12173874 (+) True rnf25
XM_043234932.1 mRNA downstream 921 12216611 ~ 12230379 (+) True hsd3b7
XM_043235468.1 mRNA downstream 16737 12232427 ~ 12247044 (+) True LOC122341822
XM_043235469.1 mRNA downstream 38168 12253858 ~ 12259180 (+) True cd2bp2
XM_043235470.1 mRNA downstream 40218 12255908 ~ 12259180 (+) False cd2bp2
XM_043235471.1 mRNA downstream 40385 12256075 ~ 12259180 (+) False cd2bp2
TU28690 other upstream 93126 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 360054 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 360054 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 360054 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 824226 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 87674 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 296236 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 296236 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 304147 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 619691 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile


XM_043233706.1 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

XM_043233706.1 Expression in each Bioproject

Bar chart with 2 bars.
XM_043233706.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.