RNA id: XM_043233723.1


Basic Information

Item Value
RNA id XM_043233723.1
length 4394
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC122336725
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25586523 ~ 25604509 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAAAGAACCGAAGCACGCAGGTGAAACTTTAAAGGGGCTCGACCGAGTTGACCGTCCGCCGCCTTCGCGTCCAGATTTCCAAAACTATCCCCGAAAACATGCCGAGATGTCGAGAGGAGCACGGCTGCCGATAGGATCCCGAAGTTGGGACTTTTATGTCAAGCAATGAGAGGCTAACAAACCTGTAGATTTTTCTGGAGATTCCTGACCATTGCGTCTTCGTAGCACGTATTGCATCCATTCCTTCTTACCACAAACCATCTCCATCATCCCACACCCGTAGTCATCATGACGACCTCTTCTTTACGGCGGCAGATGAAGAACATTGTGAACAACTACACGGATGCAGAGATCAAGGTCAGGGAGGCCACCTCCAACGACCCGTGGGGCCCTCCGACCTCGCTCCTGATGGAGATCGCAGACCTGACCTTCAACGTGGTGGCCTTCACCGAGGTCATGGGCATCATCTGGAAGAGGCTCAACGACCACGGCAAGAACTGGCGACACGTCTACAAGGCCCTCACTCTGCTGGACTATCTGATCAAGTCAGGATCGGAGCGAGTGGCCCAGCAGTGCAAGGAGAACATCTACGCCATCCAGACTCTGCGGGATTTCCAGTACATCGACCGGGAAGGGCAGGACCAGGGCATGGGCGTGCGGGAGAAGTCCAAGCAGCTGGTGGCTCTGCTCAGGGACGACGAGCGGCTCAAGCAGGAGAGATCGCAGGCGCACAAGACCCGTGAGCGCGTGGCGGGAACCGGCGCTGCCATGGCTTACGGATCTTTACCGCCTCCCTATCCGGGACGTCAGACCGCTCAGCCCAGCGTGGAAGCAGTGTACGGGGAAGAGCATGGCAGGGTGAGGCACTCACCTTCTTCCTTCAACTcctcctcttcctcccctCATCTGGCCCCAGATCTGGAGCGCGCCCGGCCGCAGACGAGCGGAGAGGAGGAACTCCAGCTGCAGCTGGCCTTGGCCATGAGCCGAGAGGAGAGCGAGAAGCCGGTCCCTGCTGTGGATATCGACGAACAGACACAGCTTCAGATCGCTATGAGCCTCAGTAAGGAGGAGGCGCACAAGCcagctcctcctccacctcctcctgctgctgctgctgctctggaGATGGATGAAGAGGCACAGCTTCAGCTGGCCCTCACTCTCAGTAAAGAGGAACATCAGCAGGAGGAACGAAGCCGGCAGGGAGACGAGTCGTTGCTCCAGAAAGCGCTGGAGGAGAGCAAACGAGAAATGGAGGCCAAAGGAGGACGATCTGCCATGCTGGATCTTGCAGATATTTTTGCTCCGGCTCCTGATGTGCCCTCTGCTGCCGGCTCCTGGGATTCGTCCGGAGGCCGTGGTTGGGCTGGCCCAGGCTGGTCCTCTGAGGCCTGACCCTGGGATAGTCTAGAGCCCAGCTCTTTAAGCCGTCATCGTGGAAGCTCGTGGATGGCACCACCGTCATCAAGTGTTCGTTCCCAGCCTTGGCCTCAGCAACAGCCCCATCCGGACCCGTGGGACGCCCCTCAAAATGCCCCGAGCCCCGTGTCCATGAATCAAACCTGGATCTCCTCTGCACCTGGAACTGGAGTGGATCCCTTTTCTCCTCTAGCAGCAGACAAACAGGGATCCATTGGTCCTCTTAAAACCCCATCCCCTCGGGCAGGAAGTCCCTCAggCGACGATCTTTTGATGAGGCTATGGATGGAGAGTCAGGCAAATATAAATGGTCACAGTAGCCCTGAGCCTTTTGATATGTCTTCCCTTGGCGAAGGTCTACCAAAAACAGCTCCTCGAACCTGCAGCACTCCAGAGGCGTTTCTGGGTCCCACAGGAGCTTCACTCGTCAACCTGGATTCCTTGATTCCCTCCAACCCTCCTTCCAAGAACTTCAACCCCTTTTTATCAGGAATAACCGCTCCATCGGCCTCCAATCCATTCCAGCAGGAACCTCCCCGTCTCACACTAAATCAGATGCGCCCCAGCTCCACATCTCCTATACCTACATCCCTCCCATTTAATGCCTCTCTGCCCATGGCTTCCAGCAGCCAGCCCAGCTCCCTGCCCACTACCTTCACACAATCCGCGCAGGTCCCGCCGCTGGTCCCCGGACACCTGCCCCAGCCGCTGCTCCCCCTGTCCACGACATCCACGCTCGCGGATCCAGACCAACACAATCAGAACCCCTTCCTATGAGCAGATCCAAACAAGCTTTTGAAATGACAATTTAACCACCGACTTGACTTAAAACTGGAATACACTTTTTAACGCCTTTTGCTTCTTTCACAGCTTCCTGGTTTTGCTCTATGCAGTCACTCGTAAGAGGCGTTCACACGTACAGTGGTTTACAGCGACGAAAATCTGTCGTTTTTGACGATGGTGGCACGTGGTACAGATATGTGGCGGTATATGATGTGAGAAAGTTGACATTGAAGaactagtaaaaaaaagaatgactttTGTTATTTCCCAGACACACCAAGCCAATATCAATGGCGAAAACCACCTAGCGTCGTCTGTCTGGACCAAAGATTTCCTCTTGAATGCTTTATGAAGTAACTCCAcaccagcaggtggcagtaGTCTGTacttatcataaaaaaaacaaaaaacggaaGAGCTACGACTGTTAATATACAAACTCCCTTCTGTAGGTGCCCTCCTGACTTTGTCATCGGCTTGCCTtcgtcattttagtttttattttgtgcattttataacACGCGAATAGCCAAAATTGCACGATTTTGATGCCTAGTCAagttatatttctttatatagtgATATATCAAGGTAGTCAACATAAATACAAGAGTCTTTCGTTATAAAATAGTTCATTCGAAAatgaaagggatagttcaccaaaaatgaaaatgctgtgattaatcactcaccatcatgtcgttccaaacctgtaagaccttcattcaccTTTGGTGATTGATATTTGGATAttggatatttttgatgaaataagAGAGCTTTCTgtccctccatagacagcaaaacaaagaacacgttcaagacattgttaaaacagtAACCGGTACAAAGCTACGAgaatgaacaaaggtcttatgggtttggctCCACTTCGTTAAATGTTGATTCAACGATGCGTTGCACATTGCACGAATTAAGCCAACAGATGTTCGATGACGACCTAAAACTAGCTATTGGCTTGGTGTGTCACGGCCTTTGAGGCCCCGGTGTACCTCAGATTGGAATCAAACGACAAACTAACGTCATTTCAACCAAAATCAGgacaaaataaagtttgtttacagtttttgacATTTCGAAACAGCTTGCCAAAGCAAACGTACTGGAAAATTCAGTCCAGGTGGTAAACACACTTGAATTACCAGTCGGTGGTGATTATGTAATAAGTGGGTGTGACTCTGTGGCTCCGCCTTCTTTGACATATATATCATGGTTTATCTCTTCTGTTCAGTCAGATGATcgttacattaaaaaacagaaagaaatgcaCCGGAGATCTGCTTTGCAGTAGAAATTGAGTCGAAAGCTTGcaacacatatttacatattcatataattaagcTCCCAGCCTCCAATGCGGGTATATCGAGGCCTTTCCTGTCAGCAAATTAAAAGCTCTTTAACTAGTCTCCGCTCAAGTAAAGATTTAGTTAACACGCTTTATTTGCAATCGgacttttaaaaagatttggCCAGTTGTGCAGCCCACCGGTAACAACATCCAGCAATAAGAGCATCCACACTGACCGCCGGTCCAGTCATAAATCACTGTATGCGTGAGCGCCCTTCGACTATAATCATGTGTGAATGTCAACTACGCATTACACGGCAATACAGATTGATGTCGGCTTTATaagaaatgacaaataaaaggcacaatttaaaggttaaaaatatttaatcccACAGCATCAGCGTCACCTTTAAGTATTATAATAGTTTTCGGGCAAAAGATAACACACTTGCTACTCGTAACATAAACCCCAGTACATAACCAAGCACAAGTCCAAAGCCTCTTTCCGTTTCGATCCTATCCTCTGATTCCCTGCACCAGTTTCGAGCTCCGCTTCAGGCGTCCCTTTACTGTTCTGGAGTATCTGATGACTTTCAATGCCGTCTTTTATTTCCTCTTCGCCGGTGTCTGAACGGCGGATCACATCCCGATGGGTCACTCGCACCACGATCACGGCTAcaagcaaaatataaagtataaatggCGATTTTGTAATATCGGGCATTGACTGTTGAATGAATTGACCTCCAGCAAGAGAATGTACTTTACCGTGGTGTTCGGACTGAACTGATGCCACAAACTAACAGAACGTAAGAATGTGAGACTGTTGCACATGTTGCTCTTCAAAAATACAAGGATGAAGATGAAACGAA

Function

GO: NA

KEGG:

id description
K12471 EPN; epsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34339 lncRNA upstream 17120 25524326 ~ 25569403 (+) False tob1a
TU34333 lncRNA upstream 66775 25514214 ~ 25519748 (+) True G23106
TU34262 lncRNA upstream 139253 25445299 ~ 25447270 (+) False G23061
TU34285 lncRNA upstream 151975 25430474 ~ 25434548 (+) True G23069
TU34278 lncRNA upstream 155103 25430474 ~ 25431420 (+) False G23069
TU34385 lncRNA downstream 8715 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 26630 25631139 ~ 25767050 (+) True G23125
TU34419 lncRNA downstream 30115 25634624 ~ 25727704 (+) True G23127
TU34418 lncRNA downstream 42677 25647186 ~ 25725255 (+) True G23126
TU34430 lncRNA downstream 89977 25694486 ~ 25694868 (+) True G23135
XM_043229171.1 mRNA upstream 9509 25573757 ~ 25577014 (+) True LOC122331665
XM_043234957.1 mRNA upstream 58485 25524309 ~ 25528038 (+) True tob1a
XM_043234970.1 mRNA upstream 102079 25455162 ~ 25484444 (+) False spag9a
XM_043233718.1 mRNA downstream 4971 25609480 ~ 25611691 (+) True LOC122336618
XM_043233719.1 mRNA downstream 8650 25613159 ~ 25615628 (+) False LOC122336634
XM_043233721.1 mRNA downstream 24390 25628899 ~ 25630633 (+) True LOC122336676
XM_043233716.1 mRNA downstream 92362 25696871 ~ 25699105 (+) True LOC122336602
XM_043235543.1 mRNA downstream 116338 25720847 ~ 25722746 (+) True LOC122341871
TU34364 other upstream 9480 25575976 ~ 25577043 (+) False LOC122331665
TU34266 other upstream 139253 25411918 ~ 25447270 (+) False G23061
TU34263 other upstream 139253 25445299 ~ 25447270 (+) False G23061
TU34203 other upstream 600606 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 774946 24721526 ~ 24811577 (+) False G23026
XR_006249348.1 other downstream 8727 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 8765 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 56539 25661048 ~ 25662317 (+) True G23121
TU34366 other downstream 56539 25661048 ~ 25662317 (+) False G23121
unassigned_transcript_295 other downstream 100146 25704655 ~ 25706218 (+) True LOC122341888

Expression Profile