RNA id: XM_043233742.1


Basic Information

Item Value
RNA id XM_043233742.1
length 3085
RNA type mRNA
GC content 0.40
exon number 2
gene id si:ch73-248e21.7
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12132596 ~ 12136213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAAATGAAAGTGATTAGTCTTAGTAGATTTCTGCTGAAGTAAAGTATcgtcagaaagagaaaaataaagtcaaagtCAAGATATGTGCACATGTAAAATGCCTAAATTAACCTTTTTGAACTTGCAGTTGGTAAGGTTGCCAAATCCTGTATTGATTTTAGATATGTAGTAATTTAGATTGTGAAACATGAAATGACAGGATGCACATTTCAAGAAGTGTTTGAGCAAACCTTATTCTATACAAAAAACGTTCACACTTCTCTAAGTTTGCAATACTCTCCACCCAACAAACACATACTCACGCACGTATACATGTACACACGCACAAGTGCTCGCACATAGATGCTTAACAGCAAAGATATGCAGACAAAGCATAGTCAAAAGCCTCAAAAGTGTCAACACACCCTGCACAGAGCTTCCCATTAGAGCCTGGCTTCTCTTTTTCTACTTCAGCCTCAGATAATAATTCATGCTACAACATAGCACTTTTGacacgttttttgtttttatctttctgCTGCAGCCTTTCTCGGCCAGACGCAAGCAGTGATAAGACATCTTCAGAGGGAGGAGAAATGAAAGAGGGCATAGAGGagtgagagaggaagagaaattAACAGGATATAGGTGTGCTCTGCATGTGTGAGTTTGTAGATTTTCACATGTGCAGTTTGGTCTCGGTGGTCGGAGTTCGCAGTGACTTTTCTCAGAGGCATGAAGTTGAAATCGTCCATATTACActgagagaggagaaagaggaagcTACTGGTCTGTGTAAAACTTTCCGGCCCAACACAACATTACCTCTATAAAACATCAACCTCGCAGAGAGCGAGCACAAAACATGAATTTCTTCTAACAACTGCTTCCATCTAACGTATAGTCAAGAGCTTCTAAACACGTTCGCGAGGTTTAAAAGTGGATCTCCAACCACAATATCAGCTCACCCAGGTTGCCTGAATATTTAAATCGCTATAAGAAGCTTCTAAACTGAGAGACTTTTTTAGCCAGTATTTTCATCATGAAGCTCATTTTGGGTAACTTGCTTCTGTATCTTGCTCTTGGACCCTGTTTCAAGTCCACTGATGCGCAAGAGACAacgacagagacagagacagacgaAAACATCACCATCacgttacaaaataaaaacattgtggaGCCAACGTTGAGTTCTGAAATCCTAAGTGCCACATCTGAAAATACAGCTACTCTACAGACAGATCTGCATAATACTGAAACCACagctattaataaaataaacaccatGTCTGAGGAAACAACAGGGGGGAGTACTCCACCATCGATCACTGAGGTTGAACTAACATCACTAGAATCTGTTCCTGAAACAACACCTGGGCAAACTGAGCCGATCACAGTGAGCACCTACCTGCTGCCTGTTAATGTGGAGACAACAGTGATTACTCTAGGTGCCCCAAGCACTATTCAGCATGAAACGACTGTTAGCTTCACTTCACCTGAGCCAACCAGTCCCACTGAAGGTCCTACAGATGAAATCACAGCAGCTGATGCCATGACCACTGAATCAACAGAAGCCCTCCATCCCACATCCATCCTAACCACACCACCTGCAGACGAGACTGAGTCTACGTCCATCATTTCGATGTCGGACCCTGTGGACACCATCACTGAGAGCTCCACTACATCAACATCAACTACACTGTTCCCTGAAAACACTGCTAATTACCCAGAATCAGAGTCAGTCTCCACCCTTTTCACCACGACACCCACCATGATTATTGGGGAAAGTACTATGCCTTTCAAAAACAACtggctattaataataatagtatttgtGGCCATTATATTCTCGCTGTGTGTAGGTGCGATTTTGTTCGCCCAGCGGcgaaagaaaaacacagcaagGAATTTCAGCCCCATGTATATGAATGGACAAAGTAAACggtccaaaaagaaaaaagggatggAGGATGATGCGTGGGCGGGGCCTGTCAACCTGGAGGCGGGGCTTGAATGTGACGGTGAGGTACAGGAGGGTTTTCTGCCTAATAATGGGAAACCAGATGGAGACGATATGGTGCTCAGCACATTCGTTGCTCTGGATGCAGGAGAAGAGTCTAACGGTGGAGTGGGTGGGGACGGTACCAAGGAGGCTAAGAAATGGGAGGAGCAGGAGCCTCTGCTTTATATAGATGAGGATGTGAATGAAGGCAAGCCTGAAACAACACCGGAGGAGAGTGAGGGacagaaaggaaaggaaaaaagtgAAGAGAAGGGCATGAACGGAGGAGAAACGTTCTGTCTCACCACAGCTGTCTAAAAGTCTTCTGTTGACTAAATGAACATTAAGGAATTCATTGGAATGACTTGATTACGTAATTTATCCTATAAACAAGGACTAAGTAATAGGTTTTGTATATGTTATTTGACTATAGCAGTTCATTATTAACAATGGTGCAGTTTTGAATAATGTTCTAAAATTGATACTCATTTTCCacagttgttttatattttaaagtgggGTCATATTAGCAAAAGTTCTGCCAAATTTTCCTGgcaaaaatagtaattattgtCAATAGTGTACTGATGTGTGAATCACAGTTTATAAAGAAATTCATTTTGAAACCACACAGCAAAATGGCCAATTCATATGACCAATTGAACCCATTGGAAAATGTTTGTGGGGAAAGCTTTAACCCCTTATGTAAATTTGCAGACTGTATGGATTGCTATTGAAAATATGGATTTCACCAATGAAAATTTGTCAAACAATGTGACCTCACTTTTAAGATGAGATAATGGCTGTATTAATTAAACATCATCATTCATCCATTTCCAGTGTTTGCTATAATGTATAGTCTTTATCCTTTATCTAAAGATACAGTTGCTACAGAAATTAGCTTATTGAcagtgaattaaattaaatttaattgattaattgattatgGCACAATGTTGATGTCAAAAAACAACAGCTAAAGATTTTAAGACTTACATTCTGAGAAAGAAACTTTTGTTTACtgtgagcataaaaaaattatggcATAGAATATTAATGATggcaaaatatgtaataaaatgtttatattttaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28992 lncRNA downstream 35234 12092899 ~ 12097362 (-) True G19463
TU28978 lncRNA downstream 46375 12085329 ~ 12086221 (-) True G19453
TU28954 lncRNA downstream 87196 12044649 ~ 12045400 (-) True G19436
TU28944 lncRNA downstream 105656 12026364 ~ 12026940 (-) True G19427
TU28939 lncRNA downstream 109169 12019583 ~ 12023427 (-) True G19422
TU29033 lncRNA upstream 46045 12182258 ~ 12182484 (-) True G19503
TU29054 lncRNA upstream 90362 12226575 ~ 12230379 (-) True G19518
TU28999 lncRNA upstream 129632 12265845 ~ 12270893 (-) True LOC122341243
XR_006250458.1 lncRNA upstream 131649 12267862 ~ 12270936 (-) False LOC122341243
XR_006250459.1 lncRNA upstream 131649 12267862 ~ 12270934 (-) False LOC122341243
XM_043233745.1 mRNA downstream 797 12127010 ~ 12131799 (-) True tspan4b
XM_043235898.1 mRNA downstream 25912 12102942 ~ 12106684 (-) True rcn3
XM_043235417.1 mRNA downstream 73047 12049457 ~ 12059549 (-) True si:ch211-195b15.7
XM_043235719.1 mRNA downstream 139433 11989102 ~ 11993163 (-) True prmt1
XM_043235759.1 mRNA downstream 166648 11949110 ~ 11965948 (-) True brsk1b
XM_043235776.1 mRNA upstream 505 12136718 ~ 12140766 (-) True si:ch73-248e21.5
XM_043235473.1 mRNA upstream 110541 12246754 ~ 12249930 (-) True mylpfa
XM_043235472.1 mRNA upstream 115704 12251917 ~ 12255778 (-) True pheta2
XM_043234746.1 mRNA upstream 140622 12276835 ~ 12279429 (-) True zgc:113090
XM_043234744.1 mRNA upstream 143495 12279708 ~ 12287876 (-) False kat7a
XR_006250490.1 other downstream 211829 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 269633 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 404621 11715722 ~ 11727975 (-) False limd2
TU29176 other upstream 486570 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 844874 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 851137 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 869783 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 910828 13047041 ~ 13047494 (-) True G19700

Expression Profile