RNA id: XM_043233745.1


Basic Information

Item Value
RNA id XM_043233745.1
length 1738
RNA type mRNA
GC content 0.39
exon number 8
gene id tspan4b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12127010 ~ 12131799 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGAAGTTATTTGGaacaagagagggagaaaaataGCTGATAGAAAAGATAGAAAGCCAGGGAGAACCAGAAATTAGTAATTAGGGTTGAGGGAACACACTAACAAGCAAGCAAATACTTTGATGTTGTTTGTTACCTAAAAAAGAAAGTATATTTTGGAACTTCAAGAGAAATCCGGGAGAGAAATAACAGGAGTCTGAAGGaattaaacaacaaagaaaGGAAAGCCTATGAAGAATTCTGTATCCCACAAAACTGCAAGACCGATATTTCAAGTTCATCTGCCTTTATGTTTTTTGCACCTTATGAAGAGTCATTAACAACCAGAAGAACTGGAGGAATCCCATCTGCAATGTGGATCATTTTGTtcgatgaataaataaaacaagatctCATGAACTTCATCAGAAAGACAATACAAAAAGCTTTGGATTCAGGACAAAGTGAAACTCAACTCTATTCATAGAAACTCTTCAACTGCCTGTCAGTCACTTTTTCTGTCTCCATCTCAATCAAGAATGTCTGTGTCACGAGGTTGCCTCTGCTGTGTGAAGTACCTCATGTTCATTTTCAACCTCATCTTCTGGTTGGGAGGATGCGGTTTATTTGGTGTTGGGGTGTGGCTCGCCTtcacacagtcagagttttcATCTCTACCCCTGTCCTTCCCTTCACTCTCTGCGGCCAACCTACTGCTTGTTGCTGGAGGCGTCACCATGATAACAGGGTTCCTCGGATGCCTTGGTGCCCTGAAAGAGCAGAAGTGTCTGTTGATGACGttttttgtgATCCTCTTGTTACTAGTCCTGATAGAAGTGGCACTGATTTTGGTTTTGAGTTTGTATCATGAAGAGTTGGACAAGAAAGCCAAGGATGACCTTAGGCAGGGAATGACAGACTATCTTAGAAACGAAGGGCTAAAAAAATCCTGGGACAACATGCAGAGAATTTTCAAGTGCTGCGGCGTAAGCAACCACACTGACTGGCACAACAAAACACCCAACGGCAAACCACCTGACTCCTGCTGCAGAGAAAATACCGATCGCTGCCATCACTGGGAAGAGccGTGCTATGAGAAGGCCAAAGACTGGCTGCTGGCTAACATCACCTCAGTGCTTGGGTTTGGAATTTGCATTGGAGTCGTTCAGATTCTTGCTTTGGTGTTCTCCATGCTGATGTACTGCCAAATCCTGCGAGCAGAAAAATACATGGACTGACCCTATCTTCGTCCCATTGTGCCAGGGGCTCTTTGCATCACATTTCTGAATATGTAATAATTGTTTATCAATTGCCTATTAGAAAGACTGGATATGCATGTGCACATAAATTATGCAATTGCACTTAGGAAGAGGCTCGGATGAATTTAATACAAGTTAATTTACCAGGTAAATGCCTAAATAATGACTATGTGCTtcgaaaaatattaaatgaatataaagtgaATGTATACCGTAGGTGGAAAAGTAAATCCTAGTATTATTGCACTCTTTAAATACCCTTATAACTGCTTGCCGTGAACTTGTGATCACaagttaatttcttttaaatgaaaatcatttgatTTGTTATACCACACTAATTGTATGTATTATATGAATGTCTGTTAAGGTCACTACAACTAAATAAGGATGCAATGCAAGTAGATGAttgaaattgtgtattttggtATAAAAGTcacataaaaattcaaaacatccaaatgataaaaaaataataaatacatcagCATAAAGACCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06497 CD63, MLA1, TSPAN30; CD63 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28992 lncRNA downstream 29648 12092899 ~ 12097362 (-) True G19463
TU28978 lncRNA downstream 40789 12085329 ~ 12086221 (-) True G19453
TU28954 lncRNA downstream 81610 12044649 ~ 12045400 (-) True G19436
TU28944 lncRNA downstream 100070 12026364 ~ 12026940 (-) True G19427
TU28939 lncRNA downstream 103583 12019583 ~ 12023427 (-) True G19422
TU29033 lncRNA upstream 50459 12182258 ~ 12182484 (-) True G19503
TU29054 lncRNA upstream 94776 12226575 ~ 12230379 (-) True G19518
TU28999 lncRNA upstream 134046 12265845 ~ 12270893 (-) True LOC122341243
XR_006250458.1 lncRNA upstream 136063 12267862 ~ 12270936 (-) False LOC122341243
XR_006250459.1 lncRNA upstream 136063 12267862 ~ 12270934 (-) False LOC122341243
XM_043235898.1 mRNA downstream 20326 12102942 ~ 12106684 (-) True rcn3
XM_043235417.1 mRNA downstream 67461 12049457 ~ 12059549 (-) True si:ch211-195b15.7
XM_043235719.1 mRNA downstream 133847 11989102 ~ 11993163 (-) True prmt1
XM_043235759.1 mRNA downstream 161062 11949110 ~ 11965948 (-) True brsk1b
XM_043235310.1 mRNA downstream 178455 11924369 ~ 11948555 (-) True cpt1a2b
XM_043233742.1 mRNA upstream 797 12132596 ~ 12136213 (-) True si:ch73-248e21.7
XM_043235776.1 mRNA upstream 4919 12136718 ~ 12140766 (-) True si:ch73-248e21.5
XM_043235473.1 mRNA upstream 114955 12246754 ~ 12249930 (-) True mylpfa
XM_043235472.1 mRNA upstream 120118 12251917 ~ 12255778 (-) True pheta2
XM_043234746.1 mRNA upstream 145036 12276835 ~ 12279429 (-) True zgc:113090
XR_006250490.1 other downstream 206243 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 264047 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 399035 11715722 ~ 11727975 (-) False limd2
TU29176 other upstream 490984 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 849288 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 855551 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 874197 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 915242 13047041 ~ 13047494 (-) True G19700

Expression Profile