RNA id: XM_043233759.1


Basic Information

Item Value
RNA id XM_043233759.1
length 2715
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC122337169
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21363439 ~ 21366154 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTCTTTTCTGTACCATAGATGAGACTGAAAGATCAAATACAAACTCTATGAGGATTCTACTTATTGGAAAAACTGGAAATGGGAAAAGTGCCACAGGAAACACTATTCTCAAAAGAAAGGCATTTAAATCTCAAGCCAGTTTTAAATCAGTGACATCCTCTTGTCAGAAGGAGGTGGGGTTTGTTGATGGACATTCAGTCACTGTTGTTGATACACCAGGTCTGTTTGACACACAAGTCTCTACAGAAGAGGTAAAACAAGAGATAGTGAAGTGCATCAGTCTCCTCTCTCCAGGACCTCATGTGTTCCTTCTGGTGCTTAGATTCGGAAGATTCACTcctgaagaaaaagaaactctGAACCTGATCAAGGAAGCGTTTGGGAAGAACGCTGGAATGTTTAGCATCATAATATTCTCTCATGGTGATCAGCTGCAAGATCAGACAATTGAGAGCTGTCTGGaaaaaacagattcagatATGAAGAAGCTGATCAGAGATTGTGGAGGAAGATATCATGTGATTGACAATACAAAACCAGACAATTCTAAACAAATCACTGACTTGCTGGAAAAAATCAACTGTATGATTGAAAAGAATGGAGGAGGGTGTTACACCAATGAGATGTTTGAAGAATCAGAAGGTGCCATAAAACTAGCAATGGAaagaatattacagaaaaagaaagaagagatggaaagagagaacAAACGTTTATGTGACAAACATGAGTTGGAGATGGCAGAGATGAAGAAAAGAATAGCAGAACAAAGAGAGTTATTGGAAAGAGAAAGGAAGGCAAAGGAAGAAGAACTCCAAATCAAGGAAGAGTTCTTGCAAAATGAACTTAAGAGAAGGGATGAACAAGAaaagaaggagaagaaagaaagacaagaagCTGAAGACCTTAGAAGAATAGAAGAGGAGGATACACAGGCACTATGGAAAAGGAAACTACACGAAATAGAAGAGAAACGAAGAAGATTAGAAGAACAGCAACAGAAGAGAGACCAGGAATATAGAGAGaagtatgagagagagaggacagaaaTGGAGGAAATTCATAAAAAGAGACTGAGGAGAGAACATGAAGAAGAATACCAGAAAAGACTTAAAGAGGAGAGGAGTGAATGGGCACTAAAAGAGAAGATGATGGTTGAAGAATTtgaacaagaaaaaagaaaaagagaagaaaaagaacatgAAAGGATTAAGAATGAgcttaaagaaagagagagaatagagagaGAGTATGAGAACAGTAAAATAGAGAtgagaaaacagagagaagaatGGGAAAAATCATGGAATGAAGAATGGGATAAAAGAGTGagagaagagaaggagagaagggatgaagagagagagaaactgagaAAGCTTGAAGAAGCATTTCAGCGAGAGCgtaaagaggaggaggagaagaggaagagagaagatAAAGCCCGACGAGAACAGGAGGAGAAAGAACGAAAAGAAATGGAGGAAGAATATGAAaggaaattaaaagaaatgaagagaaAGTATGAAGATGAGGCCAGAAAACAAGCAGAGGAATTCAATGATTTCAGAGAGAAATATACTAAAGACTTTCATGTTCTCATGGTAAAGCATGACTTAGAGATGCAAGAGCTAAAGCTAAAGcatgaaagagagaaacaaaaacagtgcACCCTATTGAGTGAACTCTCAAAGCAAAAAGTTAAAAGTCTGAATGAAAAAATGGAAGCAATGGAAGAGCAACATCAAAGAGAGGTTGATGAGCTGAAGAAGAAGTATGAGTCCAAATGTGTCTTACTGTAATACTGATATCTTACTATTTATAGCCTGACATTAGAAGATTGAAGTGAGCATCTTGTATGtgctttaaaggggtcatgaactgaggTCATTTGACATACACTATTCTTGCGGGTTTGACCAGTAGTGTCCATCTATGAGGAATTACCATATTTCATATCTCTCTCTACTCCCAGATAAATATTGTatcctttttaaaacattttttataaggGTTTGTATGGACTGTCTCCATATATCCCAAATATCCCCGATCTCCTATAGCGCCTACAGGGAACTTAACTACTAGTCTTCAGTTGACTGATCTAAAGACACTTCTGAAATCATTTCTAATGTCTTTTTAGTAGCTGCTCCACAACTTTGCCATTCTATATAAGATATGCACCAACATATGCAGACATTATTATATGCAGAAATAGATCACCCAATAAtgtctgtcataatttactcacgctcaagtagttccaaatctgtatgaatttgatatttgtatgaagatattttgaagtaaGTTattctatggaagtcaatggtgactaTGAATTAATCAAACTGCCACTATCTGTAACTAGCTGTAGGcctataaatagcagaaaatccTGCTCAGATGTCACAGACATCTGATGAAAATGTTAGATCATTTTATGTGCGATGATCACCAAGCAATAATTTGCGATTAACATCCATTTCCCATTTCAAGCAATATTTTCATgtaaagctattttattttattttattttttcaatttacttGGGTGGCTTAGGTGGACTACCAAGTAAACCTACAGCCTATGATAACCtacagatatgaagctggatatgttgttttgaaaatctcccagcatattaatattgttttgaagtcataatatgatattcttcaagtaattgtgcaaaaatttcactttattaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32753 lncRNA upstream 20170 21247604 ~ 21343269 (+) True G22046
XR_006249615.1 lncRNA upstream 71504 21290414 ~ 21291935 (+) False LOC122337857
TU32802 lncRNA upstream 71517 21290349 ~ 21291922 (+) True LOC122337857
TU32784 lncRNA upstream 93947 21263598 ~ 21269492 (+) False LOC122337912
XR_006249646.1 lncRNA upstream 94468 21253746 ~ 21268971 (+) True LOC122337912
TU32803 lncRNA downstream 15654 21381808 ~ 21383124 (+) True G22084
TU32955 lncRNA downstream 269590 21635744 ~ 21636079 (+) True G22197
TU32956 lncRNA downstream 269969 21636123 ~ 21636570 (+) True G22198
TU32959 lncRNA downstream 367984 21734138 ~ 21734422 (+) True G22201
TU33101 lncRNA downstream 611464 21977618 ~ 21979015 (+) False wnk4b
XM_043234697.1 mRNA upstream 325 21354367 ~ 21363114 (+) True LOC122341347
XM_043233793.1 mRNA upstream 20191 21330331 ~ 21343248 (+) True LOC122337639
XM_043233794.1 mRNA upstream 22959 21330328 ~ 21340480 (+) False LOC122337639
XM_043234696.1 mRNA upstream 33883 21316273 ~ 21329556 (+) True LOC122341346
XM_043233801.1 mRNA upstream 116631 21244992 ~ 21246808 (+) True zwi
XM_043233803.1 mRNA downstream 22993 21389147 ~ 21403118 (+) True LOC122337825
XM_043234698.1 mRNA downstream 63528 21429682 ~ 21437955 (+) True LOC122341349
XM_043233991.1 mRNA downstream 75768 21441922 ~ 21444741 (+) True LOC122340007
XM_043234699.1 mRNA downstream 81017 21447171 ~ 21450709 (+) True LOC122341350
XM_043232034.1 mRNA downstream 271589 21637743 ~ 21734127 (+) True crhr1
unassigned_transcript_291 other upstream 1049108 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1175356 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1176241 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1255603 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 1295438 20066130 ~ 20068001 (+) False LOC122341338
XR_006248723.1 other downstream 271589 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 609098 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 610355 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1162835 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 1180004 22546158 ~ 22547208 (+) True G22329

Expression Profile