RNA id: XM_043233782.1


Basic Information

Item Value
RNA id XM_043233782.1
length 2062
RNA type mRNA
GC content 0.50
exon number 3
gene id tmub2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20784533 ~ 20789004 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACTCTGACGGAGCGTCAGCTGTATGCGTGCGCGTGCGCGTGAGGTTGTacgtgtgtttatttatttctgagcAGAGCGTTTCGTCTTTCAGCCGGTGTAGGGATTAAAACAGCATCGATCCAGAATGATCTGAAGTAAGAGAAGGTCGAGAGGGGCTGGGATGGCGGTGTGTGCTCTAACTGTGCTTGACGGGCTCGGGGAGGAGGCCACGGCTTTGGGCGGCGTGGTCGTCCTGTTCCTGGCCGTGGTTCTTGCCTGGCTGTCTACCCACGTGGCCGACCGCGGAGATCACATTCTGGGGACCATTCTCACCGTGGGCGCCCACGCCTCCCTCATCGGCCTCGGGGGTCACGACAGCTACTCCAACCCCCCGCCCAGCTCCGAGCCCAGCGAGCAGCAGGACGAAGAACCCGCCGAGGAGGAGAAGCAGGAAGAGGGAGAGGCCCGGCCGGATGGGGGAGAGGATGTGCCTGGAGAGGAGCTGCTGGATATTCAGGGTGGGAGAAAGAAAGTCAGCTATGTTCGGGGTGATGAAAGAGAAGAGGGCAAGGAGGAAGggacggaggaggaggaggcagaGGATGAGGCCGCCAGTATCACTGTGAGACTGAAGTTCCTGAATGACACGGAGGAGCTGGCTGTGCTCAGTCCACAGGACACCGTTGGACTGCTGAAGAGTAAGTACTTCTCTGGCCGTGAACATCAGATCAAGCTCATCTACCAGGGTCAGCTGCTGCAGGACCCTCAGCGCTCTCTCCTGTCCCTCAACATCACCCACAACAGCGTCCTCCACTGTCACGTCTCTCAAGCCCAGGCCCTGCGCGAGGCGGCCGCAGAAGAGAGCCCTCGAGCCGGCAGGGGCTCCATGCTCAGCGGGGGCCTGCGCTCGGCCGGCGTGGCTCTCAGCACAGGAAGCCTGGTGATCCCCGTCTTCGTGGTGCTGCTCGCCGTCATCTGGTACTTCCGAATCAACTACCGTCAGCTGTTCACTGCCCCCGCCACCATCTCTTTGGTCGGGGTCACGGTCTTCTTCAGCTTCCTCATCTTTGGCATGCACAGTCGATGAGAAGACGGACGAATGGGAGGAACGATGCCAATCTTTTGGGAAAGAGGAAAACGAAACGATAGGACGTGAAAATAATCAATCAGCGGTAGCCGAGAAAGTTCTCAGGGAGCCCTCGAGGGTCCTGGTGCCATTTAGACGACCGAAGTCGTGCGTGTGCTGAGACGTGTGCTAGTGCTTTCAGCTTCATTTGTGAGCAGCACAAAGTAACACCGCTATATAATTTAGCTTCTTGGAGAAAATagctttataattatttaatctcAGCCTAAAGTGTAGCTTCTCTGTGTAAAGCGAAGTCAGGAGCCCATGTCTGGCTGGGCTTTTCATTTAGAGGAATCGTCGACTGATTGGTTTTTATCAATTACGCGTCTCATCTTCACTGGTAATAGCGCCACTATCTTTTGCAGAAGCAGAAAACGTCACATGTTCAAAATCTCAGTACACAAATAACAGGTGTGATGTGCTAGTTAGAAAAATATTGAGACatcattttacttgtttatgttttttcttttgccaGTGTCACTGAAATCAGTATTTATTTCAACTTAACATTCTGGTTTAGCATGTCCGCTGCTAGTTATAGGTCGTAGTTATTTAGGACATAAGAGTTTTTATACATGAAGGTTTTACCTGCAAACATACTGGAGTAAAGAGGCTGTAGAAATCCGCATTAATAGGCATTTCATATGTGACACTGATAACAaagcaaatgatttttttctcctgtGTAAAATCTGTATATAAGCAATGTATTTACTGTAGATAAATCAAAAGGGCATAGAGGAACCTTAAAGCTCTCTTAAGAAGTTTGGTGGTTCTTGTATGAATGGGTCACTTTTCTCAGTATTGTCGGCAATATCTGCATACGTTTTAGGGGGAAACCAGTCTACCTTCTCATTCTCGCTATAACTAGCGCCTCTTTAATTCAAACGATTTTTGGTTTTGCTTTGATGCAGTAATTCAGAATAAAATTGCTCatctttcagaaatga

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32301 lncRNA upstream 13009 20771124 ~ 20771524 (+) True G21740
TU32300 lncRNA upstream 13652 20770657 ~ 20770881 (+) True G21739
TU32294 lncRNA upstream 46308 20737977 ~ 20738225 (+) True G21733
XR_006249635.1 lncRNA upstream 57974 20720573 ~ 20726559 (+) True LOC122337901
TU32278 lncRNA downstream 34271 20823275 ~ 20903541 (+) False G21722
TU32272 lncRNA downstream 37858 20826862 ~ 20907982 (+) True G21719
TU32328 lncRNA downstream 93194 20882198 ~ 20956574 (+) False LOC122337427
TU32330 lncRNA downstream 167658 20956662 ~ 20957326 (+) True G21761
TU32734 lncRNA downstream 304662 21093666 ~ 21094831 (+) True G22033
XM_043233768.1 mRNA upstream 145 20780215 ~ 20784388 (+) True asb16
XM_043233766.1 mRNA upstream 16934 20743788 ~ 20767599 (+) True vat1
XM_043233749.1 mRNA upstream 73487 20686238 ~ 20711046 (+) True mrc2
XM_043233750.1 mRNA upstream 73487 20686239 ~ 20711046 (+) False mrc2
XM_043233758.1 mRNA upstream 101047 20666904 ~ 20683486 (+) True tlk2
XM_043233778.1 mRNA downstream 134493 20923497 ~ 20955984 (+) True LOC122337427
XM_043233790.1 mRNA downstream 241620 21030624 ~ 21058249 (+) True LOC122337590
XM_043233801.1 mRNA downstream 455988 21244992 ~ 21246808 (+) True zwi
XM_043234696.1 mRNA downstream 527269 21316273 ~ 21329556 (+) True LOC122341346
XM_043233794.1 mRNA downstream 541324 21330328 ~ 21340480 (+) False LOC122337639
unassigned_transcript_291 other upstream 470202 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 596450 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 597335 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 676697 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 716532 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 506698 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 848739 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1186248 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1187505 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1739985 22528989 ~ 22530060 (+) True G22344

Expression Profile