RNA id: XM_043233823.1


Basic Information

Item Value
RNA id XM_043233823.1
length 1784
RNA type mRNA
GC content 0.43
exon number 5
gene id kdelr2a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25450395 ~ 25454405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCACGTCGCCCCTCTTTCGCCATATTTCGTGGAGGAATGCTCTGGAGGAGAGCGGCATTGAGCCGGTTCACAGCTATCGCACTCATCCCGAGCTCTGTTTCACGCCACTAAACccagccagagagagaaaggcatCATGAATATCTTTAGGCTGACTGGAGATCTGTCTCATCTAGCTgccatcatcatcctcctgcTTAAGATATGGAAGAGCAGGTCCTGCGCAGGAATTTCTGGGAAGAGCCAGATACTCTTTGCCTTGGTGTTCACCACGCGGTACCTGGATCTCCTGACGTCCTTCATTTCTCTTTACAACACTTGCATGAAGGTAATCTACATCGGATGTGCCTATGCCACAGTCTACCTGATCTACGCCAAGTTCAGGGCGACTTACGATGGAAACCACGACACTTTCAGAGTTGAGTTTCTGGTGGTTCCAGTGGGAGGTCTGGCCTTTCTGGTCAACCACGACTTCTCCCCTTTGGAGATTCTTTGGACCTTTTCCATCTACCTTGAGTCTGTGGCTATCCTGCCTCAGCTGTTCATGATTAGCAAGACCGGCGAGGCCGAGACCATCACTACCCACTATCTGTTCTGCCTGGGGGTCTACCGTGCCCTCTACCTCTTCAACTGGATCTGGAGGTTCTACTTCGAGGGCTTCTTTGACATGATCGCTATCGTGGCTGGGGTCGTCCAGACTATCCTCTATTGTGACTTCTTCTACCTTTACATTACAAAAGTGCTGAAAGGAAAGAAGCTGAGTCTACCAGCCTAAGTGCCAAAGAACAGAGAGCTGTGTCTCCATCAGACTTATAGAGGGGCACAAGCCAATGATGCCACCGCAAGATGCCCAAGACAAAGAACGCATAACGCCAGTTCAATCACTGATTTATTTCTCTCCGCCTGGACGCTAACCATCCCCTTACAGAAACGAGGACGTTTTTGCAAACTTTTCTTCTGTCTTTAGCATCTTgcaatgcgtttttttttttttattgctattgaaaagaaaaagaagaaaaaaaaaaacaacttttctaTATGCAAGGTGTATTGAAATATTGAACAGTGCATTGTACACATTAACAGTTAAATGCGTCATTGTAAATTTTGTCCTTGATTGGAAATAGTTCCCAGAGTCGGATAATTTTGCGGTTCTTTCCTGATTTAAGAGGGGGGGAAaagtgaaatgtgtgtgtgtgtgtgttcatgaattcaaattattacatCCCATTCTTTATTTCCCCAAATTGTACAGATGGTAAAATCATCCTTTGCTTCGGTGAACAGTTTTGCCGCCACTGAAAATTTTCGAAAAAAGAAAGTCCTTTTCATTTAGTTTCCACACAAATGCCTTATTTGTATTTCAGTTCATGTACAGAACCATTTTTGTCGATGCCCCCAAAGCAACAAGTCAACTGTAAATAAGAGAGCACTTCGTGTTTCATTGAGCGCGGTCCTCTTTCGTTTGACCCATATCATTTTTAAGGATGATACCAGCTGCTTTAAACATTCGGTGATTACCTGCAAACGTCAGCTTGTTGAAATGCAGTAATTTGTGGTAAGACCATTAAATCTAGTGCTGTGGATTCAGTCAAAGCACATTTTGGAGTGAGTTTTGTAgaatagaattattattattatttttttttttttttaacggacTACAACTTGTTTTCTTTACGTTTAACATCCCCCAATGTTTTCCCCTCTCGAGTCATTCCTGTAGGgtttacagttatttttctagtttttacatgtcttcaataaatattttaagggA

Function

GO:

id name namespace
GO:0006621 protein retention in ER lumen biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046923 ER retention sequence binding molecular_function

KEGG:

id description
K10949 KDELR; ER lumen protein retaining receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34258 lncRNA upstream 3125 25411918 ~ 25447270 (+) False G23061
TU34264 lncRNA upstream 3125 25411918 ~ 25447270 (+) True G23061
TU34262 lncRNA upstream 3125 25445299 ~ 25447270 (+) False G23061
TU34285 lncRNA upstream 15847 25430474 ~ 25434548 (+) True G23069
TU34278 lncRNA upstream 18975 25430474 ~ 25431420 (+) False G23069
TU34333 lncRNA downstream 59809 25514214 ~ 25519748 (+) True G23106
TU34339 lncRNA downstream 69921 25524326 ~ 25569403 (+) False tob1a
TU34385 lncRNA downstream 158819 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 176734 25631139 ~ 25767050 (+) True G23125
TU34419 lncRNA downstream 180219 25634624 ~ 25727704 (+) True G23127
XM_043233824.1 mRNA upstream 5849 25442610 ~ 25444546 (+) True ndufb10
XM_043234952.1 mRNA upstream 13245 25436163 ~ 25437150 (+) True fahd1
XM_043236009.1 mRNA upstream 20330 25423943 ~ 25430065 (+) True narfl
XM_043236008.1 mRNA upstream 20330 25424003 ~ 25430065 (+) False narfl
XM_043235731.1 mRNA upstream 75897 25346786 ~ 25374498 (+) False arhgap17b
XM_043234972.1 mRNA downstream 755 25455160 ~ 25484444 (+) False spag9a
XM_043234978.1 mRNA downstream 755 25455160 ~ 25484444 (+) False spag9a
XM_043234969.1 mRNA downstream 756 25455161 ~ 25484444 (+) True spag9a
XM_043234971.1 mRNA downstream 756 25455161 ~ 25484444 (+) False spag9a
XM_043234973.1 mRNA downstream 756 25455161 ~ 25484444 (+) False spag9a
TU34266 other upstream 3125 25411918 ~ 25447270 (+) False G23061
TU34263 other upstream 3125 25445299 ~ 25447270 (+) False G23061
TU34203 other upstream 464478 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 638818 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 640432 24721526 ~ 24809963 (+) False G23026
TU34364 other downstream 121571 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 158831 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 158869 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 206643 25661048 ~ 25662317 (+) True G23121
TU34366 other downstream 206643 25661048 ~ 25662317 (+) False G23121

Expression Profile