RNA id: XR_006249731.1


Basic Information

Item Value
RNA id XR_006249731.1
length 8727
RNA type transcript
GC content 0.44
exon number 7
gene id kcnc3a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11773200 ~ 11833924 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGGAACAACACAGAGGGATCCCATGTCACCATTAGATTAAGGAATAAATTGCATGGAAATAcagatttacaaaacaaaaccatcgacagaaaaaaaggaagggaaaaaaaaacgaacggAAGAAATAAGAGAGGCAGCTTAAGGAATAACATTTCTAGTCGTGCCCGGCAAGCTGCTTGTTCGgcataaataatttcaaacagACATCAGTCTGCAACTAAAGACCTGGTTACGGTCTTCTTAACCCTGGACAACGGGAACAGGTGAAGATACGGAAGAAAGGATGCTTAAACTGAGAAGAAAGGGATAGACTGTTAATGGAGTGAGTGCATGAAGATCAAACaaatagagaaagagaggtgTTTCCCCGCTGCACGTTTCGTTTGGTTGAATAGACTGTTTCGTGTAGGGAATAAAAGTAAATGGTTAACACGAGCtttgttaaataatacaaattccCTGGTAAGAAATGCTAATTTACAAggcaaatattttttgatattaGACCTGCAACGTCTGTACATAGCgagaataatttatttgaggAACGGGGATAGCAAAGGTGCAACTTAGgagatgaattatatttttagccTTTTGTATCACTAAAAGGAACTGACCTACGCACTATAGCACAGTTGCGTTATTTTCAACTAGCAGGTGTTGTAGCAAGAATATTCTGCATTATTCATAACTGTAGCCATTTTACAGAGGACAAAATCCTAGGTTTCTGCACAGTCATTTGGACCAACGCCAAGAGGATCCCTCCGTTCAGTCAGAAAACGTAGTAAATTCCACGTAGCGTTTTTGTGCAgtttgtgtgttcatgtgtgtgtgttcagtgacaCGCACACTGCACTCACGCGAACAGAGCCAGACCCAAAGCGAGCTCCTCCTCCCCCCCTCCCCTCTCggttctctctcctcctctccctccccCTGCTCCTCTATGCTCAGTTCGGTGTGTGTCTCCTCTTTCAAAGGGCGCAAGGGTGGGAACAAGTCGTCCAACAAAGCATGTTACAGCGCAGACATGACTTGTCCGTCAGACAGCGAGAAAATAGTGATAAACTGCGGGGGGATTCGGCACGAGACGTACCGCAGCACGCTGAAGACGCTGCCTGGGACGCGCTTGTCCTGGCTCACGGAGCCAGATGCGTTCAGTAACTTTGACTATGACCCCAAATCCGATGAATTCTTCTTTGACCGTCACCCCAACACCTTCGCTTTTATCCTCAATTATTACCGCACAGGGAAGTTGCATTGTCCCAACGATGTCTGCGGTCCTCTCTTCGAGGAGGAGCTCGCGTTCTGGGGTATCGACGAGACAGACGTGGAGGCTTGCTGCTGGATGAATTACCGACAGCATAGGGACGCCGAGGAAGCGCTGGACAGCTTCGAGACGCCCGAGCCGGACCCGCCAGAGGACGACCCGGCGCTAACGGGTGGAGCGGACGGGGATTTGAAGAGGTTGTGTCTACAGGAGGATGGTCGGAACCCCAGCTGGTGGAGTACCTGGCAGCCGCGCATCTGGGCGCTCTTTGAGGACCCCTACTCCTCCAAATATGCTAGGTATGTGGCGTTCGGCTCGCTCCTGTTCATCCTCATCTCCATCTCAACATTTTGCTTGGAGACACACGAGGCCTTCAACACCATCTACAATAAGACAGAGAACGTGACGGTGGGGAACGTCACGCGGGAGGAGGTTGTGTTTGAGGTAGTGACTGACAGCTGGCTGACCTACGTGGAGGGCGTATGCGTCATCTGGTTCACCATCGAGGTGTTCGCCCGTGTCATCTTCTGCCCGGACAAGGCCGAGTTCTTTAAGAGCTCGCTGAACATCATCGACTTTGTAGCCATCCTGCCCTTTTACCTGGAGGTGGCGCTGAGCGGCCTCTCCTCTAAAGCGGCGAAAGACGTGCTGGGCTTTTTGCGAGTGGTGCGATTCGTCCGAATCCTGCGAATCTTCAAGCTCACGCGTCACTTCGTGGGGCTGAGGGTGCTGGGTCACACGCTCCGTGCCAGCACCAACGAATTCTTACTTCTCATCATCTTCCTCGCTCTGGGGGTGCTCATCTTCGCCACCATGATCTACTACGCCGAGCGCATCGGCGCCGACCCGGACGACCCCACGGCAAGCGCCCACACCGCTTTCAAAAACATCCCCATCGGCTTCTGGTGGGCGGTGGTCACCATGACCACACTGGGCTATGGAGACATGTATCCAGAGACATGGTCTGGTATGTTGGTGGGTGCCCTATGCGCTCTGGCGGGTGTGCTGACCATCGCCATGCCTGTGCCCGTCATTGTAAACAACTTCGGCATGTACTACTCTCTGGCCATGGCCAAGCAGAAGCTGCCCAAGAAGAAGAACAAGCACATCCCGAGGGCTCCGCAACCTGGATCGCCCAACTACTGCAAGCCAGACGCCCTGGCTATGGCCACTGCCTCGCCGCACAGGATCATGGGTAATGTGCTGGGCAGTATGGTGGTCTCTGGAAGCATGGCAGGAGACTGTCCTCTTGCACAGGAGGAAATCATAGAGATTAAcagagcagACTCCAAACAGAATGGAGATGCTGCAAATGCAGCTCTGGCTAATGAGGACTGTCCCACTATAGATCAGGTGCTGGGGCCAGATGACAGGAGTCCGGCCACCGGTGGGCTGGGGACATGCACGGGGCGTGAACGTTACCCCCATGATAGGGCCTGCTTCCTTCTCAGTACCGGAGAGTTCCGCACCACAGACAGCAATGTCAGGAAAGGAGGGAACATTGAATGGATGCTGGATTGACAGCGAGAACTATTCTGAAAGCCCAGTGCTTATCAGATATATGCAAAAAGAAGCAGTAACTGTGAACTAAGACTAGAACAGAAAATCCACTTCTTCCTTCACAAATACATTCCCAAACGAACACCTGAGCCCCCAAACCAGTATCAGCTCCCGCACAAGTACATTTTAGTTTGTATTCTCATCTCATGGCATCATCAATCTTGTTTAATCATCTtagttttgcattattatagAGCAGATTAGTTGTTTTCCTCCCCCTTGCTGTTGTCTTAACCTCAGCTctagctccctctgctggttttACGGGGGATGACGTAGCATTCGCTGTTGTAGATCATTAGCACTCTTTTGTCACTTTAGAGGCTAAGAATACCTCATTTTAGCCCTTATCGTTTACCTGTTATATTTAAGATTAAAGAAAAGACTCTttaggcatttatttgaacagacTCAGACCAGAAGGAGTGATTTCCTGTTCACTAAACACTGAtcagagcagagagaaagaagctAATGCTAACAAGTCTGCTCACTGCAACAATGCATGTTTCCACACATTCGAGATAGCTAGCACTTAGCATCCCTAGTGCATTTTGTGGTTTTGCTGTGTGTAGTCTATCTGTTAAGGCGTAGTCAGGGTGAACAGAGTGGATGGGATGGCTCCACTTTTATCCCTTTATCTCATTTCTGAGGTTACGATGTGGACGAGACAGGCCTGCCACTAGTTAGCTGAGTTAGCGAATGCCCTGGTAAAAGCAGAGGCTGCATGTGATCACGGAGGACAGTGTAAATAATTCTCTGCATGTGGAGTTAACAGCACAGAAACTATTGTTCGATCCAAACTTGGCATTCAGAATAGGGAGAGCAGGTTGAGTTCAAATGATTTAGCGACATTATCCAGAATCCTCTCTGTTTCTGACTTACGCTCCCCTGTCACTACTCAGGTAAATCTCTTTTTGTTCGTCTTTACCAGTGCTTCCAAAATGATGTCATTCGAATCAAAGAGAGAGGCAGATGAGAACTCCCCGCATACGCATgcatttgtgtaaataataaataatcatgtttgATCCTAATGTTCATTCCAAGTCTTCCTTTTCCACAGTGTCCTCACCcttcatttcatcatttcatcCGTCACTGTCATTCATTCCCAACTCTTACTGCTTCCAAATAACAACCAAAAAGCCCGGATGACATTATGAAAAACTGAGGAAAAATAATGcgatatgtttaaaaaaaaaaagagagggaacTTTTTGATGACGGTCTACCATAAGtggattacaaaaaaaaaatcctgtataTGGAATCAGGACGCAACCAAATTCAGGAGATGAAAGCATGAGGGTCAGATGGACAGATTGTGTGTTTGGGGAACAGAGTTTTGGGAGGATTGTCAACAAATGAAGAAAGGCGTCGTGAAATGGAGGACAGTTtggggaagaaagaaaaaaagcaaagagaggAGGAAGGGAGCTGAACGCTTCTCAGTGTAAGAATTGCTGAGCTTCTGAACTGCCCCTTTTCTAAAGCTCCCCAACCGCAAAACCTGTCCAGAGGCAACCCCCAGGGTCACCGCAGGATTAGAGACGGCGAAAGAGAGAAAACGAGAGATGAAAGGAGTGCTTTGCTAAACCGACTTGAAGACAACATTGTAACGCTCATCTCTCCATCACTAATTTTAATCCCCAACGTAGGTGCAATAAACTGACAATATCACATCCTGGGAGGATGTGGAACGCATTCTTCTTACAGGGATCGCTGGCCTTGGAAAACGGGTGGGATTCAGCATACAAACTGTAGTATGTCCTGACTCAACCTGGTGGAAATGGATGCAATTTTAAAGTGACGGGAACTATTTTTGTGGGGCGTTCCACCATGATAATGCACCTGAAAGTGGACAAAAAACCCTCGATCCAGTCTCAGATACATGTAATGTGTGGAAAAACACCCATCATGCCCTTCAACGCTATGCAATTCAAACACACGTTGACAGTCAATTTCATCAAGCGCTTCAAACAAACAGTTTATCAGCCAAACCTTTTCCGCTCCTTTACCTTTTGGAGATCTTGCACGTGCTTTAAGTGAAAATAGACAGCGGCGCCATCGGCCTGCCATATTCCTATATCGTAATGTTTCCCCATTCATCCAATTGGAAATCTTGTTCAGAGTGTCCTTCTCAGGGCTCACAGAAAGATGACTTTGTCCACTATGAAGAAAAGAGCGTTagcctctctcttttctctctctcttagttCAGCTCTCTGCATCTCAGCATTTCTGTTCCACTGTAGATGAACTGCATggcatgaatgaaaaaaaaaaagaaaaacaaaaacaaaacagagagaaagatggTAGAGATCATGCTGAGAGGAACAAGAGGAAACCGTAGACGGGACCGCTCTGTTTGCACAGTACAATATGGGTGACTCTGGATCAGTGGATGGGGTCACTTTCTTCACCTTCAAGTGGGGAACAGAAAATACAACATAAGTGCATGATACCTGTTGAAGGACAGAGGGGTTTTTAAGTGGACTGGGTGAACTTTgaacaaaagctgaaaaaaaaagagaaaattaaaaaatgcatttttctcacTTTGTTTACCAGCATGACTAAACTGCATGACTTCTGCAAGCCCTGAACCCCAAATTAGAGGGCTTGAAATCACTAAACGCCGAAATCAAACGGAAACAATAAAAGTTTATGCTAAATGCTactaaatttagaaaaaaaagaatatatttaaaaaaagagaggctctatattttgtttttgaataaaaaaaaaaagaataatgtaaaaatatataggaTTGCAAGATTCACACAGTTTTGTTGGGTAAAAGATTAACAGACCCCACTGAGTCTAGCTGAATGATGAGACGAACTCCTTCAACTACTACTGCTCCCTCTCAATGGCTTCAAGTGACATTTCTTCCCTTCTCTTTGTCCTCCGTTTCACCCTTTACTTGAACTTTCCTGGCTCTCTGCTCTGCCCTTCACAGTCTCCCTCAGTCATGGCAGCCTCCAGCAGCGGCACCACAGCTCCTCTGGAGACCTCCGACACCTACAGGGCTCTTTTCATTCGACGGTTATGGGTCTGAAGAGCAAGGTGAAAGAGGATTTTTAAGGCTGTGGGtgaagttttctttttaagttgCGTCCCGATGGAAAGTTTTTGGCTTGATTTGCGATGCTTGTTCTTTTTAGTTCATCCACTTTCCGTGGGTAAATCGAAGCTTTATCCATCGAAATTGAGCCTGCATCCACTTCGGTACCAATCCAATCAATATTATTAGCGTTGTGTGTGAACTGCTGTGTCACGAGGCCCTGAGCACTTACATCGCAAAGCACTATTATTCTATCAGGAAGCCATAATGTGAGAGTAGCGCCAACATATGAGCTCAGAGGTGCTCAGGAGACCGTGCTGATTCAGAAACCTGAACATGTCGTGTTGAGTTTGTTGAAAATGTTGCCATTTTATGCTGTAGTTTCTCTTTTTCTGGTGGTACAGAGCATTGCACGGTTTTGACAAGATTTTGTTACAGCCatttgatatttgttttattttgaaagtttcAAGATTCGCATATGCTGAGCACCCACTAAAACCAGCCATGCCATACCAAAATGGACTTCCTTACTAACTTAGCAGCAGATCTCTGATATTAGCATCAGTATTAGCATTTTCCTGTGTGAGAGGAGGCCTCTTTTCAATCATAGATCACACGTGTGTCGTCTTCAACAGGATACGAAGCATTGGTTTACTTTACAAAAGTTGGTTAGTCTGGTTAGGTGTTGTTTACGTTGATTTAAAGCATCATCAAAAACGCCATGACTGTGTTCTGTCAGCTCATCGTTCAGAATCAAGACGTAAGCTTAGTTTAGTAACTACCTATGCAACACCTAAGCAAGACCTTagcagctcacacacacacacacacacacacacacatgccatgTGCTCAGGCCAGCCGGCTGTGTCTGTTTACCGGTGCTGTGTGTCCAGGGAGGGAAAACGACACAGATGCAGCTCCATCACCACAAGAGCCAGCATTATCTGCTGACCACGTAGTTTTACTTCACACGTTAGCAGCTGGCCCGAGTAGCTTGAAGGTGCGACAGACGTGTGCAGCTGCAGTAGCCATGTCGCTTTCCTTAGCGGTGCACTGAACTCCCTCTCTCTTCTCGATTAACACGTCAGGCCAGTTTTATGTTATTTGCAATGTCTTTTCTGCGCGCTCCGCCGTGCAGGAAGACACTCATGCACTTTTTCGAGTTAACATATACTGTACGTTTATATGTAAGCGTACACTCATCTCAGAGGGTTTGTAAGACATCTGATTTGTTTAATGTGTGGTACTCAGTTCCAGATTGCATTTGCTGACTGGTTAAGATGACGTGTACCTCTCTGGTCGTTCATAAATCCGATTGGATGGTGTTTTGGAGCAATAATGATGGAGGGCCACTTTGTTTTGTCATTGTCGTCATTAGGAATTGGGGGACATGTTCATCTCATCCCTAATAAGAAATCCAGTGTGCCTGAAACTGTTCCCTGAATGTGTACGCAAACCGGCCACATCAATTTGAAGACGCTCTCTCTGCGAATGCTTCCCGTGAGAGTCTGTCTTGGCGCGAATGAGACCGCAACCCCTCCAGATGGCTGACAGCTCAACATACCTTTACTTGAAACccaaatacaaaacatatcAGAGAGGAGCAGAACAAAGCCAGAATCAGTCTTCACGCTTTCTCAACTTCCTGTTTGCATCCCCCTTATTCCCCCTCTCATCTGTTCCCTCTCCTTCTCTATTTTTGAGGAAGAAGCTTTTTTGCATCCCTTGTTCTTGTGTTTTTCTATCATATTGTTTGAAGTTGACTTATATTGCATGCGTGGAATACAATGAGGACATAACTTGTGAATAATTTGTGAATGGCCAGAATGAGGTAACCATCTCTTTCACCTGGGCTCTCTACTCTGCGACTTCTCTTTCCGAGATGATTAGAGAGGAAGAACGAGCGTATGTTGTTTCTGGTTTCCCTCACATCAAAATGTAGCCATGCCAAATATAAGTTATGGCTATACACTAGCCATTTCGAAAGACTCTGTGTTTCATTTACctatatttgtatattgtttttaagatgatatttatctgtatatatttatctgtaGTAAATATTCATCAGAGCTTCCACAGACTCAGAGCTGAACAGATGCAGCAGATGTcgacaaaaaacaaagaaaaaaaaaaaaacggcctGCAGGAACTCGGTTTTCGCTGCATGTGTCTGTGCATTTATTCTAGTATAGTTTGACCCAATATGCACTACCTGTCCTTTTCTACTTTAGTTACTTAATGTAGCTTGTTGGAAGGGGGAATTCATTGCACTATCACAGCTAATGgagctgctgtgtctgctgCTGAGCGCAAGTCTAACCATTCACCCCCCTGAATTAAGAAACagggacagagagaaagagagagagagagttagaaAGAGAGGCCAGTGAGAAAGAGAAGGTTCCTAAAAGAAATGGATGAGTTCTATGCTACTAAGATTGATGCTGGATACAATTTTATtgtcatacaaaaaaaagggaaaaaaatatcaagaactgtataaaatatatttcaatggaatgtttattatttaccttttatatttttgaaatgtataaagaaaaagattattaaactgtaataatttaaCAGAGTTTGTGAACACTGAgacttaaaaatgttatattactAAAAGTATGGAAGTTTGACCGTGAATGCTAACCTACCTGATCAAATCTTCTCCATTACAgataggaaaaaaataagaaaaataattagaaaaatgaaatccaatttaaaaagaaaaagttatcaaaaagtcaataaaaatgttaaaagctcATGCCAAAATTTTCAA

Function

GO: NA

KEGG:

id description
K04889 KCNC3, KV3.3; potassium voltage-gated channel Shaw-related subfamily C member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28582 lncRNA upstream 53622 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 54429 11715731 ~ 11718772 (+) True G19184
TU28491 lncRNA upstream 331863 11440506 ~ 11441338 (+) True G19126
TU28487 lncRNA upstream 336004 11436944 ~ 11437197 (+) True G19123
TU28233 lncRNA upstream 392411 11380273 ~ 11380790 (+) True G18946
XR_006249757.1 lncRNA downstream 848 11834772 ~ 11835253 (+) True LOC122338225
TU28625 lncRNA downstream 57979 11891903 ~ 11893656 (+) False syt5a
TU28622 lncRNA downstream 133724 11967648 ~ 11974006 (+) True G19208
TU28679 lncRNA downstream 208960 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 238795 12072719 ~ 12073073 (+) True G19255
XM_043235630.1 mRNA upstream 697 11767888 ~ 11772504 (+) True zgc:193811
XM_043235631.1 mRNA upstream 697 11768083 ~ 11772504 (+) False zgc:193811
XM_043235632.1 mRNA upstream 5700 11762672 ~ 11767501 (+) True lin7b
XM_043235629.1 mRNA upstream 10667 11754248 ~ 11762534 (+) True snrnp70
XM_043235535.1 mRNA upstream 23273 11740279 ~ 11749928 (+) True strada
XM_043231809.1 mRNA downstream 10242 11844166 ~ 11852179 (+) True aldh16a1
XM_043231814.1 mRNA downstream 19838 11853762 ~ 11855061 (+) True LOC122333949
XM_043233690.1 mRNA downstream 23847 11857771 ~ 11876558 (+) True LOC122336178
XM_043233689.1 mRNA downstream 23864 11857788 ~ 11880887 (+) True LOC122336152
XM_043233682.1 mRNA downstream 23907 11857831 ~ 11859206 (+) True LOC122336061
TU28236 other upstream 403449 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 437376 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 610758 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 991348 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 991348 10778806 ~ 10781853 (+) False kcna7
TU28690 other downstream 258679 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 469440 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 678002 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 678002 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 685913 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile