RNA id: XM_043233835.1


Basic Information

Item Value
RNA id XM_043233835.1
length 9322
RNA type mRNA
GC content 0.48
exon number 35
gene id cacna1ha
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15368800 ~ 15455523 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCTAGAAGTTTGGCGTGTCACATCAAGGGAGAATCCCGACCAACATAGATGCGCCAAACCCTTTCGCAGTTCTTTCTTTGGATAATGGCTTTTCTCGCTTCCCATCTGAGGCACTCTGGCATGTTTTGGGATAAATCTCTCAAGATCTGCTCGTTTTAAAGAGAATCGAAGGACTTACTCGTCGTTAAGAGGCAGAAACTGCATTTGAAAGAGACaaatggatcgcagcgagtcTCAGTCTCTTACCAGAACGGATTTTTCTGCGGAACACTGAAAGTAAAGGAGATGCTTATGGGAACCTCCGATTCCTTATCTACAAGGATACCATTGTCAGACGCTTTATCATGACTGATGGCGAGGGGAGAGAACACTTTCATTACTTGGAGAGAGGAGAGGTAAGAGTTCCCATTTCAGCCCTGTACCGGGCGCCGGGTCCCAGTGAGGAGATCGGCGATGACGAGGAAAAGAGCAGCACATGGATCCCCGTCCATGAGAGCTCTCAGGCACAGGGGTCCGGGGCCCGGGACCCCACTCCGGATTTGGTCTCGGATGAGGAGGAGCAGCCCCCCTACCCGGCGCTTGCGCCCGTGGTGTTCTTCTGCATCAAACAGACCACTCGTCCACGGAGCTGGTGTCTCAGGATTGTTTGCAACCCATGGTTTGAGCATGTGAGCATGCTGGTGATTCTGCTGAACTGTGTGACTCTGGGCATGTTCCAGCCATGTGAGGACCTCGAGTGCCAGTCTGAATGGTGTGTCGTCCTACAGGTGTTTGATGACTGCATCTTCGCCTTCTTTGCTGTGGAGATGGTCATCAAAATGATAGCCCTGGGGATTTTTGGATCAAAGTGTTACCTTGGTGACACATGGAACCGTCTGGACTTCTTCATCGTCATGGCAGGGATGATGGAGTATTCACTGGATGGTCATAACGCCAGCCTGTCAGCCATCCGGACTGTGCGAGTGCTCAGGCCCCTGAGAGCCATCAACAGAGTGCCTAGTATGAGGATACTGGTGACTCTGCTTCTTGATACTCTGCCTATGTTAGGCAACGTCCTCCTGCTGtgcttttttgtcttctttatATTCGGCATTGTCGGGGTGCAGCTGTGGGCTGGACTTCTTAGAAATCGGTGTTTCATACCAGATAACGTGAAAGCCCTTTATAATCTGTCACACATGACTCCATACTACATGAATGAAGAAGGTGAGGACAACCCGTTCATCTGCTCCTCCAATAAGGAGAATGGCATGCTGCGCTGTAATGAGGTGCCCCTTCTCAAGGAGGGTGCTGTTGAGTGCACTTTAAATGCATCCTCACTGGGACATGGCCTGGATGGGACAGGCAACAGCAACAGCTGTGTTGACTGGAACCAGTATTACAGTGAGTGTAAGCCCGGGGAGTTCAACCCGCACAAAGGGGCAGTGAACTTCGATAATATTGGATATGCCTGGATTGCGATATTCCAAGTTATTACTTTGGAAGGATGGGTGGACATCATGTATTACGTTATGGATGCCCACTccttttacaattttatatattttatattgcttaTTATAGTGGGTTCCTTCTTCATGATCAACCTGTGCCTGGTTGTAATAGCAACCCAGTTCTCAGAAACAAAGCAGCGCGAGAACCAGCTGATGCAGGAGCAGCGAGCACGCTACCTCTCCAACGACAGCACCCTCGCCAGCTACTCTGAGCCAGGGAGCTGCTACGAGGAGATGCTCAGGTACATCAGCCACCTGTACCGCAAGGTGAAGCGGCGTGCTTCCCGCGTCTACAGCGGCTGGCAGAGCAAGCGCAGAAAGAAGGTGAACCCCAACAGCGGGCTGAGTGGGGCAGGAGGAGCaggaggcggaggcggagggGCCAATGGCCACAGCAGGCACAGGGGTCGAGGACACTGGGTTCGCTCCATCCACAACCTCATCCAACAGCACCAACGACAGCACTGTCACCTCAGCAACGGCAGCCCTAGTCCTGTAACCACTTCGGGGCCCGCAGAGGCTCTGGAAATGAGGTCCATCACTACGGGGCCGCAACTGACCGTGTCCTCACAGCCAACCGCCATGCACAATCTCTCTTCCAGGACTCAGTCAGTGCACAGCATTTATCAAGGTGACTTTCAGGAGGCCCCGCAAGGGCGAGCGAGCACCGCTGTGGGTGTGGCAGCGCTCGGGCGACTAAACGGCGGGATGAATTATCCCACCATCTTGCCCTCCCTCATTTGCAGCTATACTGGCGGCAGTTCTGCAGGGAAAGGAAGGAGGGAGTCGGATGCAAATACGGGATGTGATGCGATTGATCCCTTTGAGAAGCTGCACCAGCTCATGGGAGAACATAGCCACAGTCAGGTGCTGCTGCAGATGGCTGGTGTGGTGCCCAGTCCATTGCTTCTCGAGCTCCTGAGCTGCCCGTATTGTGCAAGGGCCCTGGAGACCATGGACGTGGAGCTCGGAGATTCAGACTACTCCAGATCAGATGGGGATGTGGTTTACGAGTTCTCCCATGGAGCGGAGTTCAAACCCTGCCGTGCGTCCCATCATAAAATCCTGGAGGAGCGTAACCGGCTGGCTCAGTACTGGGATGACTTCCGGGACAGATTGATACGCATAGTGGATAGCAAATACTTCAATCGAGGAATTATGATTGCCATCCTCATCAACACCTTGAGTATGGGGATTGAATACCATGAGCAGCCTGAGGAGCTGACAAACATTCTGGAGATTAGCAACATCGTCTTCACTAGCATGTTTGTCCTCGAAATGCTCTTCAAACTGCTGGCCTTTGGCATCTTTGGCTATATCAAGAACCCCTACAACATCTTTGATGGGATTATTGTAGTCATAAGTGTGTGGGAGATCATAGGACAGGCGGATGGGGGTCTTTCAGTGCTGAGGACGTTTCGTCTCCTGCGTGTGCTCAAACTGGTGCGCTTCCTCCCTGCTCTGCGCAGACAGCTGGTGGTCCTGATGAAGACCATGGACAATGTGGCTACATTCTGCATGCTGCTCATGCTTTTCATCTTTACATTTAGCATTCTTGGAATGCATCTTTTTGGATGCAAATTCAGCATGAAAATGGAGAATGGAGACACTATTCCGGACAGGAAAAACTTTGATTCCCTGCTGTGGGCCATTGTCACTGTGTTTCAGATCCTGACCCAGGAAGACTGGAACGTGGTCCTCTATAATGGAATGGCTTCCACCACCCCATGGGCGGCTCTTTACTTTGTGGCTCTGATGACTTTTGGGAATTATGTGCTCTTTAACCTACTGGTGGCCATCTTAGTGGAGGGATTTCAGGCAGAGGGGGACGCTAACAAGTCAGATGTGGATGAGGAAAAGCGCTCGGAGAACTttgaagaggaagagaagatgGGGGAACTACGAGCTACAGAGCTGAAGATGTACTCTCTGATGATGTCAGCGAATGGGCATGTGGATCCTCGAGGCACTTTACCCCCTCCTATCATCATGCGCACGGCTGCCACCCCCATGCCCACTCCCAAGAGCTCACTCGGCCCCGAGTCAGTGTTTGGTTTAAACGAGTCCAGGCGGGGCAGTGGCATCTCAATAGATCCAAGTGCTTTTGATCAAAAATCCCTGTCTAGCCCAAGAAGGTCTCCATGCCACCCCCGTGGCTCAGGCAGTAACTGGGGCAGCCGCAGGTCAAGCTGGAACAGCTTAGGACGGGCGCCGAGTTTGAAAAGGAAAGACACGTCTGGGGAGAGAGAGTCTCTGCTGTCTGGAGATGGCCGGGGCAGCTTTGAGGACGAAGACTTAGAGGGGGAGAAGCTGGCCAATATCAGTGGAGGCTCACTGCAGCATCCCAGCTCTCTAGATATCCCTGAGCTGCACCAAACCCCCAGCTTCAGCTCACTGGGAGACTACCACGACTGCAATGGAAGAAGCCTGCACCTGCCCAGCGACCTGTCCGCCAACCTCAACAAAGAAGACTCCATCGCAGAGGAGGACATGGATGACAGCTTCTGTTTCCGTCTCAAGAGAACTTTTGAGGCATATAAACCTAAGTGGTGTAAAGACCATGAAGAGTGGTCCCTTTACCTGTTCTCTCCTCAGAACAAGTTTCGGGTGATGTGTCAAAGGTTAATTTCTCACAAGCTGTTTGATCATGTAGTCTTGGTATTCATCTTCCTAAACTGCATTACCATTGCTCTGGAAAGACCCTCTCTTCCGCAATCCgaGCGAAAGTTTCTCGTTATCTCCAATTATGTTTTCACTGTGATTTTTGTTGCTGAAATGACTGTGAAGGTGGTGGCCCTCGGCTTCTGCGCCGGGAAGCAAAGTTATCTGCAGAGCACCTGGAATGTTCTGGATGGGGTGCtggtctctgtctctctcattgACATTCTGTTCTCCCTGGCCTACTCTGGTGGAAACCGAATCCTTGGCATCCTGAGGGTTCTTCGTCTGCTGAGAACTCTGCGGCCACTGAGAGTGATTAGTCGTGCTCCTGGACTGAAGCTGGTGGTGGAAACTCTAATAACGTCCCTGAGGCCCATTGGGAACATTGTGCTGATCTGCTGTGCCTTCTTTATTGTCTTTGGCATTCTTGGAGTTCAGCTCTTCAAAGGAAAGTTTTACCATTGTGAAGGTGGCGACACCAAAAACATCACCAATAAGTCTGATTGTCTTCAAGCAAACTACAAATGGATTCGGAGAAAATACAACTTTGACAACTTGGGACAgGCTCTCATGTCGCTGTTCGTACTTTCTTGTAAGGACGGCTGGGTCAATATAATGTATGACGGGTTGGACGCTGTTGGGGTGGACATGCAGCCTGAGCGCAATCACAACCCCTGGATGCTCCTCTACTTCATCTCTTTCCTGCTGATCGTCAGCTTCTTTGTGTTGAACATGTTTGTGGGAGTGGTGGTGGAGAACTTCCACAAGTGTCGCCAGgaccaggaggaagaggaggcaCGTCTGCGTGAGGAGAAGAGGCAGAGACTGCTGGAGAAAAAGCGCAGGAGTAAGGCGAATTGCGGGTCTGAGGCCCAGCAGAGACCATACTATGCAGATTACTCTCCGGCCCGGCTCTACATCCACACACTGTGTACCAACCACTACCTGGACCTCTTCATCACCTGCATCATCGGCATCAATGTGGTCACTATGTCTATTGAGCATTTCAACCAGCCTCGCTACCTTGAAGATGCACTGAAATACTGTAACTATGTCTTTACCGTCGTCTTCATAATTGAGGCTTTGCTCAAGCTTGTGGCATTTGGTTTTCGGAGATTCTTCAAAGACAGATGGAACCAGCTGGATCTAGCCATAGTCCTGCTTTCTATCATGGGCATAACCCTGGAGGAGATTGAGATGAACGCAGCACTGCCAATCAACCCCACCATCATTCGCATTATGAGAGTGCTGAGGATAGCCAGAgTACTGAAGCTTTTGAAGATGGCTACAGGCATGAGAGCACTGCTAGACACTGTTATGCAAGCTTTACCACAGGTGGGAAATCTGGGCTTGCTGTTTATGCTCCTCTTCTTCATTTATGCGGCACTTGGCGTGGAGCTTTTTGGGAAACTAGATTGCAAAAACTACCCATGCGAAGGATTAAGCAGACATGCTACATTTGAAAATTTCGGTATGGCCTTTTTAACATTATTCAGAGTATCGACGGGGGACAACTGGAATGGCATAATGAAGGACACTCTGAGAGAGTGCCTTCCAAATGAACCTAGCTGCTTCAGCTATCTGCCCCTGGTTTCCCCCATCTACTTCGTCACCTTTGTGCTAATGGCTCAGTTTGTGCTGGTTAACGTGGTGGTGGCCGTACTGATGAAACACCTGGAGGAGAGCAATAAGGAGGCTAAAGAAGATGCAGAAATGGACGCTGAGATTGAGATGGAGATGGAAATGGCTCGCCGTCTCAGCAATGTCTCAGCAGGGAGCTCTACAGGGCTGGAAGGAAGAGCAACTTATATAGGACCACACCCGGATTCACCTGAACAGGATGAAGGGATGCAAAGAACACAGGAGAATTTGCTCTCTCCACGGAAAATGTCAGTGTCAAGGATGCACTCTTTGCCCAATGACAGCTACATGTTTCGCCCTGTGAGGCCAGCCAGTGCTCCTTTTCCACTAGAAGAAGTGGAAGCCATTCAAGGGTACCTTGAATTAGGCTCTATCACCTCAGTCCACTCTCAGCCATGCGAAAGCCATTCCCTGCTCCAGGTCCCCGGTGTTCCTCCCCATTCCCAGTTCAACTACCTCCCCAAGATCCCCCCTCCCATGCCCTCTCCAACCCACAGCATAGGCAGGACTTTACGCAGACAGgaggcttttaaaaatgactccgTCGATGTGCAGAGTTTTGACTCCAAAGACAATCCCGACAGACAGGAAGGAATATCTACAGGCAGCTTCAAGCTGCGTGTCCCTCGAATCACAGGACCCAGCATCCCTCAGGGGTCACCCTTGCTGCCCCCACGTGGACATGCCCCCAGTGTCTGCACCTTCCAGCAGCCCCACAGCCAGCACAATATCCCTTCTCGATCTCCCAGCCTggccagcagcagcaggagcaCCAGCCCCAGTGGCTCCATGTTCGACTCTGCCGACCCGACTGACGATGAGGTCCGCCACATCAACACTACAGCACGACTGTGGGTAGGGATTCAGGCTGAAGCCCGGAGTCACTCCCTGTCTCCTTACAGCACCTCAGGGATGCTGCTTCCCATCCCCGTGAAGAACTGCAGCAGTGCTGCCAACTTAAGCATCAAAGATCCGAAGAAGTGCTTCAGTGTGGACACAGAGGGTTTTCTGGAAAAACCCTATGGTGCCGATGACCATCGCAGGCACTCAATTGAGATTTGCTCGTCAGTAGATGAAGGGCTGTTTGGCCAAGAACTCAGTGAGAAGAGGCACGTTCCCATGCGTGGACAGTCATTACACATTCCCCGGAAGAAAAAGATGAGTCCTCCCTGTATCTCCATCGAGCCCCCGTTTGAAACGATGGCTCCCGCTTCTCTCTCATCCATGAAAAAGTTGTCGGAGAGCAGCATGCTACTACGGAGGAGGACGCCATCCTATGACCTGGCCCTGCAGCGGGACTCTCTGGATTTGCCGGAGAACCAGCTGTCCACCCAGCCGCTTATCAAAGTAGAGCGGCACCCCTCTCACTGTGCCGAGTATCTGTCCCTGCCTCATCCCAACCCAATGGGTGGACTAGCAGGCACACAGCCGCCCCCCTTCGACAGCCGGTTTGAAGAATCCACGGACTTCAGCTCTGTAAACAGGACAGCCCAATGAGGGACATTGGCTTTAGCCAAATTTTACCATCCACACTCAAGGGTGTGGCAACTAGCTGAATGGGGGATGTTGACCTCTTTCTGTAGCCaaagttttctgtttatttttcagatgtAATATCATCATGAAAGCCAGCCAGGAATGGCAACCGATCCTAGCGGGGAACAGTGTTTGATCTGACTGTGTTGAACATGGGATATGCAATTTCAGGTTTCCAAATGGAATTCTGGTTCTTATTTTAATCCCAGTGCTCAATCACATTGATTTGAGTTCAGGATGTGTAGTGTTATGTATCATCTGTATCATATCTGTCAGTCTCTCCTCTCTTTGTCATGAGCATTGGTAATGTTTTCTGTAGAGACAGAGTATACagattaaaagactaataactaaGAACTGTAcatgttatgtattttattgaCTCATAATGTGTAAATAGAGAACATATTGTATTAGTGGAGAAACAAGCTCTATtcatatgcacatattttttataGAGATCTATAATGTTTTTGCACATATCAATTTAAATTGTCCTCTGTTGTCTTCTtgtgaatgtacatttttttaatcgaaTAGCTGTGGGATCAATTCTAGTCTGTTTAGGCCTACTGATATTgagatgatttttatttttctattggGAGGACGGGGTGTGTCGTATAATATAGATCCAATGAGAACCAAACTACAAATGATCTGTAGCCTGAGTGCAATACACTATAAATGTTTCTGTAAGTTTACCCAGTTAGGTTACTCACTTTTTAAGCAAACATAGCCAGTAACGTGCAtctcacatacagtatacaacCCTTTACCATACTCAGGTTCATCTCAAAATGTATATTACGATTTCTGCTACACTTTGCATTGTAACCTAATTTAACCACAACATAacctattttaacattttgtggcCCTTGGCTGTGGCACAAGTTGCATGTGAAGGACAGAGTTATTCAAATGTAAACGTGACCTTGTTCTGTTTCTCCTGATGATCGAACTTTATAACTGTCAGAGCAGAAGACTGAGGGAGTTTATATCAGCGCACGTCTGATCTATTTTTTGAACTGCCCTGCTTTGAAACGGCACCTCTGGGTTTGTGCCTGTGTGAAACAATGGGACAACTgtttaatgaaagaaatacaaaggaatgttttgattattttttattttatttttatcttatttttttttagaagtgaTCAATGTGATTTATGTATAGTTAAACTAAGCCATGGTGTTTTTGGCAAATCACAGGTAAACGACACCTGCAAATCCTGTTCTTTAAATGATATAACTCACACAACTACATATCCAGTGTCATCAATGCATCACCTGAGATTTAAAATAGTTGATGCAGCTTTTGTGCTGTGCAAATTTACTTTTCCCCTCCATTTATGATTCTCCTCAAAAGATGGAGAGGGAAAATCAGTTGCATGTTATTGAGAGATTTAGAAATACAAACATCTGgatgtttttgaagtttttgataTTTCAATTTTCAGATATTTTCCATTTGTAGACTTATTATCTAATTGCACTGAGATGTAATTACAAGGTATTCCTCTTTGTAGAAATGAGTAAACCCACTTGttgtttaatgcaatattttatgaTAGCCTATGTTGAGAAGAGTGCAAGAGGTTGTAAGCAAAAATCATGGATGATTACAAttgataaaaatatgtactCTGACAACATAATTGGACGTCAATTTAACATTGGACTTTGAGACAAATGTGTGCAGTGTTTCATGTATCTTATGGTACTAGATCCATGTTTTTTGCAAGAGGATTGttgagaggttttttttagtaCTATTGAATAAATGATAGAACTGTATGGATGGAGTAGTATATAACTGCTTAAAGTGTTTTAATCACTTTGGGCATGTGGACATTcttagctgtttttattttttttgtttgttttgtttgtttctttattttttgaatatgaGCTTTTGCCATGAAGCAGCCTAATGTCCTTAACCCTTCAATAAATAATCAAAGCATTTTCCTCAA

Function

GO: NA

KEGG:

id description
K04855 CACNA1H, CAV3.2; voltage-dependent calcium channel T type alpha-1H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30245 lncRNA upstream 92179 15276294 ~ 15276692 (+) False zgc:165423
TU30185 lncRNA upstream 229971 15129681 ~ 15138900 (+) True G20269
TU30054 lncRNA upstream 375834 14990229 ~ 14993037 (+) True G20188
TU30039 lncRNA upstream 378879 14972299 ~ 14989992 (+) True G20179
TU30048 lncRNA upstream 397210 14971012 ~ 14971661 (+) True G20183
TU30422 lncRNA downstream 131689 15587212 ~ 15588809 (+) True G20415
TU30435 lncRNA downstream 251413 15706936 ~ 15744171 (+) False fscn1a
XR_006248753.1 lncRNA downstream 259209 15714732 ~ 15725356 (+) True LOC122334397
TU30436 lncRNA downstream 260674 15716197 ~ 15727870 (+) False LOC122334397
XR_006248755.1 lncRNA downstream 264724 15720247 ~ 15721303 (+) True LOC122334400
XM_043233739.1 mRNA upstream 30110 15319882 ~ 15338761 (+) True epn2
XM_043233740.1 mRNA upstream 30110 15319882 ~ 15338761 (+) False epn2
XM_043235768.1 mRNA upstream 67904 15293378 ~ 15300967 (+) False prpsap2
XM_043235767.1 mRNA upstream 67904 15293386 ~ 15300967 (+) True prpsap2
XM_043225448.1 mRNA upstream 75962 15287608 ~ 15292909 (+) True cln3
XM_043233984.1 mRNA downstream 1604 15457127 ~ 15461711 (+) False ccdc97
XM_043233983.1 mRNA downstream 1604 15457127 ~ 15461079 (+) True ccdc97
XM_043232178.1 mRNA downstream 83382 15538905 ~ 15541934 (+) True gfer
XM_043232166.1 mRNA downstream 86599 15542122 ~ 15547875 (+) True syngr3a
XM_043233700.1 mRNA downstream 123077 15578600 ~ 15583401 (+) True smcr8a
TU30209 other upstream 183998 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 199613 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 698191 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 702342 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 702949 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 724387 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 1235180 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 1235180 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 1242476 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1550391 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile