RNA id: XM_043233844.1


Basic Information

Item Value
RNA id XM_043233844.1
length 1576
RNA type mRNA
GC content 0.44
exon number 4
gene id angptl8
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9860463 ~ 9863218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGTGATATAAACAGACAAGAAAAGCACTGCAAATGACTTGACTTTGCCCCAAATCAAACACTGAACGAGTGGCAGGAGCATGAACCTACAGGGCTCTGTCTCCCAGATTATCGGACGCTAAAAACAGCTTACAatctcttatttatatatttttaaaatagcacaGAAGGTGCTCCGAGTGCCTCTGGGGTTAAAGGAGAACAGGCAGACTGCTAAGCACGTCCCTGGTTCAATACCACTAAACATCTGTCTGACCGACACAAGTCAaggtctctctctcacacagctATAAGCGTAGCTCTGATAGGCTCACGTCCGATTTCCCAAAGTCCAACGCACACCGTCACTGCTTATAAAAGCAGTGCTGCAAAGTTTGCACATTCAAACAGCTTTTCTCCTTGCGCCTGCGGCAGAAGAGGCGAGGATGCAGGCAGCTCTATGCGTGCTGTGGATGGCTCTGTGCGCGTGCGGGGTCTCCTCATCGCCGCTGAGGTCCGTCCAGGCTGGGGAAAACGTGAACATGGCCTCCGCGGATGACGTGAACATCCTGATGTACGGCGTGCTGCAGTTCACCGAATCCCTGCACCACATGTACCAGAGCACGGAGGCCAGGCTGGCCCGACTCATGAAAGCCGTCAGCCGGACTGAGAGTGAGGTCAAAAGATTGGGCCACGACACGGAGGAGGCTGCTCAAAACGAGCGACAGATTAAAGAGAAACTCCAGCTCCTTCAGGCTCAGATGAAAGCGCTGGAGATTCAGGTCCATGAGAACAGAGATACAGTCACCAGGGTGGAGCTGGAAGAGGCGCAGCTAAAGAAAAAACTATCCAGCCTGGAGGAAAACCTAAACAGCTCTGTCCCAGACAAGATCAAGGGCGCACCGCTTAAAAACAACTCTAACCTGAAGGACCTGATGAAGTGGACACAAGAACAGAAACTGAAATTGGAGAATCAAAACCGACAGCTGGCTGATTTACAGAAACGGAATATGGTGTAACCactaaaaatcacatttgagGAGGAAGCGCAATCATCTGTCATCATCAACACTCCATTCACGGCTCTGCAAATGGATCTCATGTACTACATGTGATAAGACAAACATGTCCACTTTTCTAGTCATTTAATACACACATCGGGCCTCATTCTTGAAGCCTTAACGAGTGtgaatttttgtaaaacatcTGAAACTGTGAAATGCTGCATGAAATTCCCGTGTAACAACTATTTAGCTGCTTTTTTGTAGTAAATAACGTTTAGAACAGCACAAAAcacaatcataataatatacatgtaACTTATAACTTAGTACTTTGTAActtataactgaaataaaataaaaggtatgtgtcttctctttctgtttgaaacaataataatatggcacaaattaaaattatttactttcTACATAAATGTTTCTAGTCTTTCAATGTATGATTAATCAGTATGCACatagtttcaaataaatacccACATAGTTTATACTTTCGTAACTTCATAACAACTTCTCCACAGATGAAACAGACAAatgcaaatgtcttttttaaaccTATTGGCCCCAAACTTTAAAC

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043627 response to estrogen biological_process
GO:0006412 translation biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006518 peptide metabolic process biological_process
GO:0016900 oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor molecular_function
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG:

id description
ko03010 Ribosome
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27627 lncRNA upstream 1365 9854603 ~ 9859173 (+) True G18507
TU27622 lncRNA upstream 76080 9775320 ~ 9784458 (+) True G18502
TU27582 lncRNA upstream 257474 9602642 ~ 9603064 (+) True G18470
TU27568 lncRNA upstream 284636 9575241 ~ 9575902 (+) False G18458
TU27567 lncRNA upstream 284844 9575241 ~ 9575694 (+) False G18458
TU27641 lncRNA downstream 2568 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA downstream 47739 9910957 ~ 9911612 (+) True G18549
TU27728 lncRNA downstream 170923 10034141 ~ 10103461 (+) False G18574
TU27867 lncRNA downstream 410756 10273974 ~ 10302050 (+) True G18671
TU27964 lncRNA downstream 708601 10571819 ~ 10579144 (+) True G18744
XM_043230173.1 mRNA upstream 56152 9803573 ~ 9804386 (+) True LOC122332778
XM_043229722.1 mRNA upstream 60742 9799062 ~ 9799796 (+) False hbbe1.3
XM_043228772.1 mRNA upstream 64006 9795789 ~ 9796532 (+) True LOC122331228
XM_043228471.1 mRNA upstream 67149 9792656 ~ 9793389 (+) True hbbe1.2
XM_043229144.1 mRNA upstream 70374 9789355 ~ 9790164 (+) True hbbe1.1
XM_043234889.1 mRNA downstream 29315 9892533 ~ 9908575 (+) True elavl3
XM_043234891.1 mRNA downstream 29316 9892534 ~ 9908575 (+) False elavl3
XM_043234893.1 mRNA downstream 29316 9892534 ~ 9908575 (+) False elavl3
XM_043234890.1 mRNA downstream 29316 9892534 ~ 9908575 (+) False elavl3
XM_043234892.1 mRNA downstream 29317 9892535 ~ 9908575 (+) False elavl3
TU27625 other upstream 60783 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 110658 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 163979 9694632 ~ 9696559 (+) False aanat2
TU27323 other upstream 674878 9184528 ~ 9185660 (+) False LOC122341719
TU27725 other downstream 162600 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 889541 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 915588 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 1299136 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 1470541 11333759 ~ 11335825 (+) True LOC122331261

Expression Profile