RNA id: XM_043233857.1


Basic Information

Item Value
RNA id XM_043233857.1
length 3366
RNA type mRNA
GC content 0.47
exon number 19
gene id grna
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10805061 ~ 10817240 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGAGCTTGACAGAACTCATTTAATGGGCAAACGTTTATTAATTCAAGCACAGTGTGGAAACGTTGCGAGGGGACAAGATCGGTAACTTGGAACTCACGGATCCACGGACTGGTCATTCACCTTCAGCCGTTTACAAATCCACCTGttcattcaattaaatATGTTGAAAGTGACATTAGGCCTCGCTCTGGTGACTCTGGTTGCTTGCTCGCAGTGCCCCAACAATGAAGTGTGTGAGGCAGGCCAGACATGCTGCCAGGATCCCACCGGAGAATTCAGCtgctgccctttccataacggagaGTGCTGTGAGGACCACCTGCACTGCTGTCCTGAATACATGCTGTGCAGTGTTACAGACTCCATATGTGAAAACGCTACACTTGCAATGCCGTTTGTGAAGAGGATACCAGCTAAACAGACAGACCATCCCAAATCGTTCAGAATGATTCCCTCATTACCGGCGAGTGAGAATGATATCACCTGTCCTGATGGCTCCTTCTGTCCTGCTGAGTTCTCCTGTCTGCTGATGGCTTCATCATATGGGTGCTGTCCTGTAGCACAGGGTCTTGTGTGCTCAGATGGGAAACACTGCTGCCCAAAAGACCATGAATGCAGTGCAGACAGCAAGTCCTGTGTCAAACTAAAAGAACCAGTCAAGACTGTTCTTTGTGGAAATGGGATCTCAGAGTGTCCCGTGGACACCACATGTTGTGAGGCAGAAGATGGTCAGTGGGCATGCTGTCCAGTGCCAAAGGCTGTATGTTGTGATGATAAAATCCACTGTTGTCCAGAGGACAGTGTCTGTGATGTTGAAGCCTCCAAGTGCATGTCCTCCACCAATCAGGAGCTGCCTATGTGGGACAAGTTCCCTGCTCGTCTTAGAGCTGAATGGGAAGATCACAAACCTGCAGAAATGAGAGCTGAAGCTGAACTCACTACAACCAGACAAATCACTACTGCTGGCAACCAAATGACTAGCCTGCCTGGTGTACTACCAAAGACCTCTGACGTTCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAGGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACTCTTCAGGATCTCAGCTCTGGTTCGAGAAGCTGCCTGTCAAAACAATCAGCAGTCAGGATGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGGTGTGCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAGGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGCTGTGACGACTTCATCCACTGCTGTCCTCATGGTCAGAAATGTAACACTGCTGCTGGGACGTGTGAGGACCCTTCATGTTCTGGTGTGCCCTGGGTGGAACAGGTGCCCGTGCAGCCAATCATCAGTCAAGACAAACAAACCTCTGACGTTCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCCGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACTCTTCAGGATCTCAGCTCTGGTTCAAGAAGCTGCCTGCTTTCACTAGAGCAGATCAGAGGTCACCTGCAAAAGTGAATTGTGACTCTAGTCACATTTGTCCTGATTCTAGCACTTGCTGTAAAAACATTGATGGAGAATGGGGCTGCTGTCCTTTGCCTGAGGCTGTGTGTTGTAAGGATAAATTCCACTGCTGTCCACATGACACAACTTGCGACTTTGTAACACTCAGCTGCACTAGCAACACCACATCTGTGCCTATGTCCGTAATTAAACAACCTTCAGCTAAGGAGGAACAGAGACAGCACGGGGAAGTGAAAGACAGAGTGGGGAAGTACAATAGCAGGATTCCGTGTGATTCTCAAACTTCCTGTCCAGATTATACTACTTGCTGTTTTATTGCAAAATCCAACAAATGGGGCTGTTGCCCACTGCCTAATgctgTATGTTGCAAAGATGGGGAACACTGTTGTCCGACTAACTATAAGTGTGATGTGATCAAGGTGTCTTGCATCAAGGGAGATGTAGTTATCCCCTGGTACAATAAACTTTCCGCTCAGAGCACGCCGACTCCGAGCTTGGATCTCGGCACTGTAGAGTGCGATGAGCAGTCGAGTTGCTCTGCAGATTCGACCTGCTGCTATCTGTCCACTGGAGAATGGGGCTGCTGCCCTTTTCCTGAGGCTGTTTGCTGCCCAGACCAGGAGCACTGCTGTCCCGGCGGCTACAGGTGTGACTTGCGTAGACGCTCCTGCATAAAAACCACCTGGCTGCATGTGGAAATAGTCCCACTTTCACACATTGATGACCAAAATCCACAGTCGACAGTCTCAAAGGACATTCAGTGTGGAGGTGGATATAGCTGCAAAGACAGTGACACCTGCTGTCCAACCTCCGAGACCACCTGGGGCTGTTGCCCGTCTCCACAGGCCGAGTGCTGTGATGATATGAAGCACTGCTGTCCTGCGGGATACAAATGTGGCGCAGGTGGAACTTGTACTTTAGCCGTAGGCTTCGACTGGAGAAACTGGGACAACTGGAGAGTGTTCTTCTCTAAAAGCAAACAAgctattaaattataaatacatcaacagtaaaaaacaaacacctgGGTTGTTCCCACTCTGTTGCTTAAATGGCCAACACTCCTTAAAGTGTTacgtttttttagatttatcaCAGTACTAATCAAAGATAATCAGACACTTTACTGAAAAAGGTTGAATTTATTTGCAGGGCTGAATATGATGGCTTATGTCTGTTGCTATTGTCTATCAGTAATACCAAAATGTTATCCACTAagaaatttgtacatttttagaattggtgttattgtaaaatgtacattGTTCGTAGTTTTGCGTAGTATCCAGTGTCTTGGTTACTGTTTGGTTTTATCTGAAGAATAATTTGACTATGGAATGATAGAAAAATGTAACACATATTGAAGCGTAGATGACCTCTAGTGGCCGGATGTAAATCACACGTATGCCATTACAACATCACAGGCCTCAAAGGTTTACAGGTTACATTTTTTCAGTCTTGTGACTATGATCTGTGATTTGTATAATtgccttttttattcatttaaacagatGTTTTCTGAAGTAAAAATATGACCAATTTGAAACCTTGCCAGCTTTAAAAGGGAAATAAAAGATAAAGGTAAATTGTA

Function

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0048675 axon extension biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28324 lncRNA downstream 35663 10767300 ~ 10769398 (-) True G19019
TU28025 lncRNA downstream 107522 10689164 ~ 10697539 (-) True G18795
XR_006248708.1 lncRNA downstream 109557 10689419 ~ 10695504 (-) True LOC122334019
TU27991 lncRNA downstream 126481 10677457 ~ 10678580 (-) True G18771
TU27965 lncRNA downstream 225921 10574167 ~ 10579140 (-) True G18745
TU28458 lncRNA upstream 516516 11333756 ~ 11335800 (-) False G19108
TU28460 lncRNA upstream 517743 11334983 ~ 11335800 (-) True G19108
TU28461 lncRNA upstream 517743 11334983 ~ 11335800 (-) False G19108
TU28475 lncRNA upstream 593095 11410335 ~ 11410716 (-) True G19117
TU28478 lncRNA upstream 594745 11411985 ~ 11414305 (-) False syt17
XM_043235858.1 mRNA downstream 1229 10798013 ~ 10803832 (-) False rundc1
XM_043235857.1 mRNA downstream 1229 10798013 ~ 10803832 (-) True rundc1
XM_043235990.1 mRNA downstream 7789 10794230 ~ 10797272 (-) True rpl27
XM_043235313.1 mRNA downstream 12269 10783232 ~ 10792792 (-) False slc25a39
XM_043235312.1 mRNA downstream 12269 10783232 ~ 10792792 (-) False slc25a39
XM_043229819.1 mRNA upstream 5208 10822448 ~ 10834477 (-) True bcat2
XM_043229813.1 mRNA upstream 5208 10822448 ~ 10830716 (-) False bcat2
XM_043229824.1 mRNA upstream 25393 10842633 ~ 10845916 (-) True fgf21
XM_043229788.1 mRNA upstream 30228 10847468 ~ 10865872 (-) False slc1a9
XM_043229784.1 mRNA upstream 30228 10847468 ~ 10861131 (-) True slc1a9
XR_006250542.1 other downstream 24865 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 25826 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 408720 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 1342156 9426572 ~ 9462905 (-) True G18433
TU27088 other downstream 2493712 8309552 ~ 8311349 (-) False fmc1
XR_006248663.1 other upstream 194696 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250462.1 other upstream 877032 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 895580 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 898482 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 898482 11715722 ~ 11727975 (-) False limd2

Expression Profile