RNA id: XM_043233874.1


Basic Information

Item Value
RNA id XM_043233874.1
length 2201
RNA type mRNA
GC content 0.40
exon number 9
gene id ppp4ca
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19376975 ~ 19380629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACAGGTGACCGGcacctttattttgaaagatGAGCCGAACAGTTGGCTTGTTGATGTGATGGTCACACCTGCGTGCGCCGCTTTCCCAACTTACCATCTACAAAAGAAACAACGGATGCTTAAACGGATTTAATCCAAAGCCCAAggCATTTTCTCATCTTGGCATCTTTTGGGATCATTTCGGCGTGCGTAATTATGTGCACAACCTCATAGTATCTTCGTTTCTCAGGAGGctgagtgtgtttgtggtcTCTGTGAGACTAACAGAGGACTGGAGAGCCAGTGAGAGTCGGGGGTTTCATCAGCCTCACATTGAGGAGTGTTTCTGAgagtgtgtatgcatgtgtgtcaTGATGGGGGACGTCATCGACTTGGACCGACAGATCGAGCAACTCCGACGCTGTGAACTTATCAAGGAAAATGAAGTCAAGGCGCTGTGTGCCAAAGCGAGGGAGATTCTGGTGGAAGAGAGTAATGTTCAGAGGGTAGATTCTCCCATCACGGTCTGTGGAGATATACATGGAcagttttatgatttaaagGAGCTATTTAGGGTGGGGGGAGAAGTTCCAGAGACAAACTACCTCTTCATGGGAGACTTTGTGGACAGAGGGTTCTATAGCGTGGAGACTTTTCTGTTGCTGCTAGCATTAAAGGTGCGATACCCTGACCGAATAACGCTGATCAGAGGGAATCACGAGTCGAGACAGATCACGCAGGTGTATGGCTTTTATGATGAGTGTCTTAGAAAATACGGCTCTGTTACAGTCTGGAGGTACTGCACAGAGATCTTTGACTACCTGTCCCTCTCTGCTATTGTCGATGGCAAGatATTTTGTGTGCACGGTGGCCTTTCTCCATCTATTCAAACTCTGGATCAGATTAGGACTATTGACCGAAAACAGGAAGTTCCTCATGATGGACCCATGTGTGACCTACTATGGTCTGACCCAGAAGACACCACAGGGTGGGGTGTGAGTCCCAGAGGAGCTGGATATTTGTTCGGTAGTGATGTGGTGGCACAGTTTAATGCTGCCAATGATATCAGCATGATCTGCAGAGCTCATCAGCTGGTGATGGAGGGCTACAAGTGGCATTTCAATGAGACGGTGTTAACGGTGTGGTCTGCTCCAAACTACTGTTATAGGTGTGGTAATGTGGCCGCCATTTTGGAGCTTGATGAGCATCTTCAGAAGGAGTTCATCATATTTGAAGCTGCACCTCAGGAAACCAGAGGAATCCCCTCCAAGAAACCTGTGGCTGACTACTTTCTTTGaccccctttttttcttttttcgtctttttttttttttttttttttttcttcagtccAGGAGAGAAATTGGAAACATCAAAAACAACCTGTATGAactgacactttttttgttttattcctttttttttttttttttttttgtgctgggAAGCTTTTATCTGCACAACATTTCAGTACTTCTGTGAATGGACCAGTTACAGCGTTTACTGCCTGTTTCTCATTAGCCTTCACATTCCTTCctcattacaaatgtatttcttacagcttgtaaaatgtatttgaacttGTTTTGACTGTCCCTAATTATGTGGtagttttgtattttcaaactGGTGATATTTTTTccaacaaaaagaataaaatgtgtgggtttatatatttgtgtatataagtCTACAAAAATGAGCATATACACAAACTTGTTAGTTTTtgatatgtattgtattttatatagctGGCGTTCCATATTTGTAATCATTTGgcactgataagaaaaaaaaatttagtcaAACCTAAAACAATTTGAGATATTGCATCAAAGGCTGTGAAGATGTAAGTAATACATCATAATGGCATCATGGACAAAATTACACACTTTTAGGCCGTTTTGATTCTGACTTGTTGCTGTTTTACAAAACAAGCACTTAATGTCCAACATATTGTGTCGGATTGCAGGCGTAAGGCAGATTATTCCTTTTGATTAGACTAGATATTTGCTATTATGTaacctttttctgtttctgGTTACCTGACAATCTTTCTAAACTTACAGTGGTCCATCTAAATGAATCGAAGATATCAGACAATGTTTCATAATgtcatttataatttagtttataaaagtgcatttaaactGTGTTTGTCCATCAAATCATACATGCTCTAAATAAATCTTTCAGGAAGTAATATTCATTTGCTACCA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0007420 brain development biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31539 lncRNA upstream 71917 19304852 ~ 19305058 (+) True G21215
TU31441 lncRNA upstream 89326 19258917 ~ 19287649 (+) True G21151
TU31498 lncRNA upstream 522432 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 547722 18828686 ~ 18829253 (+) False LOC122341799
TU31489 lncRNA upstream 673292 18702584 ~ 18703683 (+) True G21180
TU31570 lncRNA downstream 57378 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 74797 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 90370 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 102872 19483501 ~ 19484384 (+) True G21246
TU31630 lncRNA downstream 109144 19489773 ~ 19490022 (+) True G21275
XM_043235124.1 mRNA upstream 79444 19292801 ~ 19297531 (+) True c3h17orf75
XM_043235126.1 mRNA upstream 79444 19292801 ~ 19297531 (+) False c3h17orf75
XM_043235770.1 mRNA upstream 115090 19203479 ~ 19261885 (+) True xylt1
XM_043234685.1 mRNA upstream 248327 19122323 ~ 19128648 (+) True LOC122341328
XM_043225694.1 mRNA upstream 417482 18956030 ~ 18959493 (+) True LOC122329464
XM_043233870.1 mRNA downstream 4393 19385022 ~ 19393198 (+) True mapk3
XM_043235804.1 mRNA downstream 14102 19394731 ~ 19399272 (+) True gdpd3a
XM_043235805.1 mRNA downstream 18779 19399408 ~ 19403176 (+) True ypel3
XM_043235806.1 mRNA downstream 18779 19399408 ~ 19403176 (+) False ypel3
XM_043235803.1 mRNA downstream 22933 19403562 ~ 19408684 (+) True si:ch211-11k18.4
TU31536 other upstream 84634 19291445 ~ 19292341 (+) True G21213
TU31519 other upstream 383741 18991458 ~ 18993234 (+) True G21202
TU31520 other upstream 383778 18991458 ~ 18993197 (+) False G21202
TU31517 other upstream 383816 18991458 ~ 18993159 (+) False G21202
TU31405 other upstream 503918 18869266 ~ 18873057 (+) False G21125
TU31603 other downstream 19203 19399832 ~ 19403176 (+) False ypel3
TU31597 other downstream 19242 19399871 ~ 19403176 (+) False ypel3
TU31600 other downstream 19242 19399871 ~ 19403176 (+) False ypel3
TU32077 other downstream 683861 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 685501 20066130 ~ 20068001 (+) False LOC122341338

Expression Profile