RNA id: XM_043233884.1


Basic Information

Item Value
RNA id XM_043233884.1
length 6944
RNA type mRNA
GC content 0.52
exon number 48
gene id ints1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16732362 ~ 16755909 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCGCTGTCGCTCTCTCGGGATACTCGCTCACCTCGGCAGAAGTAGAGACACAGTACACGGCGAATCATGTAGCAGCGGCTTTGATAAACTGAGCTGTAGTAATTTGGAACTTGTGGAAACTGCCAAAATGAATCGGCCTAAGCCAACAAGCATAAGGCGACCTAGTAACACCAAACCGTCAGGTCACCCGCCTCCAGGAGATTTCATCGCTCTTGGAGCAAAGAGTCAGAGCAGTGAGCCGAAAGCAAACCCAGCTCTTTTGAAGCCAGCGTCCACCGGTTTGCCCCCAGACCGCAAGAGAGAGGCGACTTCTTCTCTTCCCTCCTCCTCCAGCCTGTCCAGTCTTTCCAAAAGGCCCAAGCACTCTTCTACTCCACCCAGTGCCCTCTCACGCCTCGCTGAGGTGGCTGCTGTTGACAAAAGATCAATATCCCCCTCCATCAAAGAGCCATCTGTCATTCCTATTGAAGTGTCACCTGCTGTGCTTCTGGATGAGATTGAGGCAGCGGAAGCAGAGGGTAATGATGACCGCATCGAGGGTGTGCTCTGCGGGGCTGTCAAACAACTCAAGATGAACCGAGCCAAGCCTGACATGACGCTCTACCTCAGCCTCATGTTTCTAGCCAAAATCAAGCCCAACGTCTTTGCCACAGAGGGTGTGATAGAGGCTCTCTGCAGTTTGCTCCGCCGCGATGCCTCAATCAACTTTAAGGCCAAGGGGAACAACCTGGTTTCTGTGCTGGCTTGTAACCTACTGATGGCCGCCTATGAGGAGGATGAAAACTGGCCTGAGATATTTGTCAAAGTCTACATTGAGGACTCTCTCGGTGAGCGTATCTGGGTGGACAGCTCGCACTGTAAAACCTTCGTTGATAACATCCAGACTGCCTTCACGACTAAGATGCCACCCAAGAGTATGCTGCTCCAGACGGAAACGGGACGATCAGGGGGAGACCTCAGTGCAGgGAACAGCCCTCACCCTTCCACCCCAGATGAAGATGAAGGTCAGACTGAGCTTTTAATAGCTGAGGAGAAATTGAGTCCAGAGGATGATGGACAGGTCATGCCCAGGTATGATGAGCTGGCTGAAAGTGTGGAGGAGTATGTCTTGGACGTTTTGAGGGACCAGCTGAACCGCCGCCAGCCCATGGATAACGTGTCCAGGAACCTTCTGCGCCTTCTCACGGCCACCTGTGGTTATAAAGAGGTCCGTCTGATGGCTGTGCAGAGACTCGAGATGTGGTTACAGAATCCTAAGCTGACTCGGCCAGCACAGGATCTTCTGATGTCTTTGTGCATGAACTGTAACACACACGGTTCAGATGACATGGAGGTCATCTCAAACCTAATCAAGATCCGCCTCAAACCTAAAGTTCTCCTCAACCACTACATGCTGTGTGTCAGGGAGCTTTTAAATGCTCATCGAGATAATTTGGGCACTATGGTGAAGTTTGTGATCTTTAACGAGCTGTCAAATGCCAGAAATCCCAATAATATGCAAGTGCTCCATACAGTTCTTCAACATAGCCCAGAGCAGGCACCCAAGTTTCTGGCAATGGTTTTCCAGGACTTGCTGACCAATAAGGACGACTACCTGCGGGCCTCACGTGCCTTGCTCAGGGAAATCATTAAACAGACCAAACATGAGATCAACTTCCAGTCTTTCTGTTTAGGCCTCATGCAGGAGAGGAAAGAGGCCAGTTATGTGGACATGGAGTTTAAAGAGCGTTTTGTTATCCAAGTGACAGATCTCTTGACAGTGTCCATGATGCTGGGGATCACGGCTCAGGTCAAAGAGGCTGGCATTGCCTGGGACAAAGGAGAGAAGAAGAACCTGGAGGTGCTGAGGTCCTTTCAAAACCAGATTGCTGCTATCCAGAGAGATGCTGTGTGGTGGCTGCACTCTGTGGTCCCCACCATCAGTAAAGTGGGACCTAAAGACTATGTGCACTGTCTACACAAAGTACTTTTTACAGAGCAGCCTGAGACGTATTACAAATGGGACAACTGGCCACCTGAGAGTGACAGAAAtttctttCTTCGGCTGTGCTCAGAGGTTCCTCTGCTGGAGGACACACTGATGCGCATCTTGGTGATTGGTCTGTCTCGTGATCTGCCCCTGGGCCCAGCTGACGCCATGGAGCTGGCCGATCACCTGGTGAAGAGAGCTGCTGGAGTTCAGTCTGATGACTTGGAAGTGTTGCGAGTCGAGAGGATGCAACTCATTGATGCTGTGCTAAACCTGTGCACTTACCATCACCCAGAGAACATCCAGCTGCCTGCAGGCTATCAACCTCCAAATCTGGCCATATCGACTCTTTACTGGAAGGCCTGGCTGCTGCTGCTTGTGGTTGCAGCATTCAACCCACAGAAAATTGGTTTGGCAGCATGGGACGGTTACCCCACTCTGAAAATGCTCATGGAGATGGTTATGACAAATAACTACTCCTACCCGCCGTGCACGGTGGCCGATGAGGAGACCAAGACTGAGATGATCAACCGAGAGCTGCAGATCTCTCAGAAGGAGAGGCAGGAGATCCTGGCCTTTGAGAGCCACCTGGCAGCCGCTTCTACCAAACAGACAATAACAGAGAACAACAGCCTCCTGCTGTCTCAGCTCACCAGCCTGGACCCAAAGGGCCCCCCTCGTAGGCCGCCGCCTCATGTCCTGGATCAAGTAAAGAGTCTGAACCAGTCTCTGCGCCTGGGCCATCTTCTCTGCCGCAGCCGCAACCCTGACTTCCTACTCAATATTATCCAGAGACAAGCGTCCTCTCAGTCCATGCCATGGCTGGCTGATCTTGTTCAGTCCAGTGAGGGGTCCTTGGATGTGCTGCCTGTTCAGTGCCTGTGTGAATTCCTCCTTCACGACGCAGCTGATGACTCCTCTTCTGTTGATGATGAGGAGGAAGGAGAGAGCAAAGAGCAGCGAGCAAAGAAAAGACAGAGGCAGCAGAAACAGAGGCAGCTTCTTGGACGGCTCCAGGACCTGCTTCTGGGTCCTAAGGCTGATGAACAGACCACATGTGAAGTCTTGGACTACTTCCTGCGGCGTCTCAGTTCTTCTCAGGTGGCCTCTAGAGTTCTGGCCATGAAGGGTTTGTCTCTGGTGCTGACTGAGGGAGCATTAAAAGATGGAGAGGAGAGGGATCAGCTCATGGAGGAGGACTCCAGAGATGCCGAGTTACTGCCAGGCTACCAGTGGCTTCTTCAGGACCTCCCCAAACTGCCTCTGTTTGATAGTGTAAGAGGCTTGACCTCCAGCGCCTTGCAGCAGGCCATTCACGTGGAGACTGATCCTCAGACCATCAGCGCTTACCTGATTTACCTGTCCCAGCATGCACCGGTGGAGGAGCAGTCGCTCCACAATGACCTGGCCTTGGATGTTGCTCGTCTGATAGTGGAACGCTCCACTATAATGAACTGCCTCTTTTCCAAGCACTCCTGCAGGCCTGAGTCTGATGCCGTTCTCTCCGCTCTCATCTCCATCTTTTCCTCCTATATCCGTCGAATGAGAAAGACAAAAGAGGGAGAGGACCTCTATAGCTGGTCGGAGTCTCAGGATCAAGTGTTCCTGCGGTGGACCACAGGAGAAACAGCCACTATGCACATCCTAGTGGTCCATGCTATGGTCATACTGCTCACACTGGGACCTCCTAAAGggGAAAGTGAGTTCTACTCATTGCTGGATATCTGGTTTCCTGATAAAAAGCCCCTTCCCACTGCATTCCTGGTTGACACGTCTGAGGAAGCACTTCTGTTGCCAGATTGGCTGAAGTTAAGAATGATCCGATCTGAAGTCTCCCGACTGGTCGATGCAGCTTTACAGGACCTGGAGCCCCAACAGCTGCTGTTGTTTGTCCAGTCCTTCGGGATACCCGTCTCCAGCATGAGCAAACTGCTGCAATATCTAGACCAAGCAGTGTCCCATGATCCTCAAACACTGGAGCAGAACATCATGGACAAGAACTACATGGCCCATCTAGTGGAGGTCCAGCATGAGAGAGGAGCCACCGGTGGACACACATTTCACAGTCTACTCAGTGCTTCACTTCCTCCGCGCAGAGACAGCTCAGAGGTGAGCAGGGCCAAGGTTACCGTTGAAATGCCCCATGGCTCTGTGAAGATGAGAGCAGTGAGTCAGGTGCCCGTGATCGGCCCAGAGGATGACCTCGCTGGGATTCTGCTACAGCTCTTCCCTTTGAAAGTGGATCCTCGTTGGCCTGCGCCTCCGGTCCGGCCGTTGTCATTAGCTCTGCAGCAGACCCTGGCCCAGGAGGTGCTACGGGCACGACAGGGTCACATCCAGCAGGCTGGTCCCGCCGGGCGACTCCTTCAAGCCTTAGCAGCCCTTCTAAACTCTGCCCATGCTGGAGCCCTGGTCATGGCAATGCACCACAGCCATACGATCTCCTGCCCTCTACTGCGCCAACTCCATCTTTACCAGcGGTTGGTGTCTCAAGATGTTGGCTTCTCATCGCTGTTCTTCAACGCCGTTGTGCAGATGTTGACGTGGTTGGAAAACTCAGCAGTAGAGACAGGGCCACTCCACAGCCTCCTAAAGTCTCTGGCAGCTCAGTACTCTCACAAACATCGCATCACAGATGTTCGCACTGGATTTCTGCACTTGGCTGAAGCTCTGGCGTACAGACGGGACTCTGAAGTGGCAGTTAGGGGCATTATTGCCTCGCTGAGAGCGGGAGAAAAATGCAACTCTGAACCTGAACTCATCCGAAAAGTGTTGCAGGGCCTCATGGAGGTGAAGTCTCCGTATCTGGAGGAGCTGTTGTCCCTGCTTATGACCATCGGTACAGAGAGCGGAACCACAGGAAACACAGCGGGTCCAGTTGCCATGGTGATCTCTCTGCTGCTTCAGGAAACAGAGGAGCGAGGGGTGAAAATAGAGGTGGATTCCAAAATCACTGAGTCAAAGAAGCCTGGCTCGTGTTCAGGGCTGTTGGTCGACTGGCTGGAGTTGCTTGACCCTGAGGTGACCTCTGTTTGCTCAGAACTTCAGCAGAAGCTGCTTTTTGCTCAAAACAAGGCTAAAAGTGGTGTGAGTGTGGCCCCGTCCTACAGGCCGTACCTGTTGGCCCTCCTCACACACCAGTCCAACTGGAGCACCTTACATCAGTGCATCAGCTCTCTGCTCAACAAACACCGAGACCAGAGACTGGACCCAACCTCGGCACTAGACTTTCTGTGGGCCTGCAGTCACATTCCCCGCATTTGGCAGGGCCGAGATCAGAAAACCCCTCAGAAGCGCACGGAGCAGTTTGTGTTGAAGCTGTCTTCTGAGGAGCTCATAAGCCTTGTGGACCTCATCCTGTCAGAGTCCGAGCTGAGCTGCCGTGACTCGGCCACCTCCAAGAGTGCTTTGGACCAGGTCTCCTGTTCTCTTCTCCAGTCTCGCCTGCCCCTCCTGCACAGCTGTCTCCACTCAGACCCGGACAGCGTCAAGAAAGTCTCAGAGTACCTCATCAGCTGTGTTAAGAAGTGGGGAGACAGTATAATGAGTAAGAGGTGTCAGACGCTGCTGCTGCAGATCTACCTGCACTTCCCAGAAGTCATCCAACACATCCGCCTACCAGAGGCCACCCTGAGCGCCGAGGGAGCAGCAGACGGCAGCACCTGCAAGCTGGATGTTCTCGTGCATCGTCTCATCGCTCTGCTAGCTGACACAGGAGACTCCAAATCAGCTGAGAGCCGCGCGTCTGATGCCAGTCTGGCCTGCAGGAAACTAGCCGTATCTCACCCTGTGCTTCTACTCAGACACCTGCCTATGATCGCTGCGCTCTTGCACGGCCGCATCCATCTGAACCTGCAGGAGATCAGGCAGCAGAACCATCTGACCTTCTTCAGCGATGTCCTGGTGGTCCTGGAGCTGCTGCAGCCGCTGGTTTTCCACTCTGACCACCAGAGGGCACTGCAGGACTGTCTGCTGTCCTTCATCAAAGTACTGCAGAACTTCAAGAGATCATCCCGTATGTCCATCATAAACAAATTTGTGCAGTTCATCCAAAAGTACATAACCCATGATGCGGCATCTGCTGTGCCTTTCCTTCAGAAACACTCAGACGTGCTACAAGGACTATCCACGGAGAATCCGGACCTGGTGCAGCTCAAGTCTTTGCTCGCTGGACTGACTCTGCCGGTAAAATCCGGTTCCTCCGAGAGTTCCGCTGAGGACAGAGACGCTGAGGATTCGTCCTCCGGCTCTCTCCCTCTAGTCAACATCTCCGCTTCCATGCCGCTCACTGCGGCTGACATGACTAAATGCCTGAAGAAGATCTCCAAAGGAGAAGCACTTGAGGACGTGTTTGAGGGGTTGACTGAAGTGGATGAGAAATCCAAAAGAAATCCAGAAATTATTCAGTATTTTGTTAACGATCTTCAGAGGTTGATGAGTTCCCCTGAAGAAGTGTGCCGCAACATGGCCTTCAGTCTGGCCCTGCGGTGCATCCAGAACATCCCCAGTATGGCTGCTGAATTCCTGCCAACCTTCATGTACTGTCTGGGCAGCGGGAACTTTGATGTAGTGCAGACGGCCTTGAGAAACTTACCTGAATATGTGCTGCTCTGTCAAGAACATGCCGATATTCTTCTCCACAAGGCGTTTTTAGTGGGCATCTACGGTCAGATCGACACCAGCTCCATGATCGCAGAATCCATGAAGGTCCTGCGCATGGAGGCAACGACATAGACGTCCGTTTCCAACGTGTCGGTACACAGAGGTTCGCTTTGACTCAGAAGTGTCACGCACCGCTGATCCTCTTCAGATTTGTATTCAGATACAGCATTTGACGTTTAAATACTGAAAAGCATTTTATGTTTCCAGTGAGTTTTCCAGTTTCTTGTGTCCGCTGGGAGTGAAGCCTGTCATAAGTGTGTTTGTCTACTgctttgaataataaaacaatgagtTGTAGAAATGCTCCTAA

Function

GO: NA

KEGG:

id description
K13138 INTS1; integrator complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250530.1 lncRNA upstream 135147 16596292 ~ 16597215 (+) True LOC122342129
TU30709 lncRNA upstream 424344 16307798 ~ 16308018 (+) True G20656
TU30699 lncRNA upstream 439556 16292605 ~ 16292806 (+) True G20647
XR_006248599.1 lncRNA upstream 851693 15879468 ~ 15880669 (+) True LOC122333245
TU30493 lncRNA upstream 853033 15879130 ~ 15879329 (+) True G20469
TU30836 lncRNA downstream 27325 16783234 ~ 16783841 (+) False micall2a
TU30837 lncRNA downstream 28368 16784277 ~ 16784497 (+) False micall2a
TU30839 lncRNA downstream 30923 16786832 ~ 16787050 (+) True G20744
TU30900 lncRNA downstream 233303 16989212 ~ 17052645 (+) True G20798
XR_006250505.1 lncRNA downstream 251486 17007395 ~ 17019304 (+) True LOC122341954
XM_043225482.1 mRNA upstream 16685 16700421 ~ 16715677 (+) True tmem184a
XM_043228944.1 mRNA upstream 33195 16697960 ~ 16699167 (+) False LOC122331507
XM_043235699.1 mRNA upstream 257173 16473822 ~ 16475189 (+) True LOC122341966
XM_043235845.1 mRNA upstream 269672 16461318 ~ 16462690 (+) True LOC122342073
XM_043235306.1 mRNA upstream 356871 16372769 ~ 16375491 (+) True mrm2
XM_043233888.1 mRNA downstream 144 16756053 ~ 16769443 (+) True si:dkey-43p13.5
XM_043233885.1 mRNA downstream 144 16756053 ~ 16769443 (+) False si:dkey-43p13.5
XM_043233887.1 mRNA downstream 144 16756053 ~ 16769443 (+) False si:dkey-43p13.5
XM_043235943.1 mRNA downstream 14636 16770545 ~ 16784811 (+) False micall2a
XM_043235941.1 mRNA downstream 14636 16770545 ~ 16784810 (+) True micall2a
TU30773 other upstream 32880 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 32880 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 32880 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 527194 16179910 ~ 16205168 (+) False gna12a
TU30221 other upstream 1563104 15168338 ~ 15169258 (+) True G20295
unassigned_transcript_287 other downstream 250005 17005914 ~ 17005985 (+) True trnat-cgu_1
XR_006250523.1 other downstream 357243 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 407792 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 963273 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 1148695 17904604 ~ 17906643 (+) True polr3k

Expression Profile