RNA id: XM_043233887.1


Basic Information

Item Value
RNA id XM_043233887.1
length 2729
RNA type mRNA
GC content 0.44
exon number 4
gene id si:dkey-43p13.5
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16756053 ~ 16769443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTGAGCGTGAGCTTTTTGGCCCCTTTTTCTTTACATCGCATCCCTAACAGATCTCAGCTATGCTGTGAATGCTGTGATGGAAGTCTATGTGCCATGAAAGTGCAAGTTGTTCTTGTCCAGTGTCGCCGATTTCATCAGTATGGGGAAGAGAAGGAAGAACAGCGTGCCGTCTTCCACTCTTCGGCTGCGCACTTCTTCCCGGCGTTTCCCAGCAGGTTGACCTCACCGCAGATCTTCATCCCCGGGCCTCTGCTCAGCTACGAGCTCCTGCGCAGTTACCTGCAGCCAGAGCCCTGCAAACAGGCCTTGCTTTTGGCCGCTCAGTCCTCGGGACAACATGCTGAGAACATCGATGAACCCCGGCCAGTGAAGCAGCGGCGAGCTCGGGCCAACTACAGCAGCTGGCagctggaggagctggagaagGCCTTCGAGAGCACCCACTACCCTGACGTCTTCATGAGAGAAGCCCTGGCCCTCAGACTGGACCTGATAGAGGCCAGAGTGCAGGTGTGGTTCCAAAACCGCAGGGCTAAAATGCGCAGGCAGATGAAGCTCCAGAGCCAGGCGGGAGAGCAGTGCGTCAGGCGCGACAGTGACGATAGACAGGTCGATTCATCCAGCAGAAGCACAGCTCCAGAGCTCCACAGCAACAGCAGCCCAGGCTGGGACAGCAAACACCAGAAAGGGAGCCCCACTTGGTCGAAACCGTCCTCATCAGCTATCCACAGCCCTGTAAGCGACATGCTTCAGCTGCCAAGAGATCAGGAGGGGTCAGAGGAGCCCAGTACAGAGGACTTCCGCTGCTGTAGCATTGCCAATCTGAGGGCGAAGGCCAGGGACTATGAGGCAGAGATCCACAGCACGGTGGCCAAGGCCAGCAGAGAGAGGCAGATGAAAACTCAGGTATCTGCCACAGGCCTGCACAGAGACTGAAACTGATGCAGCCATTATACAGTACCTCAGAATCACACAGGACATATTagaaataacattacattttctatttattattatgaacaaTCACCCAAGTGATGAGGTTAAGCAATGGGACCGAGAGCAGCAAAACACACtccaaatagtttttatttcttcGATTGTCACAATGTCGTGTATTATCTGTGAAACCAATGGACCCTTTTCAAATTTCTCAGAAACAGAAGTCAGTGTAGTTGGGTAGACTTCTATAGAGGACGAACAGAAATTAcaacaaagtgtttttttatggcTTTAACATACAAAGCGGAAAAAACATTGATTTCGTCagtaaaaagagagaaatatgtCATATTTGCAGTTTTGTTGAAAACACTCAGAAGTGTTAATTTTGCAAGCAATTTTTTACCTACAGTGTaacaaagtgttttaaaaatccaaatataAAAGATATCTGCGGAAACACATCATCTCAGTATTTAAGAAGGGTCCAtactttttgtattataaaaacaaatgtgaagTTATATGTAATCtactcttttattattatttgttctttGATAAGATTGGTTGCTTGCTTCAGTggacatttagttttttcaaatgTGGTTGGACTGACAGCTAGTGAACGAGAGGAGCTCGAGAGGAAGCTCACAGTGATCTCATCGATGGCCAGCTCCTCTATCAGCTATCCTGTTACCCTGCGTGAAAACACAGGATGTCTGCAAGCTGCCACAAGCCCTCCACAAACACAATAGGGACAGACGGCTGAAAAATGACTCgccttttctgacaaaatgtgctttttaaagattgtcacacactttaaatatgtcattttccTACGCAATAGATGCTATTTGTGCTGAACGTTTGTTCATATACTGTAATTATTGCATGCTTTTGGaaatcacttttttaatgtCTTGTTTCACGCTTAacgtttgttgtttttcaagaAAACGTGCTACCTAAAGGGATCGTTCGACCATAAAactaatattctgtcatcatttatccTCATGCAGTTCCTAACCTGAATGactgacttctttttttttcagtggaacgCAGAAGAAGGTATTTTTGAATGGTGCTCGTAGCCAAACAGGGTTTGGGTCcctttgacttccatagtatggacCTGAAACTGAGTAAATAAAGCCGAATTTGCATTCTTGAGTGGACTATCCACTTCAGATTATcctaaaatgtttgtttagaaCGGCAACCCTTCAGAAATTGTGAAATGCAGGACAACTTGTATGACAACTTTTGTGTGACCAAAGCTAGTGTTGAAGAGCCTAGAACTGCATTATCCTTAGGTCTTTAGTTCTCTGAGCCAGTATGGAGTAAGAGTGCCCTCCTCTGGGCAACAGGGTCCTCTTGAGTTTAAAGGGCAGCACGTCTTAAGCAGGTGAACAGTCTATGAGAATTTCATGCATGTGAAATCTTGAAGAGGATTTGATGTGTAACTTGTAGCTCAGATCGTCACATCTTCATCATGCTCGGGTTTCCGTCTTTCTGAAGTTTGGTGTCAAGCTATAAATAGTCCCATTGATTGTGCACCCATCCACAACTTGAGTTACCTAAGTCAAACTTAAAACCATGAGAGGAGGTGGATCATCTGAAATTACACTGAAAGCTATCTCTCTGCCTTAGGACAGCTGAAAGCTGATGGTATTTCTGTCTACATTTGGATTATATGCATTCAGGACTTtaattgtaaatgaaataaGCTGTAATGCTAATTGCagatattatgtttattaaataaagtttagACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250530.1 lncRNA upstream 158838 16596292 ~ 16597215 (+) True LOC122342129
TU30709 lncRNA upstream 448035 16307798 ~ 16308018 (+) True G20656
TU30699 lncRNA upstream 463247 16292605 ~ 16292806 (+) True G20647
XR_006248599.1 lncRNA upstream 875384 15879468 ~ 15880669 (+) True LOC122333245
TU30493 lncRNA upstream 876724 15879130 ~ 15879329 (+) True G20469
TU30836 lncRNA downstream 13791 16783234 ~ 16783841 (+) False micall2a
TU30837 lncRNA downstream 14834 16784277 ~ 16784497 (+) False micall2a
TU30839 lncRNA downstream 17389 16786832 ~ 16787050 (+) True G20744
TU30900 lncRNA downstream 219769 16989212 ~ 17052645 (+) True G20798
XR_006250505.1 lncRNA downstream 237952 17007395 ~ 17019304 (+) True LOC122341954
XM_043233884.1 mRNA upstream 144 16732362 ~ 16755909 (+) True ints1
XM_043225482.1 mRNA upstream 40376 16700421 ~ 16715677 (+) True tmem184a
XM_043228944.1 mRNA upstream 56886 16697960 ~ 16699167 (+) False LOC122331507
XM_043235699.1 mRNA upstream 280864 16473822 ~ 16475189 (+) True LOC122341966
XM_043235845.1 mRNA upstream 293363 16461318 ~ 16462690 (+) True LOC122342073
XM_043235943.1 mRNA downstream 1102 16770545 ~ 16784811 (+) False micall2a
XM_043235941.1 mRNA downstream 1102 16770545 ~ 16784810 (+) True micall2a
XM_043235944.1 mRNA downstream 1102 16770545 ~ 16781558 (+) False micall2a
XM_043235945.1 mRNA downstream 1374 16770817 ~ 16784811 (+) False micall2a
XM_043235686.1 mRNA downstream 107411 16876854 ~ 16882081 (+) False zfand2a
TU30773 other upstream 56571 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other upstream 56571 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other upstream 56571 16697999 ~ 16699482 (+) False LOC122331507
TU30661 other upstream 550885 16179910 ~ 16205168 (+) False gna12a
TU30221 other upstream 1586795 15168338 ~ 15169258 (+) True G20295
unassigned_transcript_287 other downstream 236471 17005914 ~ 17005985 (+) True trnat-cgu_1
XR_006250523.1 other downstream 343709 17113152 ~ 17117041 (+) False nsmce1
TU31020 other downstream 394258 17163701 ~ 17195884 (+) False LOC122341316
TU31132 other downstream 949739 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 1135161 17904604 ~ 17906643 (+) True polr3k

Expression Profile