RNA id: XM_043233916.1


Basic Information

Item Value
RNA id XM_043233916.1
length 3081
RNA type mRNA
GC content 0.53
exon number 14
gene id cog1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14111547 ~ 14119590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTTTACGTGGAAGGAGAGCCGTTCGTGCTTCCGGGTTTTATTTCTGCAGTTATCTGCCCATTTTTAAAGAGATGGCTACTGTACCGGCCCAGTCTCTCCGGGTCTCAGAGATTAAAGACCCCACCGTTTTGTTTGAACGGTACAGCACGGAGGAGATCCGTGCTATCGAGAGGAAAGTGCGCGGAGAGATCGAGCAGAAGAAGGAGGAACTTCGACAGATGGTCGGTGAACGTTACCGGGATTTGATCGACGCCGCTGACACGATCGGTGAGATGAGACAGTGCTCGGAGAGTGTCGTTCAGTCCATCCAGGACATGTACCGGTACTGCCACAAACTCAAACAGGCGAAGCACGCCCCTCAGTCCAGCGGAAAAGCTGAGGGTCAGAAACAGTCGCAGGAGAGATTCTACACGATGGCCTCGCAGATAAAGCTCCTGCTGGAAATCCCGGAGCGTGTGTGGAGCGCGATGGAGTCCTCGCAGTACCTGCAGGCCACACAGCTCTACCTGCTCTGCTGCCACCTTCACAGCCAGCTGCACTTGGAGGGAGGAGGGCATCAGTACAGCCCCGTCCTCTCTCGCTTCCCCATCCTGGTGCGCCAGGTAGCAGCTGCTGGTCATTTCAGGTCTACAATCCTATTGGAGAGTAAGTCTGTGCTGCGTGGCAGGGCTGTGTCTGATCAAGCGATCGCCGAAGCGCTGGTCTCCACCATGCTCCTGGAAGACAGCTCTCCTCGCCAGGCCCTTGCTGATTTCCTGCTGGCTAGGAAAGCGTCCATTCAGCAACTGCTCAATCAGCCCCAGCATGGTGCTGGTGTGAAAGCACAGGTTTGTTCTTTGGTGGAGCTGCTGGTCACCACTCTGTACCAGGCATATGCTGTGTTTTACGTGCCTCCTGAGGGCCAAGTGTCCGATACCGGTCTGGGATGTGGCCTGCTTTTCACTACCTTGGAGAATGTGACCTCCAACAAATCTGGGAAAGAGAAGAAAGTTCTGGACAAGGAGATGAGCACAGGAAGCTGGTTTAAACACCTCCCCCTCTCGGTGATGAACTTCCAGCCTGCTCTTCGGACACTAGCGCAGCCTATCCAGAGGGAGCAGCTCAGAGACACGCTGCAGCAGTGGATTGATACcTGCAAGGAGGATATCCGCAGCGGAGTCAGCAGTCTTCTGGTCTATGTGAAGAGTCTAAAGGGTCTGGCTGCGATTCGGGATGCAGTGTGGGAGCTGCTCAGCAGCGAGTCCATCAGTCTGCACTGGAGCACTGTGTGTCAGTCCCTCCTCGAGCGACCTCTGGCCTTGTGGGATGACCTTTTGCAGCAGCTCTTCCTGCAGCGACTTCAGGCGATCACTCAGGAGGGCACAGAAGGGATCTCCAGCAGCTCCAGACAACTCTTGTCTTCAGCTCTCCGGGATCTACAGGGTCAGGCCACAGCTGGGAGTTTCAGCCGTGGAGCACAGTACGAGAATGACGTCGCAGCTTTCCTGTGGTCTGAGTCTCAAGGCGACCTGCTCAACGACACAGCCTGGGTGAATGTAGCCCAGCGCAGCCCACAGCAGAAGAGCGGCCTGTCCATGAAGACCCAGGCCCTCACCCCCTGCGTTCAGACCTTCTGCTCCTCCCTGGACTCTAGGCTCAAAACCAAATTAGATGATCTGCAGCACTACTTGCCCTCTGAAAAAAATGGCAAAGAGCTTTCAGAGATGGTCCCAGTCACCACTAACTCAACTATTAACCGCTTTATGGATGCTGGGGCCGTGGAGGACACTCTTAGAGAGCACTGCTTGGCATGTGTCCGGGACATCCTTTCCAGTGTGCGTGCCGAGCTCGCTACCGCCCAGGCCAAGACCAACAGCCCCAGCCAGTTAAGTTCAGTGCTCTTTATGGCCAGGCTATGCCAGTCAATGGGGGAATTGTGTCCTAGTCTGAAACAGTGCATTCTGGGGAAGCAGGGGGGCTTGGATCCCATAAACAGAGGCACTCCAAGACAGGGCAAGAAGTTAGGCAAAGGCAAGGCAGCGGAGGTCAGCCCAGCACAGTCCAAGTGGAGCTGTCTGAAAGACGAACTCCTGTCCTGCAGCATGGAGGCCTATGGTATCTGGAGCTCAGCACTCACCAGGGCACTTGTGGGCAGTTTTGCTACGACTCTTCACTCTGGAACCGCCGGATCCATCCTGAGCACCGCAACAAATTGGGAAGAGCTTGAAATACAGGAAGAAACAGAGTCAGGAAGCAATATAATGTCCAAAATTCGCCTCCCTGTGCAGCCGTCGTGGTATGTTCAGTCGTTACTCTTCCATCTGTGCCTTGAGGTCAATAGGGTCGGAGGTCACGCGTTACCAAAGGTCACTCTCCTGGACCTTTTGCGGGGTTGTCTAGATCAGGTGGTGAGCGAGTATGAAAAACTCACTCAAAAAACACAGAGCAAGGATGCAGCCCTCCCCATGACCCAGAACAGAGCTTTGCAGCTGCTGTTTGACCTTCGCTATCTCAGTGGCACTCTAGGGTCCCGCCTTGAAGAGGGCAGGAGTTCCCGCTCTCAGCAAGACCCAAGGATCCAGCAGGTCTGCGACTCCCTGGAAAGTCACATTGATCCATTTGACCTGGATGTTTTCACTCCACATGTGAACAGCAACCTGAACCGACTCTCACAGAGGACCTCTGTGCTTTTAGGACTGTTGTCTGGTACGGAGAAGCAGTTTACCTCTAGGACCAACAATATCAACTCTCAGGAACCGTACAACATCCTTCCTTTGGCAAGCAGCCAGATCCGGTTTGGTTTGCTGCCACAGAGCATGACAAACTCTCGGAAGACTAATTCAGCCACGCATGGAGCAGATATCACCAGACCACTGgtGGCTCCCTCTTCTGCTTCTGCTCCACAGGACAGTTTCCGCCCAGGAAATCTCTTCAGGCAGTTAGCCAATCAAGAAGAGGAATCCGCAGCCCCTTCTCTCTTTAAATTAGGCTGGCTTTCTGGCATGGccaaataaacttttattaaaaaattgctatttttttaatccgCATACAACactatgtaaaataatatttaaaatacattttgaaatgttgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29815 lncRNA downstream 51055 14059581 ~ 14060492 (-) True G20029
XR_006250534.1 lncRNA downstream 181270 13917700 ~ 13930277 (-) True LOC122342150
TU29698 lncRNA downstream 212615 13897631 ~ 13898932 (-) True G19947
TU29639 lncRNA downstream 318945 13786009 ~ 13792602 (-) True gng13b
TU29913 lncRNA upstream 83341 14202931 ~ 14204305 (-) False si:dkeyp-72e1.6
TU29920 lncRNA upstream 100495 14220085 ~ 14221797 (-) True G20095
TU30071 lncRNA upstream 265771 14385361 ~ 14388398 (-) True G20202
TU30083 lncRNA upstream 314115 14433705 ~ 14459554 (-) True G20212
TU30087 lncRNA upstream 327745 14447335 ~ 14457910 (-) False G20212
XM_043233925.1 mRNA downstream 9589 14085488 ~ 14101958 (-) True gna13b
XM_043234025.1 mRNA downstream 54825 14049482 ~ 14056722 (-) True prkar1aa
XM_043234029.1 mRNA downstream 54828 14049482 ~ 14056719 (-) False prkar1aa
XM_043235907.1 mRNA downstream 62848 14044308 ~ 14048699 (-) True rac3a
XM_043235001.1 mRNA downstream 68045 14036320 ~ 14043502 (-) False gps1
XM_043233926.1 mRNA upstream 2549 14122139 ~ 14126578 (-) True rogdi
XM_043233923.1 mRNA upstream 7213 14126803 ~ 14136702 (-) False glyr1
XM_043233922.1 mRNA upstream 7213 14126803 ~ 14136702 (-) False glyr1
XM_043233921.1 mRNA upstream 7213 14126803 ~ 14136702 (-) False glyr1
XM_043233919.1 mRNA upstream 7213 14126803 ~ 14136702 (-) False glyr1
TU29676 other downstream 305569 13805368 ~ 13805978 (-) True G19933
unassigned_transcript_285 other downstream 1010903 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 1018701 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 1024280 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 1026581 13084026 ~ 13084966 (-) True LOC122341303
TU30091 other upstream 315560 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 316625 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 316625 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 316625 14436215 ~ 14439541 (-) False mlx
TU30272 other upstream 1001216 15120806 ~ 15179228 (-) False plcd3a

Expression Profile