RNA id: XM_043233924.1



Basic Information


Item Value
RNA id XM_043233924.1
length 3798
RNA type mRNA
GC content 0.42
exon number 17
gene id rgs9a
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14102015 ~ 14111321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGGCGCACTCGCTACATTCTTTAGCGCTCAATGAAAACCTTGCACAGTCTGAACTTTTTATGCCACAGTTTACTGAACctttaccaaaataaaaacagtttattgGACAggattctatatttttttaaacatttgcatttacgaGATTAAAGTTTTTGTGGTGGTCGAccgatactgtttttttttcgaGAACAGGGTGATGTCAAGATATGTatcgtttttatttgttattatcaatatgttttgaaaatgtgtaaaataaacatacttacATTGCTACTTAAAGGTTTACGTCTAAACGAAAACTTCTGCACAAAGAATGTAACCCTGCACTGtcagaaaaaatatatggaACAGTTTATTGGAcctttaaacaatttatttgtaaaaagtttacatgtttatgtttatgtttaaagttTTTGTAGTGGTCGACTGACAACCAGTGCTTAAAAGCAGGATGGCCGACATAAATAAGccaagctttttttatttttattttaatcaatgtatgagaaatgtgaaataatttagaaatgatgATTGTGTCACATAAACAAACTGAGATTTTTAAACTTTAGGCAGTTTCGAATTTAAGGATGCACTCAGTATATTTTTAGcactaaattaaaacttttatacaAAGAATTGAACCCTGCACtgtcaaaaaaatatacattttatggaacattaaaaaacacatatatttttttaaatatatcggTTGGCAATAAATGGATCGACCACTATTTTGTATCTTATTTGATCGGGATTTATGGATCGTATAGTATGATATACTGAGAATATCACATCTCAAAGACCTTTTATTTGCTAAAAGAATTATGGGCTATCAATCGGGGGGCAGATTGCGTGTAGACAGATAGTGTGCAAGTGTTGGTAATTTACAGGCCTTAGAGGTCCAcgtatcaaatatgatacagaaacattttgataaatatcaTTAAAGGATTTCTAATCACATGAGATGATAATCAGCTAATCAGAAGACCGGTGCATCTAGTTATCTATTTTATTCTACTTGGAGCTGGTTACATATTCGTGGGAACTGTCACGTTGACATGACATGAATGCACCTGTAAATGCTTTTTGCGAAGGTTTTCATTGAGAACTAAAGAATGCAGCGAGTGCGCCTTCAAGTAGTGTGACTGGCTGAACGTTTGCCCTCGCATGACATGAATGCACCTGCACAGGGCATCTTGAACCCATATGAATCAATCTTACCCACCAGAGGACCGTCTCGGCCAGGGTTCCTCAAACCTCaccctggaggtccaatgcactgcagagtttagctccgaCCCTGATGAAACTCgcctacctgtgattttctaatgatcccGAAGACGCTGATTAGCATGCCCAGgcgtgtttgattagggttaaagcgaaactctgcaggaaaatggatCTCGAGGTCCGGACTCGAGGATCACTGGTCTAGGCTGTGCTTCTGGTCATTTCTGGCAGCGTTGTCGCCTCTGTGTGTCGCCCCCTGTCGGTGAGTGAGAGCAGTGACGGCGGATAACAGAGCCACGCCGTGATTGGTCCGCTGTCACTTTCTCGTGTTCGCCGCTCGCGCTCTTCTCAGGTGTGTGCGTGAGCAGGGATCTGCGCTGTCCGCAGCTCTTTGAAAACCTGAAATTATATTCTCAGTAAGGCTGAGAATATAATCGCAACAAGATTTGCCTTCTGCCCTAGAAAACCTTTTGTTTTccgctttatttgtttttgtggactACAATATGACTATAAGATCGGACCGAGACCATGGACAGCGTTATCGGCCACGAATGTCCTGCCTTAAAAAGGTGGAGACCACAGTGGTTCAGATGCAGGACCCATCGGCTGGAGTGAAGGGAACGAGTCAGAAGCTCAACGTTACAACCATTCCCCATGCCATCACTGGTCAGGATATTGTTGCATGGATCGCCAAAAACATGAACATGGACAGTGAtgAGGCTCAAGCATTTGGAACAATGTTAGTGGCATTCGGTTACATCTATCCTCTGCAGGACCACAAAAAGCTTGCCCTCAGACCAGATGACAGTTTGTACCGCTTTCAGACCCCCTATTTCTGGCCTGTACAGAAGTGGAAGGCTGAGGACACAGATTATGCAATCTATCTGGCAAAGAGAAACATTCGAAAAAAGGGTGTGCTTGATGCTTATGAGCAgGAGGAATACAGCAAACTTCACAAATGGATGAACCACAAATGGGATTTTATCGTGATGCAAGCTAAAGAGCAGTACCATGCCGGGAAGCAGCGTCAGAAGGCAGACAGAGTTGTGTTTGACTGTCAGGAAAGAGCCTACTGGATTGTCCACAGGCCTCCACCGCAAACCCACAGCGCTATGGATTGCGGCCTGGAACGTCACATTGACCCTAATGTGGAGGAGaaaaaaacctaCGATTACTACAGAAGAATTatCATCTACACACAACAGGCCATCATGAGGTCAAGGGTCAAGTCTTCAGTATCTCTTGGAGCCCTGGTCAAATATGTGACGACACTTAAGAACCACGACCCATTCCTCGTTCCCTGCCTCCCCAGCAATCCCTGGATTACTGACGACGACGCTTACTGGGAGCTGAACACGGCAGATGTTGAAACTCCCACAAAAATGAGAGTGGAGCGTTGGTCCTTTAGCTTCTATGAGCTGCTTAATGATCCACGGGGCCGTGCAGACTTCAAGATTTTCCTAAAGAAAGAATTCAGCGGTGAGAATCTAGCTTTCTGGGAGGCCGCCGAGGAGCTGAAATGGGGCACGGCAGCTTCTATGTCAGAGAAAGCAGAACAGATTTTCAAgACCTTTTTGGCCCCAGGAGCACCACGATGGATCAACATTGATGGCAGGACAATGGGCCTAACAGTAAAGGGACTGGAACATCCTCACCGATACGTATTGGACGCCGCCCAGACCCACATCTTTATGCTGATGAAAAAGgATACCTTTTATCGCTACCTGAAGTCACCAGTTTACAAGGAAATGCAGAAAAAAGCCATTTCTCCAGCACCACACGATTTCTCTGAGGCCCAGCTGCAGCAAAACATGAGGAACCGCAGGCCGAGCGTCAGCCCCATCATCACCTGGCAGAAGGAGCAGGAAGAGAAAGCCAAAGCAGCAGCCGCAGCTGGACCCATCGACATCAAGAAACTGATGGCCAGCAAACTAGACCGCAAATAGAAAGCTGAGACAGCGGGACATGCTGGAAATGCTTCACCTGACAATCTGACTAATAAAAAGAGACCCGTACATGGCTTAATGATCCAATGCAAGGTCTTATATAATCAAGCTAAACTTTGAAACCCTAACTTCCGCGAAATTTGTTGTATATATGACTCCCGAACATAGTTTCTAGTTTCATATTGCTacactcaaatattttttgtagtttgcaaaatactttttcagATCACACTTGTTTCCATGCAGTGATTCTGttcacacaacacacatttCAATGTGTTTACCTGTATAGCGGTTTCCCATTACAGTGTGAAGATGTTTAGTATGTGTGTGCAGTAGCGAATACCTGTTTATGTTCGAGTGTAGACAGCATGTTTATTGGTtcagtgctgtgtgtttgtaataccGCCTGCAGTGTTGAAGAAACGTCTTTGAAAATGTAGCTaatcttttccatttaaattacaaatctACAGTCAAAACGTCATTTTATTCAACTGTATAACCTTTACTTAAAAAGCCTCTTTAATTAAGTTACAAAAATGGAATATACACAAACTCTTAATTAGGTTAACTAACAAGgacatga

Function


GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU29788 lncRNA upstream 111 14100173 ~ 14101904 (+) True G20009
TU29750 lncRNA upstream 104934 13996470 ~ 13997081 (+) False slc16a3a
TU29717 lncRNA upstream 158524 13940616 ~ 13943491 (+) True G19963
XR_006250533.1 lncRNA upstream 181746 13913926 ~ 13920269 (+) True LOC122342149
TU29625 lncRNA upstream 283793 13815353 ~ 13818222 (+) True G19891
TU29726 lncRNA downstream 8864 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA downstream 9115 14120436 ~ 14122057 (+) False smim22
TU29727 lncRNA downstream 9115 14120436 ~ 14123128 (+) True smim22
TU29877 lncRNA downstream 37143 14148464 ~ 14150958 (+) True G20057
TU29948 lncRNA downstream 191829 14303150 ~ 14304893 (+) True G20113
XM_043235112.1 mRNA upstream 17509 14076202 ~ 14084506 (+) True slc16a6b
XM_043234943.1 mRNA upstream 28611 14063275 ~ 14073404 (+) False wipi1
XM_043233927.1 mRNA downstream 9058 14120379 ~ 14122054 (+) False smim22
XM_043234922.1 mRNA downstream 46403 14157724 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234920.1 mRNA downstream 46405 14157726 ~ 14195322 (+) True si:dkeyp-72e1.9
XM_043234918.1 mRNA downstream 55088 14166409 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234921.1 mRNA downstream 55088 14166409 ~ 14195322 (+) False si:dkeyp-72e1.9
TU29734 other upstream 48983 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 188321 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 399662 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 1114102 12835381 ~ 12987913 (+) True LOC122332158
TU29797 other downstream 7146 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 144169 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 423858 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 507673 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 553598 14664919 ~ 14671568 (+) True G20172

Expression Profile


XM_043233924.1 Expression in all Baseline Samples

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XM_043233924.1 Expression in each Bioproject

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XM_043233924.1 Expression in each Sample
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