RNA id: XM_043233951.1


Basic Information

Item Value
RNA id XM_043233951.1
length 10198
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC122339456
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13718936 ~ 13764372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCGTGTAGAGTTGGAGGAAGTGCTCTGAAAGCAAGCGCTTGAGCTCTTCCTGCAGTTACAGGGATGAATGCATGAATGCGAGAGAAGAAAATGGCGATCGAGCAGGACAAATATTTCCCCTCCTAGACTCTGCAAATGTGTTGAATTTCTATAGCCTTAttatttgctttcatttcatCTCTACTGCACTTTAAACTACAAGAGAGAATTGGATGCTATTGCCACCAAAGACATTGAAGAGAAGCAACACAGGGAAATCATTCGAAACACGAATGGAGAGTGGACGGAGGAAAGTGTAGAGCTCATTGGAATGACGATAAGGAAGAGGGGGCTGGTATAAAGtgCCAGAACATATCAAGTCCAGTTTCAGCCAGCCTCAGTCTGCCAATTAGAACAGCAGCACCTCCACTGTAACCTGCGCCATCAGCAATGCCAAGAGGGCCCCAGCCAGCGGCCAGCCCCAAGCCCTGCCTCGGTACCCGCTCTGTGAAGTTCCGCCGCGTCTCTGTCAGcacaaacagaaacagctgttgAAGCGTGGGCAATCCCTCACGGTCCTTGCTGCCACCCTGGGAACTCAAGTGCAGCTCAACTCTAGCCAGCCAGGGGAGCTTACGACTGAGAGGTCTGTCCTACACTGCGCCCAAAGCCACCTCTCAGGCATGGCTCCCATTCGGGATTCCGTCAGCCACTCCCCTAACCAAACAGgtttggaacatgCTGGTCTGGATCCTCAGTATGAAAATTCACCGTGGAGCTCTGGCTCACCTTGCAGTGACTCAAACAGCAACTGGGGAAAAGTTATTGTAGATAAGGGACCCTGGCCCTCCATCACTGGTAGTGACCCAGAGTTAGCCTCAGAATGTATGGATGCTGACTCTGCCTCCAGCTCTGGGtcagaaaaaaatcttagtATGATGCCGTCTGGAAGCAATGGTGGTGACAACAATGGCAATAGACAAGGTTCTCATTTCATGGTTGCAAATGGCAGCAATAATGTGGGTAATGGGAGTGTTAAGGGGCCTTGGGGTGTATCCAATGGCTCGATGCTAAGCACATGTCAAGGCTCTGGCGAGGACCCCAGCGGCAAACTGGCAGAAAGCAGCcatggcaaaataaatgcatggggTACCCCAGGTTCCTCAACCAATGTAGGTATAAATCCAAGCACTTTGAACCCAAATGCCAACCATGGTGCCTGGCCCGTTCTTCAGAACACTGGGCCCAACCCCCATGGGTCTGCGGGGAATGGAAATGGTGGCACCAACACTCAACAAAGCACCATAGGTCAAACACCCAGCATGCAGAGTATCAACTCTAAGATGTCCTGGGGATGCCTGCAGGAAAATATGTCCGAAGCTGAAGTCAATGGTACAAACAAGGTTCCAAGTGGGCAGCCTCAAAACCTTAACACTGAATTTAATGGACCAAATAACACTACTAACACGATGACCTCTAGTTTACCAAACTCTACAGGTTCAATGCAGATGAATGAACAGCCCCCAGGGCACCGAGCTTGGCCTATGAGTACAGGGGGCTCCCCTCAGCTCCCTATTTCTCCAGTCTCTAATGGCACTTCCAattctcaacatggcaacagtGAGGGAATTAACAGCAGGTCTTATGGTACAGCATGGGGTGTTCCACCCGGCACTAATTACTCTGGAGACAAATGTCCCGTCCCTAAAGGCCAAGCTGTGGGTGACACTGTGAATGCAACTCTAATGCAGTCTGGAGCCAATGGCTCCTCTGTGAGTGCTGCttctttaaagaataataataataatgggaTGGGCAGTCGTGGAGGAGGTTGGGACTCGGGGCCCACTACCTCACAAAGTATGTCTTGGGGAGCAGGCAATGGTGTGGGCCCAGCTGGGATCCCTCGGCCCTGGGGGAGTGCCTCTtcctcctcgtcttcctcttcctcatcatcTTCAAACACTGGCACTAAGGTCTCAAACGGAGAGTGGAACACTTTGCCCAGCAACAGTCAGCATTCCAATGATAGCACGAATGGGAGCAGGAAGGGAACAAATGGATGGAAGTCCTTGGAGGACGATGCTCTTGGCATAGGGAGCTCTGGTCAAGCGTCACAAGGCAGCACATGGAACAAATCTACGGGCAGTGAAGGAAGTGGAGAGAGCTCGGGAGGTCGCAGTGAGAGGGATGGGCAACGTGGAGGCAATCGAAGGAGGGGTAATCAGCAGGGTATGATCAATGCAGCTCTCTCTAGAATCGACGTGGACCCCAGGGTGCTGTCCAACACGGGATGGGGACAAACTCCAGTCCGCCAAAACACTGTGTGGGATGTTTCAAGCTCTGATAAAAAGACAGGAAATGGACAGTCAGGATGGGGTAGTGCTCCCCCCCAGGCGTCTAACTCAGGTGGTTGGGGAGATGGAACCAGCACCAACAAAAGTAGCGAATCTTCAGTGACTGGGTGGactgaaacaaaacattcaaCAGGCTGGGTGGAAACCAAAGTCCCAGTTGGGCAAAGTGGATGGGAGGATGGTCCTTCAGTAACGATGAACAAAGGCAGTTCCTCATGGAATGCCCCTAAGGATGAGAAGTCCTCCTCTTGGAATAATCCGCCAAAGGCAAAGCAAGGATGGGGCGGAGAGGGATGGGGCGGAGAAGGCCCTAAGGGAAACCACTGGGGAGAGCCCCAGAAGTCTGGTTCAGGTGGCTGGGACAGTGACAGTGACCGTTCTGGATCGGGCTGGAGTGAACCTGGGCGGTGCGGGACAAGCAACACCTGGGGAGGCAGCGGAGGCACAAACACTCCTGACCAGAGTGGTCCAACCACAGGATGGGGAGAGCCAGCCAAGACCAACAATCAAAACCAAACCTGGGGAGAGCCAAACAAATCAAGCCACTCCAACCCTACCTGGAGTGAGAATACAAAACCGAACAACTCTTCAGAGTGGGGCAAGTCCCAAGATTCCAGCATGGGAACTTTCAGGAGTGGGAGCACCTCTCAGACTGGAGCCCCTGGTCAGAGCAAGCCTACAGGATGGCTGGGAGGGCCGATGCCTACTGCTTCCAAAGAAGAAGAATCTACTGGATGGGAAGAGCCATCGCCTGAATCCATCAGACGTAGAATGGAGATCGATGATGGCACTGCAGCATGGGGAGATCCCAACAATTATAAGTACAGCAATGTAAATATGTGGAACAAAAACACTGCTGGAGAGCAGGATGGCATGGCTGTATCTCAGCCCCCGCAAGCCCAAAGTGCCATGGCTCCAAAGGAAAAGAATTGCGGCTCAGgGTGGGGAGAGCCATATGGTGGGCCACAAAAGATGGAGTCCTCTACCTGGGGTGAGCATGCTGCTCCACCTGTCACTGTGGACAATGGCACGTCTGCTTGGGGAAAGCCTGTTGATACAGGTTCCAGCTGGGAAGGCTCAGGCAGGGAAAACTCAGGAGGCAGTGGTTGGGGCAACGCTGCTGTAGGACAGCAGTCACAGCACAAGTCTGGATCCAAACCTATGCAAGATAACTGGGGTGGAGAGGAGATGTCCATGACAGGGCACTCCAACtgggaggaggaagaggaagtagAGATAGGCATGTGGAATAACAATCCTTCACAAGAAGGGAACCAAACTGGAAATTGGCCCTACAAGAAGATGACTCCAAAGCTGAACAAAGGACCCAACAAGCAAGATGATTCTCCATGGATGAATCAATTTGTGAAACAATTCAACAACATGTACCCTAGGGATTCTGCTGAAGACTCCCTAAAGAGCAATAAGATGGATATGTCTGGAGGAATGACAGACAAGCGCATTGATGTTGACAAGCATGTTCTTAATATCGGAGAGTACGGGAAAAATCCTTCTTCACGCCACCAGATCCACAAAGACTCTCCTATAGACCGTAATCCATATATGGATAAGCTTTCACTGCCTGTATATGATAGCTCTGTAGCAGAGGAGTCCCAAAGCTCCCAGATCACTTCCATGCAGAATATCAGCTTTTCCCCTACAAATAATGCACTGCCAAACCAGTGCAGCTTGCCTCACCATCCAAACTCTGCCTCTGTTAGGCAGAATGTAAACATGTACGGTGTCAGTAATGCAGCAGCACAAGGCCGGAATGCCCAGCAGCCTCCAGCACAACCTCTGAACTCCGCTCAGCCCAGTCTACGCAACCAAGTGCCTCCTCCACTACTTCCCTCTCAGGTCCCTCCACCCCTGTTGAAGTACTCTCCGAATAATGGAGGTCTGAACCCTCTGTTTGGCCCACAGCAGGTGGCCATGCTGAACCAGCTGTCCCAGCTCAACCAACTGTCTCAGCTCTCTCAGATTAATCAGTTACAGCGTCTCCTCTTGCAGCAAAAAGCTCAAAGCCAGAGGACCATGCCTGTTAACGGCCGCCAGCAACAGGAACAGGGGCGTGGTCTGGGTCCGTCCCAGCAGATGATCCAGCCTCCCCGCCATCTCGATCCCTCCTTGATGAAGCAGCAGGCTTCCCCTCAGCCACCCTCGCTGCACCAGCCCAGCCTCAAGTCCTATATGGAGAACTTCATGCCCCCCAATGCCTCTGACCTGCAGAAAGAACAAAGTTCACTGAGCTCGTTCAGTAATTTCCCTTTAGGTTTGAACTCAAACTTGAATGTAAGCAACCTCGACATTGGCAGTGTTGGTTTTAAGGAGCCACAGTCCCGTCTGAAGAAGTGGACTGCCATGGACATTTCCGTTAACTCGCCACTTGATCAAAACCCCAGCAAATCTGGTGCTATAACATCTGGCCTGAGGCTTGAAGACTCACCCTTTGGTCCATATGACTTCATCAATGCCAGTAACGCTCCCATCAGTCCTCCTGGCTCTGTGGGAGATGGCTGGCCCAGCCCTGCCAAATCACCTCATGGTTCCACAAATGTCAACTGGCCACCAGAGTTCCGTCCTGGTGAGCCCTGGAAAGGATATCCAAACATTGATCCTGAAACTGACCCATTTGTCACTCCTGGCAGTGTGATTAATAATCTCTCCATTAATACAGTCCGGGATGTTGATCACCTCAGGGACAGGAACAATGGGCCATCCTCATCACTTAACACCACGCTGCCTTCAAATAGTGCCTGGACATCCATTCGTGCCTCCAACCACAATAGTTCCCTCAGCAGTACAGCACAAAGCACTTCAGCCAGAAACAGTGACTCCAAATGGTCTCCTGGTACAGTCACCAACACCTCTTTGGCTCATGAGCTGTGGAAGGTTCCTCTCCCCTCAAAAGGTATCTCTGCTCCGTCCCGCCCCCCGCCTGGCCTGACTGGCCAGAAACAGCCCTCATCTTGGGATAACGGCTCTCTGAGACTGGCAGGCTGGGGTAGCTCTGAATCCAGATTCAACTCTGGTTCCAGCTGGGGTGACAGCAGCTCAGGGAGAACTAATTGGCTTGTTCTCAAAAACCTCACACCTCAGATCGATGGCTCCACCTTGCGAACTCTGTGCATGCAGCACGGTCCACTGATCACATTCCATCTGAACCTTCCCCACGGCAACGCTGTCGTCTGCTACAGCTCTAAAGAGGAGGCGGCAAAAGCCCAGAAGTCACTGCACATGTGTGTTTTAGGGAACACTACTATTCTTGCAGAGTTTGCTAGTGAAGAGGAAATTAATCGTTTCTTTGCACAAGGTCAGTCAATGACTGCCTCCCCCAGCTGGCAGACGCTGGGCTCTTCTCAGAACCGAATCGGATCCATCGAGGGTTCTCACCCCTTCCCAAACCGCACTGATCCAAATCACTGGAACGGCAGCGGGCTGTCAGGAGCTGGCAGCGGAGACCTGCACAGCTCGTCTCTCTGGGGTGTCCCCAATTACTCCACGAGCCTGTGGGGCAGCCCCAGTGGTGGTGAGGGGGGGAGAATCAACAGTCCCTCCCCCATCAGCTCCTTCCTTCCTGTTGACCACCTGACGGGAGGTGGGGAGTCCATGTAGTGCATCTTTCACCTTctgacttaaaaacaaaaaaaaaagacaaaaaaaaaaaatacaaacccGTGACCTCAATGTGGAAATAGTTAATCCTAATCATATgaccatatatatattatatatgaaaaaaaaaaaatcaaatggcaCTAGTTAGACTTTCTTCACttacaataagaaaaaaaaaaacaatgtgggGTCACCCTGTGGAAACAAGttacgttttttttctgcacatatGTCCACTTTGTTTTAGCCCAAAACATATCAGTTTGAATACTTGAATTATGCAGGCCAATTCTATAATGTGAAAGGATGTATTTACACTTCCAGGTAGTGCTCttcatacagaaaaaaaagcttcagtTGAGCTCATCTGTTTATTCATCATGTTTATTTGAATTCcagttctttttgttttgtttttattatttgcattttgtttgcTGACAATGTTGGAGTTTGAGCTTTTTTAACTTTGCACTGAATGTGGTTTTTCTCAGTATAATCTGCAATATGGAGGGAGCCGACAGTTCCAGTGTAGTTGTTTACTCAAGGATGTTCTTAAAGTGTGCGCTCTACTATGCCTTGATGTACGCCTACCTTATTGTGGTATTGTGGAGTTCGAGATCAAGATATAGATGCTGACTTAGGATTATTTGATGATATTACAGAAATAAGTATTGCaccaattttgttttaaaactaaagaATTTAGCTCTGCAGTCTAAAAAACTGTAGCCACAGCTGTGACTTGCAAACCCGACCTGCAAGCCAGGGGGAACAGCACTTTCAAAATAGGCTTTCAATTTTGTTTTGGAGGCATCACATTGTGCCCTCTTGTTTACAAAACTTTTTGAGGGGGAAAGTATGGTCAttcttccttttattttaaatggagaaaaaaaaagagaaaaaaaatgcataaagaatcgaagaaaaataatcttacaaaaatgataaaaaacacaaaaaaatacaaaaaaaaatacaaaaaagaagaaaaaaaattacaaaaaaattcttGAGGATGAAGACGAAGCTTTTTATCTCTGGGAATACTGATCAGTGTTTGGCCATGTCATTGGTTATTTTATCTATTCCTCTTGTCTGCTAAATAACCAGCATGGTTCTCAGGAAATATAGCCAGTTTTCCCCCCATAGAAACTCCTTGTAGGAAATCCAACTTTTAGCACTGAAACTACTTATAGCTCTGTAAGTTTTTCTCTGCCAAATAACTGCTTTAAGCTGGAGACATTCTACATACTGCTTTTCGAATATGCTGTCTTTTTATTAATGAGTGGATATGGTTTGCTGAATCACTATCTAGTCCTTCTTCCCTTTTTCCCACTGAGTGGCTCAATGTTTTTCGCTTTGTGACTGTCGAAGTAACTGTCAAATGTCataagaaaaagcagaaatctgTAACTATGCATACTGTAGCCAGTGACTCGGCCTACAGAATCGCTTTTTCTTTGTCTGAAgtaatgttttgtatgtttcagtAATTTGCGTATACATcgtttcatatatatacatattatatataaatatatatatatatatatatatatacacatcgcCAGAGCTGGTGTTAAAGAAAATCTTGTTTGgttattttaacagtgcaaaagTCGTCCACATTTCATTGCCTTGATTCAAATTGTGTCCGAAGATGCaacaagtcaagtggcttttaacTGTTTACAAATAGAAAATGATTGTAATGTGTACAGTTTGGTTGTGTTAATCTGAAGTTccttacaatattaataaatcaaatgttttggcTGCTCATTaccattttactttaatttaattttttttctttgttcgttttttttctttttgtttttctcccccTTCCCTCCCCTTTTTTCCCCTTCCTCAAAGCTGGTTTGTCATTGAAAATGGCTTGCCTCTGTACTTGTGGCCAAGGAAGGCTGGATTAGAGGTGAATGTAATCTATTGCTGGTAGTTAAAATAATGTGCGTAGATTTGCagacttatttacattttatcgtACTATATTTTAGGTGCACAATTTTTGAGACGCTTCAAGagcgagagggagagaaagatgTCAGCATTAGGCTAAGCCATGGACCTTAATATTTGTTtaagctgtttgtttgtttttctcctccattttgttttatttgagaaGTAGAACTTGCGTGGCGTGTTAACTTATCCATATTTAATGACTCTTCGTACAAAACCCTGAGTATTATCCTCACTTTATGGTTGCGTGCCAGTATTGAACCATTTTAAGTAACTGCTTTACCAAATATACTTCAATCAAAGGATTTGTTTACTTAATTCCAGACCTGGCTTATCTTTGTTTGTCGGACATATTTTAAGTGGAACATTGGAGAGAAACTACATAACAACAAAAGCCGAAAATTACTTTTTGGAATTGCACTTGGTGTACATAACTAGAAAAGCTtgtactgtatttgtgtttttgtttttttttccggaGGCAGATTGTAGCTTTTGGAGACTGGATGGCATGAACAGAGGAGGACTTTGCcttgtgtttgtcttttattCTTCGTGTACATTGACTAGACTCTGAAAGCGTGTGTTCGTGCCTGCATGCTCGAGTGGTCTGCTCCATTCCTGTGCATCAGGAGCCCAAGTATTCTCCTCTTGTTTAGGGGGCGTATAACTGCAGGTATCGCCGATGGTTTTGCTGTGACTTTGTTTACTCCCTCGATGTGGATCGCTCAATCTTTTGTGCTTTAGTTACATGTTCGTATGCGTCCGGGGTAGCATTAGTCCTTTCTGGGAGTGCTATGTTGAGCTTTACCAATGGTTATGAATGGGTCTCGGCAAACGTGCTAGTTTCCCTGTTCTTTGtggctttttgctttttttggaaGCGTTGGGAAAAGCCATTGGCACCCAGTTTATTTCcacttttaatttagttttattgctttttttttttttttttttccctctctgtcCCCCGTTTTCCTCtgaattttgttttatgtatgtgCAGCTTTTTGGTGTTAGACAGAACTGTCATGCTGAGACATTTTGATAATTCACTGTCATGCCAAATTATCAAACAGGGGCAGGAAAGGGATTCGTTCTTTTGTAAAAGCTGGACAATGTATATGCTTCAAATGTCACTTGCAAAATGGATGTTTTGAGGATATTCATGAGCAATGTACAATCCCCATTTTTATAGCCAGGTTGAACGTAGAGGAAACGGGGAAGTGACTTGGCCTGACATTCTACTTTTGtactgaaaatgtcatttcttttcTGATTTATCCTGTGAGCAAATATACCCTTGTCTTTTAAATGGTTCCTACTGTTGAACAATGTGCTAAGGCAATTGACTTAAACTGTGAGTATTGCTGTCATGTCATTATAAACCCGAAAAGCTTTAGTAAAACCAGCACAAGAAACGGATGAACGAAGAGTTTAAATCAAAACTTCCACCATGGGGAAATTCTAAGAGAGTCTATGCAGTGTAGGGTGAGGCTTCCATGTCTGTGTCTTTGCTTAATGAAATCCTGCCTGCGGTTGCGGGGAGGAGGGGGGGGGGGTTAAAAATACGATTCCTGTAACGTGCCATGATTGAaattttctttaactttttCATCACAAGAAACTGGCCAGTTGTAGCAAATGGAGGGTTGCATTAACGTTTTCTTTTTCACAGCGCTCCTCACAGAACGGGCTGTGGAATAGCAAATGATCAGCTCCAACATTTCTTCTAGTGGTCTGTCGAGAAATAGTTTGCTCACATGTAACCTATATGCACACTGCTTTGGTAGACTGTTtgaaaattaatagaaataaacatcAATAAGATAACTTAAATGAGCAGGAAGTTCTTTTCAGCGTCTTCCTGGGGTCATCTTAGAATTTTAACTTGGGGAACTGCACTTTTTGAAGGACAATCCTTATTTGTATTGGTAACAATTGACACAAGGTTTAGTCTAGTAATACATGGTAGATACTCAAATGTGTAGTGATGAATGTTTCCtgtaatgctgttttattttattttttttcttcttctctttgttGCTTGGTTTTCAATTTTAGTACCCTTAAGTGCATATGTAACGAGGTAGTTGAGGTAATCGAGTAGTTTTTAGGTCTTTTGTTGGCTGTACTTGTAGACTGATAAATAACTGTTTGTAAAGTCCTGATCTTGATATCAGAATACAAAGCTGTATAACTTGGGTACAACCCGCAATAAAGCCTAACAGTGATATGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29615 lncRNA upstream 32496 13698574 ~ 13705402 (+) False rbbp6
TU29485 lncRNA upstream 294320 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 295749 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 298572 13435894 ~ 13439326 (+) True G19788
XR_006250477.1 lncRNA upstream 325980 13408320 ~ 13411918 (+) True LOC122341620
TU29624 lncRNA downstream 23461 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 50981 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 149554 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 176244 13940616 ~ 13943491 (+) True G19963
TU29750 lncRNA downstream 232098 13996470 ~ 13997081 (+) False slc16a3a
XM_043235967.1 mRNA upstream 27033 13698537 ~ 13710865 (+) True rbbp6
XM_043235968.1 mRNA upstream 27033 13698537 ~ 13710865 (+) False rbbp6
XM_043235988.1 mRNA upstream 54402 13649294 ~ 13683496 (+) True cacng3b
XM_043233748.1 mRNA upstream 104371 13532570 ~ 13633527 (+) False prkcbb
XM_043233953.1 mRNA downstream 2819 13767191 ~ 13769945 (+) True rpusd1
XM_043233954.1 mRNA downstream 2819 13767191 ~ 13769945 (+) False rpusd1
XM_043235797.1 mRNA downstream 32481 13796853 ~ 13808182 (+) True traf7
XM_043235798.1 mRNA downstream 32481 13796853 ~ 13808182 (+) False traf7
XM_043233930.1 mRNA downstream 124568 13888940 ~ 13902589 (+) True crlf3
TU29613 other upstream 35545 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 749985 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 849837 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1209095 12519837 ~ 12528803 (+) False gtpbp1
TU28787 other upstream 1224177 12511926 ~ 12513721 (+) False G19326
unassigned_transcript_286 other downstream 149251 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 285118 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 354095 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 491118 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 770807 14535179 ~ 14615408 (+) True G20148

Expression Profile