RNA id: XM_043233957.1


Basic Information

Item Value
RNA id XM_043233957.1
length 700
RNA type mRNA
GC content 0.50
exon number 5
gene id ndufab1b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13765232 ~ 13767068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCCGGTTTGTCGAGGTGAATTGTGGGATAGAAAGTCACAGACATGGCGTCTCGTGCGCTTGCGAGCTGTGTGCGCTCGGTCGCTCGCGCCGCTGCAAGGTTAAATCACGGCAGCGCGCCCCTCGTCTCCAGACAGCGACCTCTCTCAGTCCTGTCGTGCAGCCAGCGGACGAGGTGGACTCAGCCGGTGCGGATTTCAGGCCCGTCTGTTCTTCAGCGTCGGCACTACGGGGATCTTCCACCCCTCACTTTAGGGAGCATCGAAGACCGTGTCATGTACGTCCTCAAACTGTATGACAAGATCAATCCAGAGAAGTTGCAAACAGTGTCTCACTTCATGAAAGATCTGGGGCTGGACAGTTTGGACCAGGTGGAGATTATAATGGCTATGGAAGATGAGTTTGGATTTGAGATCCCAGATGCAGAGGCAGAGAAGCTTATGACTCCTGCGGAGATCGTACAGTTCATTGCAGATAAAAAAGACGTGCATGAATAGAGGTACGGAGGATCGACTCTGTAGTAAACGATATGGATGTGGATCGGCTGCATCCACACGGTGTCCGGTTTCTGTCATACCATTTTCTCCTGTCTCTTGCTTATGGAGTCAACTGCCTTGTTGTGTACTGTTGTATTTAATGAAAGTGTCACTATAAAGTCTTGGGAACTCGAGCTGAAAATAAAGCCAAGACTAAATGTAA

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process

KEGG:

id description
K03955 NDUFAB1; NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29594 lncRNA downstream 131447 13633559 ~ 13633785 (-) True G19872
TU29519 lncRNA downstream 407443 13357579 ~ 13357789 (-) True G19811
TU29406 lncRNA downstream 635624 13125521 ~ 13129608 (-) True G19726
TU29374 lncRNA downstream 674080 13090671 ~ 13091152 (-) True G19703
XR_006248461.1 lncRNA downstream 692404 13072560 ~ 13072828 (-) True LOC122332187
TU29639 lncRNA upstream 18945 13786009 ~ 13792602 (-) True gng13b
TU29640 lncRNA upstream 18945 13786009 ~ 13792233 (-) False gng13b
TU29698 lncRNA upstream 130567 13897631 ~ 13898932 (-) True G19947
XR_006250534.1 lncRNA upstream 150636 13917700 ~ 13930277 (-) True LOC122342150
TU29815 lncRNA upstream 292517 14059581 ~ 14060492 (-) True G20029
XM_043235989.1 mRNA downstream 87137 13675506 ~ 13678095 (-) True LOC122342172
XM_043235287.1 mRNA downstream 304417 13454266 ~ 13460815 (-) True psmd11a
XM_043225647.1 mRNA downstream 311745 13435933 ~ 13453487 (-) True nsfa
XM_043235105.1 mRNA downstream 356259 13398956 ~ 13408973 (-) False thraa
XM_043233955.1 mRNA upstream 3587 13770651 ~ 13772390 (-) True dctn5
XM_043228881.1 mRNA upstream 19287 13786351 ~ 13792337 (-) False gng13b
XM_043235796.1 mRNA upstream 41243 13808307 ~ 13884781 (-) False caskin1
XM_043235784.1 mRNA upstream 41243 13808307 ~ 13884781 (-) False caskin1
XM_043235788.1 mRNA upstream 41243 13808307 ~ 13884780 (-) False caskin1
unassigned_transcript_285 other downstream 664588 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 672386 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 677965 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 680266 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_281 other downstream 684611 13080070 ~ 13080621 (-) True LOC122332138
TU29676 other upstream 38304 13805368 ~ 13805978 (-) True G19933
TU30091 other upstream 668086 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 669151 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 669151 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 669151 14436215 ~ 14439541 (-) False mlx

Expression Profile