RNA id: XM_043233960.1


Basic Information

Item Value
RNA id XM_043233960.1
length 6351
RNA type mRNA
GC content 0.42
exon number 20
gene id ciita
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18426360 ~ 18437883 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTTATATTGATGCATGATATCATTGTCCTGGCAGCAAATCTccagtacgttttttttttttttataatatgtatttttcgtgtgtattatattatgaaGTTGTAAATGTGCTCATAGTCTGCGATttaaaatttacttaaaatattaataaagcattaaaatggaTATCACTTTCTCATGCATTTCTCATCTCACAGAGAGCTGCACATTATTCATGATGTTCTTTCTCACAGACAGTTATACTGCGTATGATGGGCCCTGTTTCATTGACATCTTACTGCAGTCTCAGCACAGATTACAGACTTCAGTGCCAGTTCCGCCAACACAAAAACTAGATGCAATGCATCAAATGTCTTAGttatgaaaccatttttctataaataattatttaaagaaaattggTTCCACTGTACTCATGCCAACTGAAATTTAGCAATTCATCAATCGCTCATCAGTAGATcttcagcagtgaatgggtgccgtcagaacaagagtttaaataactaataaatacatcACGGTTGGCTCAACTAATGGCACAGTTTCATAGTCGGCGTGGCCTAAGACACACTACAAGATAATTGGGCAGATTTCGGGACGATTTCTCCCCTTTCGACCATCCTAGCTAATGTCCCGATTATCTTGGTGGTTTTAAAGATTATCTTATAAGATTTTTCCGTGGTGTGATGTGTTTTAAGTGACTGAATCCGCTCAGAAGAACGTCGGAGGCGCCTGATCgagaaacacaaatatttaacatgttgATCTGAAATCCTGTTgtgtggtggtggtggggggaCCTCGAAGACGCATACGATCTAAAAATGATCGTGAAACGAAATAATATCCAATCGGAAAGCGAAGTGACAGAAGACTGTAGCATAACAAGCGCGGTCAGGGCGAAGCACAAAAGGACCGGGACGGCGGAGATTAAGGGTgtacacaaaatgaaaatctgtgtgCGGTTTGCTGTCTTTGTCACACTGCGGCACGCCGCACGCTGTAGGGTCAAAATGGTTGAAACGGAGACTTTTTTTGTCCTCGTCTTTGTGGTCTCTCGCGTTTTGTAGATCTTAACcgatttttaaagtatttaagtGCACCTCTCTGTGAACCCAGGGGATGAGTTCATAAGTAATCCGTGTGATTTGAGTCAGTCAGTATATTTCCAGTGAAGTGAACTCATCGAGGCGTTTGAACAGTAAGTCCAGTCTCCATAATAACACATCCATTGAAAGGTTCCTCCTTTACTCCACCTCCATATTTGTTTAGGACCTTGGAAACTATGCTCGATCCGTGCATGTTTTTCTCTTGGATCAGATGAGATGGCTTTTTCACTGGAGAGGCAGTGTTGCTTCTGGctttatttttaggtaaactGTTCCTTTTAACCCTCTGCACAAACTGTAACATCACTGCAACGGCACTGCAGCAATACCAGGCCAGCAGTGAACCTCTCAAAACTACGTGTAGAACTGTCCACATTAGCTGCTCTGTTGGCGCAGCTCACAAACCACAAGTCCGTAACACCGGCTAACAGGATGCACCTGTAATCAGATCTCTCACTCAGATCAGAGTTGCTGTCTAAGCACGCTGCGTGTCTTGAAGGTTTTGTTTACCTTCTGTGCGAACTGCTGATGAAAAAGCAGTGTTGGGGTTCAATCAAAAATGTGCCACTAAAGCTTGTAGTGGTAGACGCCCTTCCTGGTTTCTGTGGGAAATTAGCGGAAATGTAATGCAATGACACCAGCAAGGCAAGACGGTTTATGGCATTGGCtgttaatagaaaaaaaagcaaatctcATACCAGTCATACAGTCTATGGTACGTGCGCAACAAGGAGGGTGGcatcagagaaaaaaagaagttttttttttactttctttcttcctgGCTGGTTGGTAACCACTTTACAAAAGCATAAATGTATGCGTTACATAAAACCagtctgtctttaaaaaaaaatatggcacAATAGACAATGGAAAATACCTGCCACTCCTGGGTAGTGCATTTCCGCGTAGCAGTGCTAAACCACTGAACATTTAGGGGCATCATGAAcccattttctttgtttttttttcttttgccagCTTCTTAAACAATGTCTtgttagattagattagattagattataaTTTAGCACTACATGAATCTATTGTAGCATTGAAGATCTGTttgttactgtaaaatgtagGCTGTTGACGTTAACTCAAACTAATAACTAAAAACGGAAGAAtggaatgggaaaaaaataacaaaaaatggaaGGTCGCATTATGGCAATTCagtaaatatgaacatttttaatttcttaaaacattttttatttacagtatgttaCTGTACGAATACATGTATGCTCTTTCAAATTTGAAATAGCCTGCTTAATAAGATATTATATGCTTTATTATATAAGATAgacacaaataataacaaaaataataataaaactaaataaacaattataatattacatgtaCTGTGTAAATAGCCTATGCCGGTTCGTTATCTCCATCATcccaaaaaatgctaaattataaagATTGCATATCCTTTGCTGGAGAACAGATTTGCTAAATGCCCGAGGCTTGTAGAGTTAGGCTCCTGCAAAGCCAAACCAACTCCCCTCTCATACTGAAAGTAAAAGTAAGGTGTAGCCAGTTTGGTTTTTGCCAGACAATGCCAGAGCCCGTGTAATCTGAGGACACATCGAGCgcttattatacatttctttttcttttctttttttttgctgcacaaCTTTAATGTGATGGATTAACAGTTCTACAGTAAACATGGAATATCTGCGTAAAAAAGATGCTGAATCGCAAAATATCGTCTCAGACCCAATGGCTGAACTCTTACCTGataatgTCATCTTAAAATATCTCGAGTCACTTGAGTCCATTGAAGAGGATTTCGATCCCACCATCCTAGATAACTTCTCAGGCGACATAGACATAATCTGCACGCCAAAACCAGAAAATGCTACTTTCCAAAATGAAGTGCCAGTCAAAAAAGCAAAGgTTGTTGCGGTCAACAGAAAACCTCACAGAAAGCACAACAAAAAAGCAACAAAGTGCCCTGAAAGTCCCCCAAGCGGAAAGACGCCCACTATCACCCCTGAGAGCTTCCATTTGAGCACAACCCAATTTCAGCATGTATTACGTATTCCCTTCAGTCCCCCTCTTCTGCCCCCTAGTGgaGGTTCTCCACTACAAATCATCCAGACCATCGGCCCTTATACGCCACCTCTATTTGGCACTGTGGTTCCAACCGGACCTGCATACGTGATCGTCTCGCCCCAGTGTGTGAGTCCAGGCGCTCAGATAATTCCTCTTTCACCTGCCATTGGCACCGTGGCCCCACCAGAACTCACTGGTTCTGTACTTCCTGTTGGCTCATCCTCAGACAGCGCATGCCAGGGTTCACCAACAGTGGACCCACTCTCCCCTACAAAAGACCTACAAAAAATCATTTCCACATCtccaaaaactgaaaagaaaatccGCCCAGAGGCACCAGAATGCGTTAAGGACTACATACATCAGACAAAATGCTACATGAGAGATGTCTGCTGCGCAATGCGTGGGGGAATGGGAATGGATTCACACTACGTAGATACGCATCTGGTCCAGAGGAAACTCCTTATCAAATCCGGCAAGAATGCAAACAAGTGTCTGGAGAAAGAGCTGGTTGTCCTTAGTGATTCAGAGCGAAAGAAAGCAAAGCTGGACAGAAGCCAATTGTTTCATTACAATGACTCCAAACCGAAACAATCAATCGCTCTTCTTGGAAAAGCCGGAGCGGGGAAAACCACGTTCGTTCAGCGTTTATGCTTGGACTGGGCGAGCGGCAGTCTGTCtcaatttcagtttgtttttttgctaaacTGTAAAACTTTAGACCTCACACAATCAAACTACAGCTTGAAAGGCTTACTGTTGGACTTGTCTATGTCTCCTCGCTGTGATGACCCTGAATCTGTGTTCAAACACATTCTTTCCTGCCCTGATGAAGTTCTCATTGTCTTTGACAGCTTTGATCACATTAAAGACTTGGAGGGGCTTCTTCAGTCCCCTGCTAAAtcgcacacaaacactaaatacACAATCAGACAGCTATTTTCTGGTTTGTTCCAAAAGGAAATCCTCCCGGGCTGCACGCTTCTCATTGCCACGAGGCCTAAAGACGTTTTAAATCAGGTGCTGCGAAAAATGGACAGCCTTTTGGAGCTTTCTGGCTTCTCTCCTGAAGACATTGAGTTGTATACATCTAAATATTTCGGAGACACTTCCCTCCAAGAAAGTGCACTAAAACAGATTAAGAGTGATGGATACATATTCAGTTTATGCTCCAACCCGCTGCTTTGTCGGACTACCTGCTTCCTGCTCGAGCACCAAGAAAGCTGTGATGATTTGCCTTCAACCCTCACGGATTTGTACCAAAGAGCGACATCAAGGCATCTGCAGCTAGCTAGCCTTGAAAACGGCGCTTtgtgtaaaaacagaaaacagccgGACATCCCACAGTTATGCAAAATGGCATGGGAGGGATTCAAGAATCATGACACGTGTGTAAACCCTGCCAGTTCTACAGAGCTGCTGGACTGCGCCCTTAAAAGTGGCATACTTGCATCCTACAAAACATCTGAGGGTCAGGAAAACCACTTTGTGGACCTTTTCTCTCAGAACCTCCTGAGCGCTGTGCACCTGGTGCAGTCTAAACAGGTGAACGAAAAGATGGTGGTGGCAAACAGCGTAGTCCATCACAAGAAACGAAAGGTTCAGGGAGAGTCGCAGGACGTGTTGCAGAGGTTTGTCACGGGGCTGGTCTTCCAAAAGCCTCCTGATGGAATCAGCATCCTGGACAGCAGTGTCAACATAAAAGCCAAAAGAAAGGCCGTTGAAACCCATCTGGAGAGCATGAAGCCCAATGATTTGGTGCCTGCCAGGTTACTAGAACTGTTTCATTGTGTTTACGAGACCAGCAGCGCCAAATTTGCCAAACTGCTTTTGAAGAACCTGCCTGAAAACCTGTCGTTCTATGGGACGCAGCTTTGCCCATCGGACGTGTATGTTATCTGTCATCTCCTTCAATATGCCAGCGCGTTGAAGCGGACCTTCTCCATTAACCTGCAAGACACGTGCATTCCCATCAGTGGCCTGAAAGAGCTTGTGGGACTTAAATGCATCAAAGAATTCTGGGCTCATACAGCAGACACCATTGGCTTGTGGGAGGACTTGGATCAAAGCAACGATGAACTGAACCTGAAAAGCGCCATTGAGAAATTCACTTTGCACCCATTCAAGGCAACCGAAGCGTATCACATAGACAGCCTGCCTGTCCTTGTCCAAattcacagagagaaaaagctACCAATGAGTGAATTTGTGTCTGCACTGGATGAAGGTGTGCCAGCCCTCCGGCATCTTCAGAGACTCGAATATGAGCTTGGAGTACAGAACGGTCCTGAACTTTTCCCTAAACTCGTAGAGGTCCTGCCTTCTCTGCAGTCCCTCCAGCATCTAGAcCTTGAGAAAAACCAAATAGGAGACTCTGGAGCCGAGAAGCTGGCTAgcgttttacattttttgaaatgtcTGAAATTGCTAAATCTGTCTCAAAACCTCATTGGAGATGCAGGAGTGGAGAAACTAGCTAAAGCTTTTGCATCAGTCCCTTCTCTACAGAGCCTCAGCCTTTATGGAAATGCAATTGCTGACACTGGAGCTGAACATCTGGCCTTAGTTTTACCAGACATGAATTTCCTGCAGGACCTGAACGTAGCTTTCAACAAGTTCACAGACCTTGGAGCTACAAAGCTCAGTGCTGCTCTGAAAAACTGCACAGGAATGAAGTCTCTGGAGCTGTGGAACGACTGCATTCCATATGGAGTTTTTGAACACCTCCGACTTCAAGATCCTCGGATACGATCACTTTGACACGCACATTTTAAAACGGcaaagttttgttgtttttacaaaagCATAATTCACAATTTGGCAACCAGGACACTAAACTGCTTTAGACTTTCTCATTGAATGACTGATCAACTGACTTGCACTTTCTGACACTTTTGTGAATATACTCTTCCTCAGcactaaaagtattttttactgtatttttttttttaaaataagctcAAATGCTCTGAGCCTGCTTTCCTGATTGTGACAGTTACAAATGTCAAATACATCAAACGTTTAGCTGCTTCTATAATTCATTGTCATCTGGATAAATTGTAAGTTAATACTGCTGCTTTGATTATCTGTTCAGATGCAGTTTTCAGgggctgaaaaaataaaatacgcacaataaaattaaacacacCTCTCGCCTCATC

Function

GO: NA

KEGG:

id description
K08060 CIITA; MHC class II transactivator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 268563 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 307683 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 384488 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 136804 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 138130 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 214478 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 264701 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 390803 18828686 ~ 18829253 (+) False LOC122341799
XM_043233962.1 mRNA upstream 2033 18405966 ~ 18425076 (+) False nubp1
XM_043233963.1 mRNA upstream 2033 18405989 ~ 18425076 (+) False nubp1
XM_043235082.1 mRNA upstream 48627 18374176 ~ 18378482 (+) False atf7ip2
XM_043231443.1 mRNA downstream 5488 18443371 ~ 18487548 (+) True clec16a
XM_043231495.1 mRNA downstream 5488 18443371 ~ 18487548 (+) False clec16a
XM_043231462.1 mRNA downstream 5488 18443371 ~ 18487548 (+) False clec16a
XM_043231473.1 mRNA downstream 5488 18443371 ~ 18487548 (+) False clec16a
XM_043231452.1 mRNA downstream 5488 18443371 ~ 18487548 (+) False clec16a
XR_006250035.1 other upstream 2033 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 325177 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 351535 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 520466 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 703686 17719182 ~ 17723423 (+) True G20950
TU31399 other downstream 5507 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 68247 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 244471 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 288078 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 288078 18725961 ~ 18729368 (+) False G21182

Expression Profile