RNA id: XM_043233962.1


Basic Information

Item Value
RNA id XM_043233962.1
length 1578
RNA type mRNA
GC content 0.45
exon number 11
gene id nubp1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18405966 ~ 18425076 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCAGTGTACAAGTGACTGTACGGAACCTTCGTCGCACAGCATTATCCGGGGAAATTGATTGTCGTTGCACCGGTGTCGGGAAGTGCGCATGTTTTGAAAGATGGCGGACGTTCCTAACGATGCACCAGAACACTGTCCCGGCACAAGCAGTGACCAGGCTGGTAAATCATCAGCATGTCAAGGATGCCCAAACCAAAACATATGTGCTTCTGGTGCTGCCAAAGCTCCTGATCCAGCCATAGAGGAAATCAGGCAGAAACTGAGCTCTGTAAAGCACAAGATTCTGGTTTTGTCTGGAAAAGGGGGTGTTGGGAAGAGCACGTTCAGTGCACATTTGTCTCATGCATTGGCTAGTGATGACTCTAAAGAGGTTGCACTGCTAGATGTGGACATCTGTGGACCATCTATACCAAAAATAATGGGGTTAGAGGGGGAGCAGGTTCATCAGAGTGGCTCAGGCTGGTCTCCAGTGTATGTTGAGGACAACTTAGCCGTCATGTCCATCGGCTTCCTGCTCAGCAGTCCAGATGATGCTGTTATCTGGAGAGGCCCCAAAAAGAACGGCATGATAAAGCAGTTTCTGAGGGATGTGGACTGGGGAGAAGTGGACTATCTGGTCGTAGACACGCCTCCAGGAACGTCTGACGAGCATTTGTCTATCGTGCAGTATCTCAGCGGCGCTGGCATCGACGGAGCCGTCATCATCACCACCCCGCAGGAAGTATCTTTGCAGGACGTGAGAAAAGAGATCCGATTCTGTAAAAAGGTCAAAATACCCATCATAGGTGTGATTGAAAACATGAGTGGCTTTGTTTGTCCCAAATGCAAGAATACATCACAGATATTTCCTCCGACCACAGGAGGAGCACAGAGAATGTGTGAAGATCTACATCTCCCTCTTTTGGGAAGAATCCCCTTGGATCCACGGATAGGGAAAAGCTGTGACGAGGGAAGGTCTTTCCTGAATGAAGTTCCAGACTCTCCCGCTGCAGTGGCCTATCAGAATATTTTCCAGAaaaTCAGGGATTACTGTTCTTCCCATTCTGCACTGGATGATCCTTGTTGACGCTGAAAAGCACATCAGATCTTTGTCCAGGCAGCTCGGGCGTCCGATGTGTTCATAGAGCGGTGTCATGTGATCAATCAGTCACCATGACTTTTGCTTTCTGCTCACCACACCTGCTCACCTTTATAAACTCGTCACAGGGCAAacgtaaaaaaaagtctgatatACCTGGGCTCCCTTCAAATCGTCGAgggtgaaaatatatattttttgagatttgaaaaatagtttgttacaatatatcaaaaaatgaattcatgttATGCGTCAGACGTTAGAGATCGCAATCCAGGTGATGAATATAAACGCGTTCGTTGTACTCGATGAAAGTGaaaccaaaatgtatttatcactATAATGACAATCGACATGTTTCAGCAGAGCAGAAGAAATGATGTTTATTATCGAAAAAGGCAATGTGCACCATACATTGGCTTCTCGTTAATGAGATGTTATGGCTTGTAATGTTTAATCTTTGCGAATAAATCTCTTACGATAACAATGTCTAAA

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 247420 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 286540 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 363345 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 149611 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 150937 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 227285 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 277508 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 403610 18828686 ~ 18829253 (+) False LOC122341799
XM_043235078.1 mRNA upstream 27484 18372757 ~ 18378482 (+) False atf7ip2
XM_043235080.1 mRNA upstream 27484 18372757 ~ 18378482 (+) False atf7ip2
XM_043235084.1 mRNA upstream 27484 18372757 ~ 18378482 (+) False atf7ip2
XM_043235079.1 mRNA upstream 27484 18372882 ~ 18378482 (+) True atf7ip2
XM_043235082.1 mRNA upstream 27484 18374176 ~ 18378482 (+) False atf7ip2
XM_043233959.1 mRNA downstream 1284 18426360 ~ 18437883 (+) False ciita
XM_043233960.1 mRNA downstream 2033 18427109 ~ 18437883 (+) True ciita
XM_043233961.1 mRNA downstream 5797 18430873 ~ 18437883 (+) False ciita
XM_043231443.1 mRNA downstream 18295 18443371 ~ 18487548 (+) True clec16a
XM_043231495.1 mRNA downstream 18295 18443371 ~ 18487548 (+) False clec16a
TU31277 other upstream 304034 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 330392 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 499323 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 682543 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 1210082 17163701 ~ 17195884 (+) False LOC122341316
TU31399 other downstream 18314 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 81054 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 257278 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 300885 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 300885 18725961 ~ 18729368 (+) False G21182

Expression Profile