RNA id: XM_043233980.1


Basic Information

Item Value
RNA id XM_043233980.1
length 4876
RNA type mRNA
GC content 0.47
exon number 23
gene id llgl1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15462294 ~ 15491956 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcataaacacaGAGCTGAAAACTTGCACGGCTTGAGGAGTGGATACAAAAGAAACTGGAGCTTGCATGAAGGATCACATTGTTTCTCTGCACCGATTCAACGCCTAACGGAATTTATATCAATCTGAGACGGCGCGGGCTTTGATTTTTCTCTGATTCGGCTTCAGGATGATGAAGTTTAGGTTCAGACGGCAGGGAAACGACCCTCATCGTGAGAAAATCAAACAAGATCTGTTTGCATTCAATAAGACAGTTGAACATGGATTCCCTAACCAGCCAAGTGCTTTGGCCTATGATCCCAAACTGCAGCTCATGGCCATTGGAACTAAATCAGGGGCCATCAAAATATATGGGGCTCCTGGGGTGGAGATGACTGGACTTCATAAAGACACTGCTGCTGTCACTCAGATACACTTTCTCTATGGACAGggCAGGATACTTTCTTTGTTGGATGATAACACCATTCACCTATGGGAGATTGTGCAGAGAGAAAACCGATCACATTTGGTGGAGGTTCACAGCTTCAACCTTCCTGGCAGGCCAGGCATCGAGAGCACCAGTGCGACACGTGTGACCGTCATGCTGTTGAAGCTGAGCTGTGATCTTCTTGCTCTGGGGACTGAAGGTGGCGGGGTGCACTTTCTGGAGCTGCCCAGCCTCACTTTGCTGAACAAGTCGCTGTTCCAGGATGAGATCATGCAGAGTGTTCCAGAGGAGTACAAGTGTGGAAAATCATTGGGGCCCGTGGAGTCCCTGCAGGAACATCCTCAAGACCCTGATAAAATCCTCATTGGTTACAGCAGAGGTCTGGTTGTACTCTGGGACCTCAACAGTCGGCATGTAGACAACCTCTTCCTGGGAAAACAGCAGCTGGAGAGTTTGGTCTGGGAACGGTCCGGGAACAGCTTTGTTAGTTCCCATAGTGATGGAGGATACATGGTGTGGGCTGTCAGCAGCAGCCTTCCCTGCACTCATGACCCCATCTCATCCACCATACCATATGGCCCCTTTCCCTGCAAAGCCGTGAACAAGATCCTGTGGAGAACAACAAAATCCGGAGCTCCTCTAGTGCTGTTCAGTGGCGGGATGCCCAGAGCCAGCTATGGAGACCGACACTGCTTGACCATCCTCCAGGACAGCAGCCACGTCACCCTTGATTTCACCTCGCGTGTCATAGACTTCTTCACCATTCACTGCACAGACAAAGATAAGGAATTTGATGAGCCGTCAGCGCTTGTGGTTCTTTTGGAAGAGGAGCTAGTAGTGATCGATCTTCAGATGGCTGGCTGGCCCACTGTCCCTGCTCCCTATCTGGCTCCTCTGCACTCCTCTGCCATCACCTGTTCATGTCACATCTCAAATGTGCCTCCCAAACTATGGGATAGAGTGATCAGTGCGGGCCAGCAGCAGAGTCCTCTGCAGAACTATGAGAACTGGCCAATATGTGGAGGGAAAAACTTAGCACCTGATCCCAAGCAGAAGGAACTGCTTTTAACTGGTCACGAGGATGGTACGGTGCGTTTCTGGGATGCGTCAGGAGTGTCGCTCAAACCGCTGTACAAACTGAGCACAGCCAACATCTTTCAGACAGACTGCGACCACAACGACAGCCTGACGCAGGCCGGGGAGGAGGAATGGCCTCCTTTCAGAAAGGTGGGCtgttttgacccatacagtgatGATCCCAGACTAGGAATCCAGAAGATCAGCCTCTGTAAATACAGCGGAAAACTGGTGGTGGCTGGAACTGCTGGACAAGTTATAGTTATGGTTCTTAGCGATGAGAAGTCGGATCACATGATTGACGTGGCCACGGTGGACCTGCTCCAGGACCGAGAGGGTTTCACGTGGAAGGGTCATGACCGGCTGCCTCCAAAGAGCGGCTCAGTAGTGTTTGCTGCTGGATTCCAGCCGGTTGTCCTGGTGCAGTGCATGCCCCCCGCAGCTGTTACCGCGGTAACCCTGCACGCAGAGTGGAACCTCATCGCTTTTGGCACCAGTCATGGCTTTGGCCTCTTTGACTACCATCGGCGAAGTCCAGTGCTGGCGAGGTGCACTCTGCACCCCAATGACTCTCTGGCTATGGAGGGCCCGCTTTCTCGAGTGAAGTCTCTGAAGAAATCCCTGCGTCAGTCCTTCAGGAGGATCCGGAAGAGCAGAGTCTCAGGAAAGAAACGTGCTGTTGTCAGTAGTCCCACCAGTAAAGTGCAGGAGGCTAACGCTCAGCTGGCGGAGCACGATGCTGAGGTGACACCGGTGCAGAGACGGATTGAACCCCGCTCTGCAGACGACTCTCTGTCTGGAGTCGTGCGCTGCCTCTGCTTCGCCGACACTTTCCTCAGAGATGGAACGCATCACGGACCTACAATGTGGGCCGGCACGAACTCTGGCTCGGTGTACGCATACGCTCTAGACGTCCCCTCGCAGGAGAAGTTCTCTGAGCCAAGTGTGGAGGCCCTGCTGGGAAAGGAGATCCAGCTCATGCACAGAGCTCCGGTGGTGTCCATCGCTGTGCTGGATGGCCGAGGGAACCCTCTGCCGGAGCCCTACGAAGTCTCCAGAGATCTGGCCAAAGCCCCAGACATGCAGGGCAGCCACTCGGTTCTCATTGCTTCTGAGGAGCAGTTTAAGGTTTTCATGTTGCCTAAAGTAAGCGCCAAGACCAAGTTCAAGTTGACCGCCCATGAAGGCTGTCGAGTACGAAAGGTGGCGCTGTCGAACTTCACCAGCATTAGCTCTGAAGATTACTCTGAGAACGCTCTGGTGTGTCTGACCAATCTGGGCGACAtccatgtgttcagtgtgccGGCACTGAGACCGCAAGTGCGCTACGACTGCATCCGCAAGGAAGACATCAGCGGCATTGCTTCCTGTGTGTTCACCAAAACTGGACAAGGGTTTTACCTGATTTCACCGTCGGAGTACGAGCGCTTCTCGCTGTCGGCTCGCGTGATCACAGAGCCGCTGTGTCGAGTGGATGTGGAGCGACCTCAGGATCTCTCTGCTCACAGcatatttGGATCTTTTTTTAGCGGCTCCAGCACGACGTTCCCACCACAGGCTAATGGAACACACAAGACACAAGCAGAGAGCAAGTCTGAAGGGTTCTTTGATGAGATGCGGAGCGCCTTGCCCTCGCCTGTCCTGGATTCCCCAAACAGCAGCGCTGACATCACTCTGGACACCACAGGCGAGATCACCGTTGAGGACGTCAAAGACTTTTTAATGACGGTGGATGAAGCTGAGAATAACTACAGAAACATGACTGAAGAAGACGGGAGGCCTCCTGGAATCCTCATCAACTGAGGCGAGCCGCAGACAGCTGGAGTTATGGGTGAAGACTCATCAGCTGAATTTCTAAGTGGATCTTGATAGAGTGGTTTGTGACTCCGGAAGTTGCACCAAACATTGTTCATTACGTTTTTACAATGGGAATGTTGCACTTTTTTTCCCTGTGCCAAAAGACTGAATGATTCATTGtattttcctcattttcttCACCTTTcctccagttttttttttttctcagacaaCCGTTGGTTTCTTTTGAGGAGCcataaaatggtacattttaagGGATCAGGCAATAAAACAGCCGAGATATTGCACAATGTCTGTATGCAGGTAGAGGGCTACTTGCACTGAGCCCACAAAGTTTTTCTTCTTCGTTTGTCTTTTAAACATTCCTCTTTTGTCACGTCACCTCTCCTCTCACTGTGTGCCATGAATTAGGTTATACTAAATCGAATCAAAATTCCTAGATGTAGATTACATAGCTGCTACAGTTCATTAATCTCTAAAGGGTCTTTTGGGGCGACCAACTGCACAACAGAAAGTAATTATTCAAGCATAATTatctggaaaaaaatactaagtGCCCTGCTCATTTATGAAGGTATATtctttccgttttttttttttttttctcatcatgATAGCCTTTTCAACAATATCTATGATACTGTGATGGTTCCTGACCTCAAATCAGGAGTCTATTGAAAAGTTCAAGTTATGGACCCTGTGGGTTTGATAGAGATATTTTCCTCTCATTCAGTcgtctttattattattgttattattattatttttaaataatgtcccTTAACCACTTGCCATTGTAAGTAATTCTGGCAGTTAACTGTGAAGTGTGTCGTTTGAAGGAACATGGTGTGTAACCTTTTAGTATTCGCCGCAGTAATTCTAACCAGTTTTTGGCACAGCATTAACAAGGTATGAAGGAGCTAATGACTTTTCTATTTACACAGTATTCTTTAGAATAATTTTATATGGCTTATAAGGGTtggtattttgtattttatagatatttcaCTGGCATTTAGGTAACTAGGCATTTCTAACACTGCATTTTTGGGGCAATTATAAACAGTTGTGtagtattacattatattactaTACTATAGGCATTAGTGTAGCTTATCAAGGGAAAGAGTTATTGAGGGAATAGGACAAGTGTTGCACAGACATATTTGAATAAGACACAACTGGCTCCTTGGGTCAGATAATGCAGATGTTAGTCAGTGTGCTTTTAGAAGTAAAGTATGACATTTAAAGTGAAAGGCTctatttacattgtaattacaaagaaaactgCACATAAATACGTTGCTTGGTATTGATGCATTGTCACATTTTCTCCCTGCATTTTctgttctttgttttattggttaTATGTCAAGGGACCTCACTAATTGTAGTTTAAtttctgtttgtatatttgCCTTGCATAACCTTTACTTTCCATCCAGCACCTATCCTGTGaacatgtatttaatttttatttttctcgtgtagaattttaatttgagaTATAGCAATGCTAATGAAATCTTGAATGTTAATAAAGTATTTACTCCACA

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016323 basolateral plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30352 lncRNA downstream 95843 15366136 ~ 15366451 (-) True G20363
TU30323 lncRNA downstream 128808 15280347 ~ 15333486 (-) True G20338
TU30340 lncRNA downstream 137683 15319710 ~ 15324611 (-) True G20352
TU30330 lncRNA downstream 207677 15252095 ~ 15254617 (-) True G20344
TU30157 lncRNA downstream 472303 14988277 ~ 14989991 (-) True G20253
TU30588 lncRNA upstream 143116 15635072 ~ 15637612 (-) True G20546
TU30614 lncRNA upstream 329263 15821219 ~ 15821945 (-) True G20571
TU30675 lncRNA upstream 713413 16205369 ~ 16207819 (-) True G20624
TU30682 lncRNA upstream 722644 16214600 ~ 16216244 (-) True G20630
TU30679 lncRNA upstream 726290 16218246 ~ 16219257 (-) True G20627
XM_043230622.1 mRNA downstream 120417 15338962 ~ 15341877 (-) True b9d1
XM_043235652.1 mRNA downstream 145733 15309745 ~ 15316561 (-) True grapa
XM_043235651.1 mRNA downstream 152687 15302248 ~ 15309607 (-) True fam83ga
XM_043231994.1 mRNA downstream 247612 15180602 ~ 15214682 (-) False arhgap23a
XM_043228918.1 mRNA upstream 2444 15494400 ~ 15523417 (-) True myo15aa
XM_043232144.1 mRNA upstream 43004 15534960 ~ 15538510 (-) False drg2
XM_043232154.1 mRNA upstream 43004 15534960 ~ 15538506 (-) True drg2
XM_043232132.1 mRNA upstream 57397 15549353 ~ 15557114 (-) True znf598
XM_043235010.1 mRNA upstream 65999 15557955 ~ 15569943 (-) True flii
TU30272 other downstream 283066 15120806 ~ 15179228 (-) False plcd3a
TU30290 other downstream 316702 15142941 ~ 15145592 (-) False LOC122341947
TU30091 other downstream 1022753 14435150 ~ 14439541 (-) False mlx
TU30582 other upstream 106822 15598778 ~ 15600286 (-) False atp5mf
TU30746 other upstream 959184 16451140 ~ 16451800 (-) True G20680
TU30805 other upstream 1223804 16715760 ~ 16729665 (-) False mafk
TU30968 other upstream 1547234 17039190 ~ 17042336 (-) False snn
TU31152 other upstream 2171549 17663505 ~ 17691189 (-) True h3f3a

Expression Profile