RNA id: XM_043234012.1


Basic Information

Item Value
RNA id XM_043234012.1
length 2416
RNA type mRNA
GC content 0.53
exon number 16
gene id unkl
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17691906 ~ 17715622 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCGAGAGCATGAGTAGACGAGAGGGTCCCCGCGCACGCGCTATTATTGTTTTGACTGAAAATGCCGTCGGTTTCGAAAACGGCGGCGAGCGCTTCTCCTCAAACCGAGAAACCAACCCACTATACaTATTTGAAGGAGTTCAGGACCGAGCAGTGCCCACTGTTTTTGCAGCACAAATGCACACAGCATAGACCCTTTACGTGTTTCCACTGGCATTTTCTAAATCAGCGAAGACGGAGACCAATACGAAGAAGAGACGGGACTTTTAATTACAGCCCCGATGTATATTGTACGAAGTATGATGAAACAACAGGCATATGTCCCGATGGAGACGAttgccCTTATTTACACCGGACCACCGGTGACACAGAGCGCAAGTACCATTTACGCTACTACAAGACCGGCACCTGCATCCATGAGACAGATGCTCGTGGGCATTGTGTGAAGAACGGCCTTCACTGCGCCTTCGCTCATGGGCCACACGACCTACGGCCACCAGTTTATGACATCAGAGAGATCCAGGCCCAGGAAGCTCTGCAGAATGGCCAGTTGGGATCTGGAGAGGGAATTCCTGACCTGCAGCCGGGTGTGCTGGCCAGCCAGGCCATGATTGAGAAGACCCTGAATGAGGACCCACGCTGGCAAGACACCAATTTTGTGTTGGCCAACTATAAAACCGAGCAGTGCACCAAGCCTCCACGTCTATGCAGGCAGGGCTATGCCTGTCCTCATTATCACAACAGCAGAGATAGGAGAAGAAATCCCAGAAAGTTCAAATACAGGTCGACGCCGTGCCCGAGTGTAAAGCATGGAGATGAATGGGGCGAGCCCTCCAAGTGTGAGAGCGGGGACAGCTGTCAGTACTGCCACTCTCGCACCGAACAACAGTTCCACCCAGAGATTTACAAATCAACAAAATGCAACGACATGAGGCAGACTGGATACTGTCCAAGGGGTCCATTCTGTGCTTTTGCACATGTGGAAAgaatTCCTTCCACAGAGGAGACCATGAGCACGTTGCTCACAGCAATGCAGTCGGGGTCTCAGTCCAAGCTGGGCTCTCCTCAATACCCAGAGTGTCCAGTCAGCGAGTGGAGCAGCAACACCAATTCCATCACCAGCAGCGGCAGCAACAACGGCCAGACAGGAAACGTATCATGCACTAATAGTCCAACTGTAACACCAGGCTCAGGGAGCAACAGTTCTTTGTCCCCAATTGGACCCATCAGCAGGCCAAAATGCTTTACTAATGGTAGCTTTTGTTCAGAGTCCACCACGTCCAGTGTTTCCTCTCCGACGTCTAACTATCCCAAAGCTCCAGGTTTTGAACGGGAGGATCAGGCAAAGAACCAGAAGAGCCTGATCGGGGAAAATAATCAAAAGTTAATGGACCAAGACAAACAGGCTCATGGCAGTGTGTTCTCAGTAGTGAACCCACTCGCGTCTAGTATAACATCAAGCATCACGTCCAGCTTGGCCTCCAGTATTGGATCTGACAGCTCGTCACCCACCACTTTATCAACCATGAATGCAAAAGCCACGCCTTTCTACCCAGGCAGCAATACTGTGGAGTCAGTAATAGGATCTGCACTTGACCTGAATTTTAGTGACATCAATGTTGCCTCCCTTGACAAAGAGCTAGAGGACCAAGACAACAATGGCCTTGGTTTAACAAGTCAGAGGTTATTAGGAGGCTCTGCTCCTGTCAATATTCCTGGCTCTCTGGCTCGGTCTTCCTCTCTGCATTCCTCATCGTCTCTCTCTGCCTCCCCGCTCAGTTCTCTGTCTCAATCCCTGTCCCAGTCTCTCCTCACTGGAATGGCCTCCCAGCAGAGCCAGCCACAGGCCCCACCTGTTAAAACCGAGCACGGCCTTCTGGGAACACCCACATCTACGCAGAACTCCTTAGGTCTGAATGGCGGAGCGGGGGGAATATGGGATTTTATGAGTGGCAGCTTCTCTCCCAGCCCTTCTCCAGTGTTCAGTAGCCTTACTTCCAGCACGGTCGGCTCCAGCAGTGCAGACATCGGCCGACTCCTCCGAGAATTGGATGAAGCCAAGCGCAAGATAAAGCAATGGGAAGAAGCCTGGCATCAAGTAAAGCAGGCCTGCGGAGCGTGGCAAAAAGACGCTCACGAAGCGAAGGAGCAAGCTAAATCAGCAGAGGCAGAGCGGCAGCTGGCGGAGCAGAAGCGGGAGGACACCGAGCGCAAGCTGAAGGAACTGCAGGGAGACTTTGACATTTTGTGTCGCTCCCCCAACACTCCCCTCCTGCGCAGCTACGGCGAGCTGGACCAGCTCCCCCTACCAAAGCTCCGCTCCATCCAGAGCCAGCTGCGCTCTGACCTAGACCTCATAGACGGGCCACCACCCCAGGACTGGATAAAGGCACAGTGAGCAGCAAACACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31133 lncRNA upstream 1618 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 40605 17650767 ~ 17651301 (+) True G20953
TU31095 lncRNA upstream 119433 17572130 ~ 17572473 (+) True G20927
TU31072 lncRNA upstream 128542 17553374 ~ 17563364 (+) True G20915
TU31064 lncRNA upstream 175477 17503896 ~ 17516429 (+) True G20908
TU31199 lncRNA downstream 146445 17862067 ~ 17863081 (+) True G20994
TU31206 lncRNA downstream 184955 17900577 ~ 17901454 (+) False mrtfbb
TU31215 lncRNA downstream 209729 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31270 lncRNA downstream 264545 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA downstream 319917 18035539 ~ 18042621 (+) True G21049
XM_043234014.1 mRNA upstream 6211 17679275 ~ 17685695 (+) True gper1
XM_043234016.1 mRNA upstream 23214 17658434 ~ 17668692 (+) True gpr146
XM_043234017.1 mRNA upstream 23214 17658434 ~ 17668692 (+) False gpr146
XM_043234015.1 mRNA upstream 23214 17658435 ~ 17668692 (+) False gpr146
XM_043225571.1 mRNA upstream 69685 17578740 ~ 17622221 (+) True baiap3
XM_043235999.1 mRNA downstream 154555 17870177 ~ 17901491 (+) True mrtfbb
XM_043236005.1 mRNA downstream 188962 17904584 ~ 17906183 (+) False polr3k
XM_043234678.1 mRNA downstream 205295 17920917 ~ 17929634 (+) True si:ch211-66e2.5
XM_043234071.1 mRNA downstream 216083 17931705 ~ 17954332 (+) True tyk2
XM_043234073.1 mRNA downstream 216094 17931716 ~ 17954332 (+) False tyk2
TU31020 other upstream 496022 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 574865 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 685921 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30774 other upstream 992424 16690703 ~ 16699482 (+) False LOC122331507
TU31132 other downstream 3560 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 188982 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 358775 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 382023 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 690344 18405966 ~ 18425076 (+) True nubp1

Expression Profile