RNA id: XM_043234023.1


Basic Information

Item Value
RNA id XM_043234023.1
length 2764
RNA type mRNA
GC content 0.50
exon number 3
gene id mchr1b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23873131 ~ 23877674 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTTATCCTTCACAAAGAGGCTAAATACTTATATcaattataaataacataaattacAAATAGCATAAACAAAGCCTCCCATAGCGCATTAGAAACTATTATGTTTTAGTTATTGGCCAACGCACACTTCATCAGCTGCCTAGGCTGTAGCCTAATGTGTGTTAATGTCAATTAGTTAATGCATGCGGGCTACAAAcgtttacaaatatttttgtaaatatgcaaatgatcaTAGTCTGTATCGCTTTCACGCAGGCTGAAGAGGCTGTCAGAGAAAATACACCACCGTAACCTGCATGGCAGTTCATTTAGGTGCAGATCACTGCTTCAGTGTGCGTTTAACGCGTGGGCTGATCGGTCCCCTCCAGGTCTGAAAACAACTCTTAAGCGCGTCTCCACCGTTCACAGACCCTTCAAACCCAGCCCGATCAAACAGCAGGGGAAAGACGCGCGAGCGAAGGCGACTGAGGCAGAGCGCTGCCCAAACGGACGACGTCCGTCACGATAAAAAGGGGGCAGCAAATCAGACTCTAGATCGATCTCGACCCTTCAGATAACACGCACGGCTCCCCTTCCCCGCGCTTGTTCTGTCCGCTGGGAAGAGACGAGAGCGTCGACGCTGGAGACCGGTGTTTGAGGAGCTGTCGACCAGTGGCATGCGTCTCAGAGGACCTCTGTGCGTGCGGCGTGCCTCATAATCagataaagGGTCAGGTTTGTGATGGATTTCCACGCGACCTCAGCCGAGAACTCCAGTGAGGAGTTTAACTCGTCTCAACGTTTAAATGCAGACACCGGCGAACGGTATCACAATGTCCTCATGCCAAGCGTTTACGGGGTCATCTGCTTCGTCGGCATAATAGGCAACTGCATCGTCATCTACACCAtcgtcaaaaaaaacaaattcagagCTCAGCAGACGGTGCCTGACATCTTCATCTTCAGCCTCTCCATCGCGGATCTCCTGTTTCTCCTTGGCATGCCGTTCCTCATCCACCAGCTGGTGGGAAACGGCTCGTGGTGTTTCGGCGCCACCATGTGCACCGTCATCACAGCGCTGGACTCCAACAGCCAGATCGTGAGCACCTACATTTTAACGGTCATGACTTTGGACCGATACCTGGCCACGGTTCATCCCATCCGCTTCAACCACGTGCGCACTCCGTGCGTGGCCGTGGCCGTGGTGGGCCTGGTCTGGACGCTCTCGCTGCTGTCCATCACGCCCGTGTGGATGTACGCCGGCCTCATGCCCCTGCGGGACGGATCGGTGGGATGCGCTCTGCTCCTTCCCGATCCGGCCACGGACACCTACTGGTTCACTCTCTACCAGTTTGTGCTGGCGTTCGCTCTGCCGTTGGTGATCATTTGCGTGGTGTTTTTCAAGATCCTCCAGAACATGGCCGCCACGGTGGCTCCGCTCCCCCAGCACAGCCTTCGGGTGCGCACCAGAAAGGTCACTCGGATGGCCGTCGCCATCTGCCTGGCCTTCTTCGTTTGCTGGGCGCCTCATTACATCCTGCAACTGGCACATCTGAGCGTGCAGCGGCCCAGTTATGCCTTTCTGTACGCTTACAACGTGGCCATTAGCATGGGCTACGCCAACAGCTGCATTAATCCGCTGCTCTACATCGTGCTGAGCGAAACCTTCAAAAGACAGTTCATCGTCGCCATCCGTCCGGCCCACAAAGACTTCCGAGTTGATGCGGCCGAGGGGAGTGTCAGTCTCCGTCTGGCCCCTGACGGACCGCAGCAGTCTCAGTCGTCCCGCGAGCTGCTGCCGGTTACCGTGGCTGTGCACTGAACCGCCGTTGCTCGGTTCTTTTCGTGCGCGTTTACAAGGAGCGTGCTGCTGAAAAGACGTCTCGCAGAACTGCTCGTTTCGCGATTTATAACGGATCTGCGATGACGCACGTTTTCCTTGCCATATTGTTGTGCAGTGAAAGTGGTGTGAAGTACACAGCACCTCATTACCTTGCCATTACGGccatttgttttgtgtaaaacGGGGCTCCTTGTAAGTCTCTTTGGCTTGGCcaaggatgcattcatttgGTGACTttagggttagttcaccccccaaaaaaacgaAAACTCGAGCACGTTCGTAATTACctcgccctcatgtcgttccaaaccctgTAAGGCCTTTGTTCGTGTTCAGAACACAAACTAAGAtgcttttgatgaaatccgaaaGCTTTCTGATCCTGCTAGAGAACTACTACAGAcacagtaactaaattataatAGTTTTGCATGTGCTATGAGGAGGCTACGTTTCTGAGTAcatgaattgttatttttaaactctTAATAAGTGATATAAGTATTTAGCCTCTTTGTGAAGTCTAAGGATGAGGGATAATTTCGCAGGTGGACTCCATGCCATGGTTTTGATCTGACTTTGAAGTCAAGCGTCCTTTGAAAACAGTTATCGGCCGATATAAGGTTACACAGGCCTTAATCGGGTTAGATGCCTTGTGCAAGTCACaaaatcagattacttttttaagTGGGGCATCGGTTGCAtcgattttaaaaaacaaaacaaaaaaacactggataTATGTCTAAGGTGattgtgtacacacactgcCAGCATACAGtttatgttcaaacaacaaGTAAATGTGAATTTTGCATCCAATGATCCCTTTAAGTAACTGAGTAATGCATAACTTTTCAATTTACAAAGAAATATATGAGTTGCTTTTTTGAATAAGCAATGCCGGTTACTTGGTTTCCCGTGTATTGACTGTCAGC

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030273 melanin-concentrating hormone receptor activity molecular_function

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33911 lncRNA upstream 1954 23870795 ~ 23871177 (+) True G22857
TU33879 lncRNA upstream 67642 23802176 ~ 23805489 (+) True G22833
TU33856 lncRNA upstream 113789 23758743 ~ 23759342 (+) True G22816
TU33840 lncRNA upstream 117134 23754522 ~ 23755997 (+) True G22802
TU33831 lncRNA upstream 124122 23671394 ~ 23749009 (+) True G22795
TU33918 lncRNA downstream 8568 23886242 ~ 23886606 (+) True G22863
TU33920 lncRNA downstream 13923 23891597 ~ 23891994 (+) True G22865
TU34016 lncRNA downstream 26501 23904175 ~ 23906257 (+) True G22921
XR_006250515.1 lncRNA downstream 203843 24081517 ~ 24083484 (+) True LOC122342062
TU34062 lncRNA downstream 203892 24081566 ~ 24082876 (+) False G22957
XM_043230466.1 mRNA upstream 156555 23709503 ~ 23716576 (+) True c1qtnf6a
XM_043235509.1 mRNA upstream 167693 23696196 ~ 23705438 (+) True il2rb
XM_043235839.1 mRNA downstream 162228 24039902 ~ 24051913 (+) True LOC122342055
XM_043235831.1 mRNA downstream 174248 24051922 ~ 24056391 (+) True LOC122342045
XM_043235837.1 mRNA downstream 181019 24058693 ~ 24071844 (+) True zgc:171844
XM_043235833.1 mRNA downstream 206312 24083986 ~ 24094610 (+) True tom1
XM_043235834.1 mRNA downstream 260869 24138543 ~ 24142121 (+) True LOC122342047
unassigned_transcript_294 other upstream 36951 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 464317 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 709415 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 966436 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 1325923 22546158 ~ 22547208 (+) True G22329
TU34051 other downstream 172565 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 173064 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 217350 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 556381 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 569204 24446878 ~ 24449289 (+) True G22953

Expression Profile