RNA id: XM_043234043.1


Basic Information

Item Value
RNA id XM_043234043.1
length 1973
RNA type mRNA
GC content 0.45
exon number 9
gene id rnf25
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12168881 ~ 12173874 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGTTGATGTATAATGAGGACATGAATATGCaaagaatagtttttttatgtattattgttttttattgactaatattcatgttttttttattcgttGACAATTAGATAattgttttgcaaatgtttgtttgtggatGTAATActatgtaaaaattttaatattcacaACATACTCAAACCTTTTGCTTTGgtgtgtattttaaagtatttggtgtgttgttttttttttttttttttaagtattttaaagtgtagGCTACTACACCTCTGACTTCGTTCAAAATACAAACAGATAATACACAGATCTGTGCGTtccccaaaaataaacataaataaatccCTCTTGGCGAGATTTTATGTGTGCATcgaaaaattaattcatatttacagTCATCTCTGTGTCACCTGACCGATGTCGTGGACGGGTGACGTCACTGCGAACATGGCTGCCGAGAGCGATGTCCTGTCGGAAATTGAAGTGCTGCAGTCCATCTACTTGGATGAGCTTGGTGTTGAACAGAGAGACGGAGGAGGATGGACAATCAGTCTGGTGCTCTATCCCTCCACAGCGGAGGACTGTCTGTCCCAGTTTGTCCGTCTTACATTGACAATGGATCTAGACTCTCAGTACCCATATTCATCCCCTTGTATCTCTATTCACAATCCACGTGGACTCTCGGATGATAAGCTGCTCAGtttacAGAGTAGTTTGCAGATGGAAGCAGAGTCGTGTATCGGGACAGCTGTACTGTATCAGCTCATAGAGAGAGCCAAAGAGATTCTGACTGAGAGCAATATTCCCCATGGAAACTGTGTCATCTGTCTGTATGGATTTAAGGAAGGGGAAGTGTTCACGAAGACCAGCTGCTATCACTATTTCCATTCTCACTGTCTTGGCCGCTATATCACTCACTCTGAGATGGAGCTGAAGGACCGTGAGAGGGAGCTGGAGGAGGATAAAACCAGAGACGGGACCGAAGAAGAGGGATTATTTGTTGGTTGCCCCGTGTGTCGAGAGCCTCTCACCTATGATTTGGATGCCCTCCTTTCCTCTCCAGCTCCAGTTTTCACACAGGCTTCAGCTAATGTTTCTGACACTCCTTCAACGGATGCCTCTGGTTCCGAATCTACTCAGTCACTCCCCTCCTCGTCCCAAGATCCCACTGATGTAACCCAAGTCTCTCAAAGTCATCACACTACAGGCCAATCACAGCGCTTGTGCACTCATGAAAGAAGGCCACAAGGTGACTTTAAGAGAGGTCgtagaggaagaggaggaggtggaAGGGGGGGGTCAGCTCGTCACATGATACCTACACCTGGGGTAGAACGGTTGGGCAAGCTCACGCATTCTTCTGATGAGATTAATCATGTGAACTCAGGCCCACCGAACACCACACCACAGGGAGAAAGTACAGCACAAGGACAAGAATGTGAACTCAGTGATAATATAACACAGCTCAGGCAGCCTATGAccaatgaagaagaaaaaacagtttCTCAAGAGAAGGTTACATCAGAATCCAACTGTGGACAAAATGTGAGCCAACAAAAAGTGTGTATTTCAAAAGATGTGACACAGACAATCTTACACGAAGGACACCCAGAGAGGGAACATGTGGTTAGAGGATGGAAGCGTGGCGGTCGTGGCTCTGGACGACATCATGGACACTGGCAGGAGAGGAACTTCAAGGGACCCAGTCACTGGGATACTTCTGGAAGCATTGGCCACCGTGGAGGAGGACACAGAGCCAGAGAGGGAGGGGCTGGGCATCATCACAGAGGGGGCGGGGCTCATAGAGGTGGTGGGAGGGGATTGCATCAGAGAGTGGAAAAAGAATTTAGGAAAGAGGGAGTACTCTGACAGTGGGAGAGGGGAGGAGCAGGCATAGAAACAAGCATACCTCCCAGTTTTACCAGCTGTACCGTCATTATGTCAGTGTCTGTAATAAAATTCTCCGCAAGCAGTAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10640 RNF25, AO7; E3 ubiquitin-protein ligase RNF25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28710 lncRNA upstream 33924 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 50106 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 50972 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 94378 12074231 ~ 12074503 (+) True G19257
TU28685 lncRNA upstream 95808 12072719 ~ 12073073 (+) True G19255
TU28736 lncRNA downstream 54061 12227935 ~ 12228520 (+) True G19287
TU28700 lncRNA downstream 72334 12246208 ~ 12249997 (+) False LOC122341822
TU28784 lncRNA downstream 338052 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 338052 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 507384 12681258 ~ 12681565 (+) True G19579
XM_043234070.1 mRNA upstream 150 12163610 ~ 12168731 (+) False si:dkey-16l2.16
XM_043234066.1 mRNA upstream 150 12163640 ~ 12168731 (+) False si:dkey-16l2.16
XM_043234069.1 mRNA upstream 150 12163829 ~ 12168731 (+) True si:dkey-16l2.16
XM_043235314.1 mRNA upstream 6240 12159182 ~ 12162641 (+) True thoc6
XM_043234868.1 mRNA upstream 10280 12149797 ~ 12158601 (+) True srrm2
XM_043234060.1 mRNA downstream 402 12174276 ~ 12177729 (+) True kat8
XM_043234668.1 mRNA downstream 5349 12179223 ~ 12182498 (+) True si:dkey-16l2.17
XM_043235340.1 mRNA downstream 9377 12183251 ~ 12192143 (+) True fus
XM_043233706.1 mRNA downstream 20104 12193978 ~ 12215690 (+) True setd1a
XM_043234932.1 mRNA downstream 42737 12216611 ~ 12230379 (+) True hsd3b7
TU28690 other upstream 68029 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 334957 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 334957 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 334957 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 799129 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 129490 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 338052 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 338052 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 345963 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 661507 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile