RNA id: XM_043234071.1


Basic Information

Item Value
RNA id XM_043234071.1
length 5018
RNA type mRNA
GC content 0.46
exon number 24
gene id tyk2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17931705 ~ 17954332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCGGAATGTGACGCGTCTTCTTCGTCTCGAGTTCACGTAGCGAGAGTGAAAATACGCAACGTCTGCTGAGCGCGTCAGTGACTAGAGATGTGAAGCCTGTAAAAAGAGGACAACTGAACACTGTGTGAGATAAACACCGTCGTCCATCTGCCTGTGCTGAACTCCATGTATAATGTCTCGACGAGGACGTTCAAAAAAATCCAAAGCTCACGCATTCACAGGACAGTGTGAGGGTCCAGGGGTCCATGTGTTTCTCTTCTGGACCAAAGAGGGAGAGCGCCGCCTGACTTACAAGGAGGGAGAGGTGACTGCTGAAGATCTGACCATCTTCGCAGCAAAGACTGTGGGGATCACTCCAGTCTGCCATGCCTTGTTTGCGCTGTATGACCCAGCTTCTTCATGTTGGTACAGTCCAAATCACAAATTTAATGCTGAAGACCGCTCTGGCCTTCTGCTGCATTTCCGCATGAGATTTTACTTCCGTAACTGGCACGGATTAAGTGAAAAGGAACCGGTAGTGACACGGTATGCATTACGGACTGGAACAGGGGCAGAGTCGGTGAAGTCTCCTTTGCTGGAGATGACCTCTCTGGAATACCTCTTTGCTCAGGCGAAATACGATTTTGTGAATGACTTGACATGTTTGGACGCAGTGAGGGGAGAGGAAGAGATCAGTCGCTTTAAGAATGAATGTCTAGGCATGGCTGTGCTTCACCTCTCTTACACAGCACTACAGAGTGGCTCTTCTCTACAGGATGTGGCCAAGCAGACCAGCTTTCTCCATTGCATCCCTCAATCCTTTTCCCGACAAATTGCCCGGGATAACCTCCTGACGAGGTTCCGTATTCGGCGCGTGTTcacaaactttgtgaaaacgtTCCAGCAGCACACGGTGGGAACGGGAAAACTTGGAGCGCAAGAGGTCATGTACAAGTATATATCCACACTGGAGCGGCTGGCACCAAATTTTGGCGTCGAGACCTTCCCTGTGTTCAATCTTGACTTGAGAGCTGATGGAGATGGAAGTGGGTCATACCTCAACGCCTCCCGAACACAAGCTCCCTCTGAGGAAGCTATGAACGGTGAAGCTACTTATGAGATCAGAGTGTCTGGCTCAGCTGGCATATGCTGGAGGAAGACAATGGGTCAGTGGGGAAATGACTATATTCCTAGTCAGAACGGAGAAGCACAGCCTCCCGATGAACAGGAAATGGACAGCTGGAGCAGCTTCTGCGACTTCCCTGAGATCTCTCTTATTGCCATCCAGGGTATAAACGTCTGCATCAGTCGCCAAGACAACATGGCAATGAATATGCGTTTGGGTTCCAGTCTTCAGGCTCGCTCTCTGGTTTCACTGCTGGATGGATATTTCCGCCTCACAACCGACGCACATCATTATCTTTGTCACGAAGTGGCTCCCCCCAGAGTGGTTCTCAGCGAGACCAATGACCTGCACGGTCCCATACTGGATGAGTTTGTGTTACAAAAACTAAAGAAGGAAGCAGAGGAGGGAACGTTTATTGTGCGCTGGAGTGTATTGGATTACCATCGCATAATCCTTGCATCTCTTAGTCGGACAAAGGATGGAGAAAATCCTATATACAAGCAGTTCAGAATTACACAGAAGGGCTCCATGTTCAAACTGGAAGGCTGGGATCAGGAGTTCTCCAGCATAAAGGAGCTCACCAGTAGCTTAAAGGCCTTCGTGCTGAAGTCTGGAGAAGACAGCTTCACTTTGAAGAAGTGCTGCCTGCCCAGACTAGGAGAGCTATCAAACCTTCTCATAATGAGAAAGGGTGCCAACAGTAGCATTAAAACGGTCTCTGAAGCCCTAAACCTAAGCCAGCTGCGGTTCCATCAAATTAAGGACAAGGATATTACAAAAGAGCAGCACTTGGGACGAGGGACCAGGACTAATATTTATTCAGGCTGGCTGAAGGTTCACGGCTCACTAGAGGAAGAAGACGACGAGTCTAATAACAATCACCGCAATGTGAAAGGCATCCGAGTTGTCCTTAAAATTCTGGACCAGAGCCACAAGGATATAGCACTAGCATTCTTTGAGACGGCTAGTCTAATGAATCAGGTGTCACACTGTCATCTGGTCTTTGTTCATGGAGTTTCAGTCAAGGGATCTGAGAACATTATGGTGGAGGAGTTTGTGGAGTTCGGCCCATTAGACGTGTTCCTGCACAGAGAAAAGGCGCGTGTCACTCCTCAGTGGAAGTTCACTGTGGCTAAACAGCTTGCCAGCGCTCTTTGCTATCTTGAGACAAAGCGTTTGGTCCATGGAAATGTCTGTGGCAAGAATATTCTGGTGGTCAGGAAGGGTTTGGAGGAGGGCACGTCCCCGTTTGTGAAGCTTAGTGACCCTGGCATTTCTCTGTCGGCTCTGTCTCGTGGAGAGCGCGTGGAGCGCATCCCGTGGATCGCTCCGGAGTGTATAGCCGACGGGGCCCGTATAGGAAGTGCAGCAGACCAGTGGAGCTTCGGGGCGACTCTGTTGGAAATCTGCAACAATGGAGATCTTCCTGTCAGCGGGAGCACACTGCCCGAGAAAGAGCGATTCTATGAGACGCAGAGTCGCTTGGCTGTGCCGTCCTCTCAGGAGCTGGCGAGCTTTATCAGCATGTGTCTGACCTACGACCCAGCTGCACGGCCCTCTTTCCGGACCATTCTGCGAGAGCTAACAGAGATTCAGATTAAAAATCCAGACATTTCATCCGAATGCGAGTCGCTCCCAGACAGAGACCCCAGTATTTTTTACAAACGTTACCTGAAGAAGATCAGAGATCTGGGAGAGGGACATTTTGGGAAAGTGATGCTGTACGTCTATGACCCTGGCAATGATGGAACGGGAGAGTATGTGGCTGTGAAGGCCTTGAAACAAGAAAGTGGAAGTAACCTCCATGATTCCTGGATGAAGGAGATCGAGATACTCAGATCACTTTACCACAACAATATTGTCAAATACAAGGGGTGCTGTACTGAACTGGGAGGACAGGTGGTTCAGTTAATCATGGAGTATCTACCACTGGGAAGCCTCAGAGAGTACCTGCCCAAACATCGGCTGGGAATTGCGCAGTGTCTCTTGTTTGCGCAGCAGATCTGTATGGGCATGGACTATCTGCACTTGAAACGCTACGTCCACCGGGATTTAGCTGCACGGAATGTTTTGGTGGAGAATGAAGGTGTGGTTAAGATCGGTGACTTCGGCTTGACGAAGTACATTCCCGAAGGAGAGGTCTACTATCGTGTTCGTGAGGACGGAGACAGCCCTGTGTTCTGgtATGCCATTGAGTGCCTGAAGGAGAGCAAGTTTTCCTTCGCGTCTGATGTTTGGTCCTTTGCAGTAACCCTCTATGAGATTTTAACCCACTGCAACCATCGCCAAAGCCCCCCTTCGAAATTCTTTGAGATGATGGGATTGGTCCAAGGTCAAATGACTGTGGTTAAACTTATTAGCCTCCTGGAGAAAAATGAGAGATTGCCATGTCCTCGAGACTGTCCTCGTGAGGTCTATTTACTGATGGAGCAGTGCTGGGATTTCTACCCCGCGCAGCGTCCATCGTTCAGTTCCCTGGCTGAGTCTCTGAAGGACATCCTGCAAACCTACAAACAGCAACCGTCTGTGCAGCTCGCTCAGCTCAACCATTGCTGACCTgctctttctcttcctgtgCCATTCTCACAGCCTGTAACCATAGCACTGAGCCTGACCACACTTAGCTCATtgggctatttttttttttttttagaaaagaggatgttttttttttatgttcatttgaGGGAACCCACATACTGTACCACTCTTTCTACCAAAACTGTGCTAGACCCAGGGTTTTACAAATTCTTAGAACTGTTCGCCACTTTCAGTCACTTGCGAAGTGAAAGACAACTTAACTTATTGTTACTCCATAGCCACCAGCTCCAGCACAGGTCCTCTGTCGGTGGAAAAAAAGTTAACTGTGTCATTAAGTGCTCTTTAAAGTGACCGTATGTACGTTTTCACcttgtcaatcaatcaatcaatcaatcgtttttatttatatagcgcttttaacaacacaggttgcatcaaagcattgtaataatcagtctcAAAATCATTGTGGTGGTACACTGACTTCTAAGAAGGCGAATGACTTTCCCACACTGTGACTCTTCTGGGAGTAAAATAACTGCCAAAGCGGTGACTTGCTTTACAGCAGAAACAATGTATACACGTATACAGCTGTCCACTGTAAAAACTACAGTGGATTCCTCACTTTACTTTAGGGGTCGCAAAAATATGCAGAACTACATATGGTTGCTTTAAGTCAAGTGTCTTGCTTTTGAAACCATAATAACCAAAGAATGCATGGTTGTggattattcattcattatttcattCCAAATGTAACATATTATTGTGTAAATACTCTCAGGTGTGTTTAGTTGCTTACAAGTTTACATCCTCGgtctgcacacatacacatacacatacacatacacatacacatacacatacacatacacatacacacacacacacacacacatataacataacataacataacatcgGGAGTAGGCAAAGACTGTGACAGGCTAATGACCTTAATTATAAGAATTGAGATGTTTACAGTATGTTATAAATGCCGCTTtgaatgttgttctttttatttatattttctcttttcaaaaaaagtgcaattcttcccacattttatttgtatggaCGTACTTCTTTTGTTCCTTTTGTACAACTTCCTGTGTGAAATGCTTTTGTCTTAATGTTCCACTGAATGTATCTATAAAActctttaataaatgtaattattttaagtgtataCCGAAATACAATCTTTTGAAAGGcattgtgttatttaaaaatggatcCTTTTGGGTTTCCATTCATTGCGAAACAAAGTCAGCGTGAAATAATGAACCCTGTCTATTTATCTGATTGATCTTTAGGTGAATGCATCCATGTATATCTTTTTTTGacctataataaaataacataactcAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K11219 TYK2; non-receptor tyrosine-protein kinase TYK2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31215 lncRNA upstream 2089 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31206 lncRNA upstream 30251 17900577 ~ 17901454 (+) False mrtfbb
TU31199 lncRNA upstream 68624 17862067 ~ 17863081 (+) True G20994
TU31133 lncRNA upstream 241417 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 280404 17650767 ~ 17651301 (+) True G20953
TU31270 lncRNA downstream 25835 17980167 ~ 18067318 (+) True G21045
TU31280 lncRNA downstream 81207 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA downstream 81207 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA downstream 84229 18038561 ~ 18041682 (+) True G21050
TU31309 lncRNA downstream 162206 18116538 ~ 18119426 (+) True G21073
XM_043234678.1 mRNA upstream 2071 17920917 ~ 17929634 (+) True si:ch211-66e2.5
XM_043236005.1 mRNA upstream 25522 17904584 ~ 17906183 (+) False polr3k
XM_043235999.1 mRNA upstream 30214 17870177 ~ 17901491 (+) True mrtfbb
XM_043234012.1 mRNA upstream 216083 17691906 ~ 17715622 (+) False unkl
XM_043228458.1 mRNA downstream 517 17954849 ~ 17970674 (+) True raver1
XM_043228451.1 mRNA downstream 518 17954850 ~ 17970674 (+) False raver1
XM_043235392.1 mRNA downstream 25890 17980222 ~ 18026132 (+) False pde4a
XM_043235393.1 mRNA downstream 59491 18013823 ~ 18026132 (+) True pde4a
XM_043231724.1 mRNA downstream 78380 18032712 ~ 18035362 (+) True dnase1
TU31207 other upstream 25062 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 208282 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 735821 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 814664 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 925720 17005914 ~ 17005985 (+) True trnat-cgu_1
TU31290 other downstream 120065 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 143313 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 451634 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 489058 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 551798 18506130 ~ 18517665 (+) False G21124

Expression Profile