RNA id: XM_043234096.1


Basic Information

Item Value
RNA id XM_043234096.1
length 3316
RNA type mRNA
GC content 0.54
exon number 26
gene id cfap70
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4121759 ~ 4134915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAGAGCCGAGCAACAGTTGTTTGGTCTTGAGGAAAGTCGTTTAGTTTATCGACATGGAGAACCAACGAGAGTTTGGGAGAGCTGTGCCGGTGCAGATCAGTGTTCTGTCGGGAAATAATTTGAGGGGCAGTAGGACTGATTCGTGTCTCAGTTTCGTTCGAGCGGAGTTTAATGGATGCGTGTTGGGAGACTCACAGAAACTGGACACTCCCGAGGGCAAAAACGCGGTTTACAACTTCACCTGTAGTTTCGAGTGCTCAGAAGTGGCACATGCTCTGGACGATGTGGCACACAAGCCTGTTATACTAACTGTGTTCGAGATCCTgccaaaagagaaaaagcaaaaagaggAGAAAACCACAGCACTAGGACAAGCCGTCGTGGATCTGCTGCCGCTCCTGCGAGGTCAGTGCAGCTTCACATCCGCCGTGCTTCTTCACGCCGTGCCCGGATCACCGGCAGACGTTGCCGTACATGAGGATGGCTTAAAGTCCACACTGGATGTGACGGTGCATGTTCCCGAGCCGTTGCTCTCCGATGCCCAGCGCTCTGACTCTAATGTGTTAATGGTCACTGTGGAGACGGCTTATTCTGTTCCTGACGTCTGGAGTCCTGCCTCCACGCCTCCGTCTCAATACATAGCTGCCCTGCAGATGCCCGTCTCTGCCACGAAAGAGCAAGTCTTGTTATTCTCCAATGGCGTATTAAAAATGGGTGGTGAGAAGGAGCCAGTGCCGAGACCCAAAAAATGGCCCTTGGGGTCTCTTCTCGCACCAGGAGCCGAAGTCATTCAGGGCCTTTATATTGATGCAGAGCCCACAGACATGGATCACGGAGACCTTACTGACATAGAGGACAGGGACTTCAGAGCAGATGCTGAGTGTAACCAGAAAAGAGTGAGCTGGGATACAGCACGTCGTTGCTTTATTGATGCGGGGGGTGTGGCCTGTCTTTCCCGCAGGATTGCAGAATGTAGATTGTGGCCTGTTGAGATCACGAAAGCCGTACAGACGGCGCCAACCAAAGGCGGGAAGACGAGGCAGGGGGAGGACGAGGTACAGATCTCATTCCACGGAGTGGCTTACGTGGATCTGGTGCCGTTGTTGTACCCTGGAGTGCAGCGTATACACGGCGTGTACAGAATACACCCGTTTTATGAGTCCGATCTGCTGAATAAAACTCAGAGGACCTACAGTGTTTTGAAGGAGAGCGGCAGAGCTCCGGCAACCCTGGGACGAAACCGAGCCAATTCCTCCGTCAACTCTTTAAAGGCTTTTCAGAGTAGAACCTCGGAGAACCAAAGAGGAAACAATGACGTTTCCAAAAAGCCGGATTCCCAGGGGAAATGTGCTCAGACTGAAAGCGCGTCTGGACTCGAGCCTCAGGTGAACACAGAGGGACAGATGTATGCCGATTCGAGATCGTACATCATTATTGAAATTGCTGTGGAAAAGCCACTGTCTCCGAAGAGGCCGACGGAGGAGCTGGCCAAACGGGTGATGGAGCTGGTTCCTCCCAGACCTCCACTGCCTCGGCGGCCAGCGGGAGCAGAAAgaGCGGTGCAGGAGTATCGCTCTCAGATAGCGAGCGTGGCGGCTCAGGTGTTGGATCAGTACCAGCAGCTGTTCGGGGCCGTGTTTCTGGCCGGTGGGAAACCTCTGGACCCGGTCCTGCAGGAACGACGCAAAAACCAGCTGCTCGGAGAGCTCAACTACTCTGGGAAGTACTTTGCCTTCAAGGAACAGATGAAGTACTCTGTGGTGCGGATCGTCAGAGAGAAGATGTTGAGGACCGAGGCGTTCTCAGACCCCGAGCAGCTGCAAGCGTTCCTGAGTCAGCTGTATGTGTTCCTGGTGGACGAGATGCATGCTGCTCTTAATAAGACCCTGTCGGTGGACTCTCGTGATGCTCATCAGAAGCCTGTGCTGAGCTGTGCTCAACTCAAACACTTCGCCAGAGAGGCCGAGCTCGACGCAGACTACCAGCTGGCGGCACGCTACTATCAGGAGTGTTTGATTCGGGAGCGCAGCGAGCCGTCCCACTGGTGTGATTATGGAGCGTTTCACATGCTGACCGCCGACCACCTGAAGGCCGAGGAGTGCTTTCAACAGGCCTTGTCCATCGAGCAGACGCACGCACCGAGTTTGCTCATGTGCGGCGTGCTGTCGGAGATGAACGGACGCTATGAGGACGCCGAGACCTTCTTTGAGAGGGCCACGCGTGTGGAGCCCAACAACGTGGTGGCCTGGGCTTTGTTTGGTATATTCTGCCAGACTCGGGAGAAGCTCATAGAGGCGGAAATGGCTTTTCGGGAAGCCGGTAAGCGGCTTATTTCGATCCATCAGAACAAGTTACCGTCTAGGCCGGAAAGGACTTCAGAGTCTGGTCGGAAGAAGGAGCAGAAAGACGAGAGCGGCGAGACTCCAGCTGGGAACACGGAGGAGACAGGTGGGCGTGCGGACGAAGCCAATGCTGTACGTGAAGAAAACCCGCCACAGAGCAGCCAGGAGAGCGAACAGGAAGTACAGCAGATAATTCCCCCAACCACTATCTACATGGAGACCGCGTGGTTTCTCCTGCAGAACTACGCAGTACAGATGGCCCAGCGTGCCCTGGCTCTAGAGCTGCTGTCTCCCGACAGAGGCACGGTCAGCTCGTATCATCTCGCTCTGGCCAAACTCCACCTGCTGAGAGGAGATCACGACAGCGCTGAGGCCAGCCTGAAGGAGGCGCTGGCCGACGACTTCCAGGATCCGGACACGTGGGCCCTGTGGGGTCACCTGCATCACGAGAAGGGCGATTCCGCTCAGGCCCAGAGCTGCTACGAACGGACTCTGGATTCAGTGCTGGACGCCTCGGACACACACTCTGTCTACCTTCGCTTGGGCTCCATCTATCTGCAGAAAGGAGAACACGAAAAAGCCAAAGCTGTGTTCCTGCGGGCCTGCAAACGCTCTCCGTCGTGCCTGACTTGGCTAAGGCTGGGAATCGCCTGCTATAGACTGGAGGAGCTGACTGAGGCCGAAGAGGCGCTGACTGAAGCCAACGCTCTGAATAACAGGAACCCAGAGGTGTGGGGTTACCTGTCTCTGGTCTGTTTACAGACCGGCAGGAAGCTAGAGGCGGAGCAGTCGTTTAAATATGCCGTAAAGATGAATTTACAAGAGGAGACGCTTCTAGAAGAGATTCACAAACTGCAGTCACGTGTTGGGTTTGGAAACCCTTCCTTCTGATCCGTCTTATCCACATCAATGCCGTCTTGAACTATCGTTTAATCCCAATGATAAAAAaggtgtaaataaaataataaatca

Function

GO: NA

KEGG:

id description
K24932 CFAP70, TTC18; cilia- and flagella-associated protein 70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24698 lncRNA upstream 60209 3606172 ~ 4061550 (+) True G16604
TU24841 lncRNA upstream 78360 4042872 ~ 4043399 (+) True G16693
TU24840 lncRNA upstream 78360 4042932 ~ 4043399 (+) False G16693
TU24831 lncRNA upstream 86697 4024198 ~ 4035062 (+) True G16686
TU24816 lncRNA upstream 98558 4018533 ~ 4023201 (+) True G16675
TU25143 lncRNA downstream 14667 4149582 ~ 4150963 (+) True G16883
TU25152 lncRNA downstream 80948 4215863 ~ 4219429 (+) True G16890
TU25167 lncRNA downstream 180216 4315131 ~ 4315467 (+) True G16897
TU25168 lncRNA downstream 181921 4316836 ~ 4317051 (+) True G16898
TU25243 lncRNA downstream 276762 4411677 ~ 4441048 (+) True G16956
XM_043231164.1 mRNA upstream 171104 3947832 ~ 3950655 (+) True LOC122333504
XM_043234139.1 mRNA upstream 183337 3928348 ~ 3938422 (+) True LOC122340641
XM_043234359.1 mRNA upstream 205323 3912009 ~ 3916436 (+) True LOC122341043
XM_043234367.1 mRNA upstream 205323 3912022 ~ 3916436 (+) False LOC122341043
XM_043235966.1 mRNA upstream 220310 3895268 ~ 3901449 (+) True sstr5
XM_043234236.1 mRNA downstream 955 4135870 ~ 4145083 (+) True hmox2b
XM_043234242.1 mRNA downstream 1564 4136479 ~ 4145083 (+) False hmox2b
XM_043234107.1 mRNA downstream 20155 4155070 ~ 4274967 (+) True coro7
XM_043234113.1 mRNA downstream 20158 4155073 ~ 4274967 (+) False coro7
XM_043234119.1 mRNA downstream 20159 4155074 ~ 4274967 (+) False coro7
TU24811 other upstream 88233 3969515 ~ 4033526 (+) True G16672
TU24797 other upstream 136148 3947623 ~ 3985611 (+) True G16667
TU24749 other upstream 308456 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 596358 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 798705 3320820 ~ 3323054 (+) True G16541
TU25218 other downstream 222117 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 302373 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 323783 4458698 ~ 4459135 (+) False G16979
TU25277 other downstream 335817 4470732 ~ 4533298 (+) True G16978
TU25283 other downstream 335817 4470732 ~ 4486464 (+) False G16978

Expression Profile