RNA id: XM_043234153.1


Basic Information

Item Value
RNA id XM_043234153.1
length 2615
RNA type mRNA
GC content 0.38
exon number 8
gene id LOC122340833
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4470732 ~ 4479122 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATACTGGGCTACTACATGTAGATACACGTTGTGTATTTGGACCTGCTTGGTCTGGACTAATTTAACCAGTTGTTTCTAGCATCTGTGTCCTTTAAGATGAAGTTCATTTGTCTGTTTCTGCTGATTATTAGTGGAATCACAGATTCGAGATCAGAGCAGTATGAAGTAGTTGGTCCGGCTGATCCTGTTTTTGCTGTAGCTGGTGAAGATGTGATTCTGCCCTGTTCAGTCAAACCCAGCATCAGTGTTGAGGACATGAGAGTGGAGTGGTTTAGATTACATCTGAAAGACTCACGAGTGCATCTCTATGATGatcataaagacaaaaatagagATCAGAGTGAGTCCTACAGAGGGAGAACAGAACTGAATCATCAAGAACTACAGAGAGGAGATGCATCACTCAAACTCTCATCAGTCCGAGTCTCTGATGAAGGACTTTATAAGTGTTTTATTGAGTCCAAATCTTGGAGTGATGATGTTACTGTTAATGTCAGAGTTGAAGCTGTAGGACATCCTCCGGAGATCACTGTAGATGGGTTTGATCGTTCAGGAGGACTTCATCTACAGTGTGAATCTGAAGGCTGGTATCCTGAACCTGATCTTGAGTGGCTGAACAGAGAAGGAGTCAGTTTGAGTTCAGAAactacagagacacacagagaagcAGACAAATTCAGTGTGAAACACACCATCACTGTATATGAGAGAGACGACAAGATTCACTGCAGGATCAGACTGAAGCATCACATGCTGGAGACACAGATTATCACCTCAAGTAATATGTTTAATTCTTGGAGGACATCAGTCATCatgatttcagtttttgttgtgCTCAGTGTGATTGCTGTGATACTGATAGCTGTGTTTGCCCGAAAATACAAAGAACAAAGTCATTTACGGGATAGACACAGTCAACTAAAGAATGAACACAGTCAACTAAAGAAGGGACTACAATATGCTCTCAAATATTCAAGAACAtacaaggTGAATGTGATTCTGGATGCTGATACGGCTCATCCACGTCTCACTGTGTCTGATGATGGGAAACAAGTGAAAGATGGAAagaatcaaataaaagaaataaatggagGAAAAGACAGATTTGATCAAAATCTTGGTGTTCTTGGGAAGGATGGATTCTCCTCGAGGTGTTTCTACTTTGAGGTGCAGGTGAAGGGACAAACTGAGTGGGATTTAGGAGTGGCCAGAGAATCTGTGGACAAGAGCACAATGTATATGAGTCCTGAGGATGGATACTGGATCGTGGGACGGAGATACTGGAGATATCAAGCTCGTGATTCTTCTGATCACTCTATTTCTCTGAGTGTAAAGCCCCAGAGGGTCGGTGTTTTTGTGGATTATGAGAAGGGtctcatctttttttatgatgtgGAGTCCAGCTCTTATATCTACTCTTACACTGATCTgtcttttaataagaaactCTATCCACTTGTTTGTTTGGGGAATAAGTGGAATGAAAACTCCACACCACTGATCATCTGTGAAGATTATTAAGGAGATGAGTCAATGATCAACTAAAGTAAAAGTGTAACAGCAATAACTAGATCTGCAGTTAGCTTGAGAAAGCCTggacagaaatgttttaatgttttaaaaataatttacaggTTGTGAAAGTTTgattgtttttcagtttaaaataggTTTACAGTCTAAAAAGAAATAGATGCAGTAGAGGAGGGACTCAGGGTTGTTGTTTAGGTGTtactgggtggttgctaggatgttgctATACAGTTGCTTATGTACCCAGGTAGATCTCTAGGGTATCCAGAGTgattgctaaggtgttgctatgcagttgctagggtaaTCAGGGTagttgctaggctgttgctatgTTGTAGCTAAGGTACCCAAGTTGGTTACAGTATTCTAGACActatacagatagatagatagatagatgtaaaTCTATgggatttttatgatttttaatctTCAGTTTTCTGAAAACCATAAGTCTGATCAGTGAGAATAACAGCACCAAACCTCATATAAGTCTGAAGATCTGAGCTGAGTTTGGCAGTTATAGAGTTAAAGCTGTAGGAcagggttcctcaaatcttGTCTGGAGGACCACTGTCCTGAAGAGTTTAACTCTGATCAAACACACCGAAGCTACAAACAGAAGTCTTCAGGATCACTGGGAAATCACAGATACAGGTGATCTTTGAGTTTGAACTAAACTCTACTTGGCTTTTTATGTTTACTgtaatctttaaatattaaagacttCTGCTTTATTAACTGAAAAGACTTATATAAAGACTTTATAAACGAACATAAAAAATGgctagaatttttttaaaagatcgTAGTTTTACTTCAACATAATGTTTTGATCATGATTGAAGATCATGGAGATCATTCAGttactgttacttttgtttgttgataaatgttcttttttttcacaccaattatgttttcattgtttagtgttttttattaatttgatttcatattGATTTTGTACTTCATTGAATGTTTGTGTCTTTCCAACCCTGTTTtaattcttcttttgttttcaagaTACAAAGGAGATTTTTTACTGCCAAGCTCCTAAAAGAATTTTGACACTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25286 lncRNA upstream 8615 4459305 ~ 4462274 (+) True G16979
TU25245 lncRNA upstream 28581 4442016 ~ 4442308 (+) True G16958
TU25243 lncRNA upstream 29841 4411677 ~ 4441048 (+) True G16956
TU25242 lncRNA upstream 29841 4414421 ~ 4441048 (+) False G16956
TU25168 lncRNA upstream 153838 4316836 ~ 4317051 (+) True G16898
TU25304 lncRNA downstream 73263 4552385 ~ 4567182 (+) False G16982
TU25312 lncRNA downstream 77699 4556821 ~ 4614430 (+) True G16984
TU25294 lncRNA downstream 86382 4565504 ~ 4629082 (+) False G16982
TU25306 lncRNA downstream 86382 4565504 ~ 4629082 (+) False G16982
TU25295 lncRNA downstream 96650 4575772 ~ 4657048 (+) True G16982
XM_043234085.1 mRNA upstream 65505 4357076 ~ 4405384 (+) True LOC122340527
XM_043234149.1 mRNA upstream 119129 4329686 ~ 4351760 (+) True srl
XM_043234150.1 mRNA upstream 119129 4329686 ~ 4351760 (+) False srl
XM_043234191.1 mRNA upstream 142691 4318475 ~ 4328198 (+) False tfap4
XM_043231260.1 mRNA downstream 22930 4502052 ~ 4533340 (+) True LOC122333567
XM_043234134.1 mRNA downstream 180238 4659360 ~ 4668688 (+) True LOC122340567
XM_043235718.1 mRNA downstream 251306 4730428 ~ 4741427 (+) True LOC122341974
XM_043235482.1 mRNA downstream 265711 4744833 ~ 4761297 (+) True sh3gl1a
XM_043235483.1 mRNA downstream 265712 4744834 ~ 4761297 (+) False sh3gl1a
TU25288 other upstream 11754 4458698 ~ 4459135 (+) False G16979
TU25239 other upstream 32688 4437288 ~ 4438201 (+) True G16955
TU25218 other upstream 111585 4357032 ~ 4359304 (+) False LOC122340527
TU24811 other upstream 437363 3969515 ~ 4033526 (+) True G16672
TU24797 other upstream 485278 3947623 ~ 3985611 (+) True G16667
TU25278 other downstream 31615 4510737 ~ 4546567 (+) False G16978
TU25292 other downstream 426534 4905656 ~ 4906966 (+) True G16981
XR_006248137.1 other downstream 1077886 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 1117977 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1619079 6098201 ~ 6099152 (+) False fbxw9

Expression Profile