RNA id: XM_043234359.1


Basic Information

Item Value
RNA id XM_043234359.1
length 1702
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122341043
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3912009 ~ 3916436 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGTGTCCAAGCAAATACAACATCCAGCCTCCAATCACACTGACCTCTCCTTCGTGTAGgaGCTTAGAATATGGATAAGGCCGGAGAAGCTGATTTGGATGATTTGGAAACAGTGGAATATCTTGAGGACATGGAGGACATGGAGGATATAGAGGCTACGAAAGCCATTGAACCTTATGAATCTGCTCCACCCTACCCAGGCCATCCAGCAGAttacatagaaaaaaacatgaccCACAACCCAGGATACAATTCATCTCCATATCCAAACATTAATATGGCGTACACCTCGTACCCAGAGCCAGGAGTTAATCCAAACTATCAGGGAGCTTCCAATCAAGGGATATATCCTCAAATTAACAgtcCAAACCCTGGGATGTATCCTCAAGTGAACAGTCCTAACCCTGGGATGTATCCTCAAACTAACATTGTAACAACCACAGTGATGCTTCCCAGCCTGCGTGATTTACCCGCGCAGACCATGTGCCCTCACTGCAAGCACCGGGTGATCACTATAACAGATCACTACTCTGGACTCATGGCCTGGCTGGCCTGCGGCTGTCTCGCCCTCATCGGGTGCTGGCCGTGCTGTCTGGCACCTTTCTGGATGGATTCATGTAAAGATGTTGAGCATCGCTGCCCGAACTGCAACAAAATCTTGTCTTTCTACAAGCGCCTGTGATCTGCATTCAGACACGTCCCTCTTAAGTCTCTGATTTGAATGCATCTAATGGGTATAAGGCATTAAATTCCAGgtgatttcaaataataattaccaAATCCAACTATTACGACACATGTAGTAAGGCTAAATGATAAGTGTTTACattgtatgtaatatttattcaaatatttatgggtataaatattgtatgaaGTAGAATATTCtatcattgttttaaaattttacattcagacCTCCGCCTGTAGACCACAGTTATGTCTCGGATATATACGGTCTTAACTTTTTAATGTATCCTAAGTATGAAACTAAAGTTTAGCTTTGATGTCAGTCTGATGTTAAGGTTAATGCATGttaaatttgtaacatttacaaGCTCATGACGTAACACTGCATTGCTACGGCACCCAGCTCTCTTTACCTCTtagctttaattttattattagccTCTCTTGCATGAAAGGTTTCGGGGGGTTAACAactgttattatcattatgcGTCGCTCGGTAGATGGTTCAAAGAAATTAAACTTAATATAGTGAAGTCAATTGTCTGTAGAATGAGTTAATGAAGCTTATTGGATTTAACAGCTCAACAGTCATTTTGATTCTGTCCGATTACCTGCTGTTCGGTTTTCTGCAATTTAGGCTCTTTGGCAAATTAACAATTTGATCACATTCGCATTATGAACTCTTCATTTGCGTTCACAGGGAAGTCAGCGAATGTTTCTAGATTCGAAAGGGGCGAAATAGGCTTGAAATGTGCTTTGGGCTTTGCGGAAATGTGCAACAACCGTTTTAATGAGGGTTCACTGGTAAACTTCAGTCTagtttatacattattttgctCAATAAAATCAAGCAGTGAGGATCATTTGCCAGCAAAGTAGTATCTAAAATCATTTTAcgttctatatttaaaaataaaatctacagCTGTGTGCAATCTACACAAGAACCAAGAGAGGGCGTCATTTACTACTTTAAAAAGCACACGGAAGCAAATGGTTaccatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24780 lncRNA upstream 29304 3881900 ~ 3882705 (+) True G16651
TU24766 lncRNA upstream 50724 3838870 ~ 3861285 (+) True G16639
TU24725 lncRNA upstream 90582 3815723 ~ 3821427 (+) True G16619
TU24721 lncRNA upstream 96782 3800652 ~ 3815227 (+) False G16619
TU24730 lncRNA upstream 96782 3800652 ~ 3815227 (+) False G16619
TU24793 lncRNA downstream 28165 3944601 ~ 3945039 (+) True G16664
XR_006250423.1 lncRNA downstream 71090 3987526 ~ 3991553 (+) True LOC122341104
TU24809 lncRNA downstream 86299 4002735 ~ 4007765 (+) False G16672
TU24804 lncRNA downstream 93144 4009580 ~ 4022148 (+) False G16672
TU24816 lncRNA downstream 102097 4018533 ~ 4023201 (+) True G16675
XM_043235966.1 mRNA upstream 10560 3895268 ~ 3901449 (+) True sstr5
XM_043232053.1 mRNA upstream 34142 3875326 ~ 3877867 (+) True mrps7
XM_043235099.1 mRNA upstream 80690 3829649 ~ 3831319 (+) True tmem220
XM_043229612.1 mRNA upstream 98665 3809170 ~ 3813344 (+) False LOC122332297
XM_043234139.1 mRNA downstream 11912 3928348 ~ 3938422 (+) True LOC122340641
XM_043231164.1 mRNA downstream 31396 3947832 ~ 3950655 (+) True LOC122333504
XM_043234096.1 mRNA downstream 205323 4121759 ~ 4134915 (+) True cfap70
XM_043234236.1 mRNA downstream 219434 4135870 ~ 4145083 (+) True hmox2b
XM_043234242.1 mRNA downstream 220043 4136479 ~ 4145083 (+) False hmox2b
TU24749 other upstream 98706 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 386608 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 588955 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 628353 3282990 ~ 3283656 (+) True G16530
TU24319 other upstream 1265259 2641212 ~ 2646750 (+) False sumo2b
TU24797 other downstream 31187 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 53079 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 440596 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 520852 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 542262 4458698 ~ 4459135 (+) False G16979

Expression Profile