RNA id: XM_043234573.1


Basic Information

Item Value
RNA id XM_043234573.1
length 5033
RNA type mRNA
GC content 0.51
exon number 16
gene id kcnh6a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11645898 ~ 11676327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTCAAAAGTGACAGCTGTGTCCACTGCCTCTTCTGTGAACGCAAGCTACCATTATTCCACAATGAGCTTCATCAGCCTCTGAGGGGTCGGGCGTCCCTGTGCCGTCTCGGCTTGTTGctctctttttgtttcagaACACGTTACGACCGATTTTGCAGAGCTCGTCGCTGCGTTACCATCCCCGCGTTACCATCTGACGGCGCGAGAGTTTCGAGTCTCCAAACTGCAAGCCATTCGTTTCCATTCAAACGcgcctttttttaatttgcatttcagCTCGGCGGCTTTTCACTTTCTCGAGGATCCCACTGGCGTTCTCGTGTcgtttttgtttgatttgttgGCCGTAAACACTTGTTTCCTTCACTATGCGTTCGAGTTCTAGACTGCGTTCTTTTGTCTTGCTCGCTCGTCCTTGAATAAGACGGAAACCCAGAATAAAAAGGCTTCTTAATCTGTCCACGCGCGAAAATGCCTGTACGCCGGGGACACGTCGCTCTCCAGAACACCTATCTGGACACCATCATTAGGAAATTCGACGGGCAAAATCGTAAATTCCTGATTGCCAATGCCCAGATGAAGAACTGTGGGATCATCTACTGCAATGAGGGCTTCTGCCAGATGTTTGGTTTCTCTCGGGCGGAGATCATGCAGCAGTCCTGTATGTGTCAGTTCCTGGTGGGGCCGGGCACTATGAAGAGCGCCCTGGCACAGCTGGCACAGGCCCTGCTCGGCTCAGAGGAACGCAAGGTGGAGATCCTGTACTACTCCAAGGAAGGGACATGTAGGCCGTGTTTGGTTGATGTCGTTCCAGTAAAGAATGAGGAAGGAGTCGTAATCATGTTCATCCTAAACTTCCAGGAGCTGTTAGACCCGTCCACGAAAAAAGGTGGCATCAAACAGCGAGTGGCAAACAGCTGGCTGCAGGCAGgtCAGAAACGTAAGATGAGGCTGCGAATGCCCTCTCTCCGTGTCAGACGACAGCCGTCCCTCCCTAAGGACCACTTTGAGGGGGTGGTGGTGGACTACTTACAGCCCTCTCATGAGGAGGTGGCCATGAAAGACCTCCAGATGTCTCCAGACAGCTGCTTGAAATCAGAAACGCAGGCCCTGATTCAGCAGACCCCCTCCACGTGCAGCTTCTCCTCCCCTCTGCCCCGGGCCTCGGACCGGCTCGAGCCCAGCGGAAACCATCCTCTCAAAAACAGCCTCTCCAGAGAGAGCGTCCACAGCCTGCGCCGGGCCTCCTCGCTCCACGACATCGACGGGATGAGGGACCAGTGGAGCGatCTGAAGCCCAGTAACTTGAACTCCACCTCAGACTCGGATCTGATGCGGCACAGGGCTATTGGCCGCATCCCTCAGGTGACGATATCCTTCGGCTCAGACCGCCTCAGACCGCCTTCCCCCACAGAGATCGAGATCATAGCACCCAGCAAGATTAAAGACCGTACGCAGAACGTCTCGGAAAAGGTCACTCAAGTCACGCAGGTACTGTCGCTCGGAGCAGATGTGCTTCCTGAGTACAAGCTTCAAGCTCCACGCATCCACAAGTGGACCATCCTCCACTACAGCCCGTTCAAGGCAGTATGGGATTGGATCATCCTGCTTCTGGTGCTCTACACGGCCGTCTTCACGCCCTACTCGGCCGCCTTCCTCCTCAACGAGCAGGAGGACGAAAGAAGGCTCAAATGCGGCTACACCTGCAACCCCCTTAACGTCGTGGACCTGGTGGTGGATGTCATGTTCATAATCGACATCCTCATCAATTTCAGGACCACTTACGTCAACCACAATGACGAGGTGGTCAGCAATCCCACCCGCATCGCTCAGCACTACTTCAAGGGCTGGTTCCTCATAGACATCGTGGCTGCCATTCCTTTCGACCTGCTCATTTTCAGATCAGGGTCAGATGAGCCTCAAACCACGACTCTGATTGGTCTTCTGAAGACTGCGCGGCTCCTGAGATTGGTGCGAGTAGCGAGAAAACTGGACCGTTACTCTGAGTACGGCGCCGCTGTGCTCTTCCTCCTCATGTGCACCTTTGCTCTCATCGCTCACTGGCTGGCATGCATCTGGTACGCCATCGGCAACGTGGAGCGCACCAGCTCTGCCCGTATTGGAGGCATGAAGATCGGCTGGCTGGACAACCTGGCTGACCAGATTGGCAAACGTTACAACGACAGTGATTCCTTCTCTGGCCCCTCCATCAAGGATAAATATGTAACTGCACTGTACTTCACCTTCAGTAGTTTGACCAGCGTGGGATTCGGAAACGTCTCTCCCAACACCAACCCTGAGAAGATTTTCTCCATTTGTGTCATGCTCATTGGCTCCCTGATGTATGCCAGTATCTTTGGCAACGTGTCAGCTATAATTCAGAGGTTGTATTCAGGCACAGCTCGCTATCACACTCAGATGCTGCGTGTGAAAGAGTTCATCAGGTTTCATCAGATCCCAGGAGGCCTTCGACAACGACTAGAAGAGTACTTCCAGCACGCCTGGTCCTACACTAACGGCATTGACATGAATGCTGTGTTGAAGGGTTTTCCGGAGTGTCTGCAGGCAGATATCTGTCTGCATCTGAACCGCAGTCTGCTGCAGAACTGCAAGGCTTTCCGGGGGGCGAGCAAGGGCTGTCTGCGGGCTCTGGCCATGCGTTTTAAGACCACTCATGCCCCACCCGGTGACACTCTGGTGCACAGTGGAGATGTATTAACCGCTCTGTATTTCATCTCCCGTGGCTCCATAGAGATCCTCAGAGAGGATGTGGTCGTGGCCATTTTAGGAAAGAACGATATTTTTGGGGAGCACATCACTCTATATGCCAGGCCGGGGAAGTCAAGTGCAGATGTGAGGGCTCTGACGTACTGTGACTTGCACAAGATCCTCAGAGATGACATGCTGGAAGTGTTGGACATGTACCCTGATTTTGCCGACAGTTTCTGGAGTAACCTAGAGATCACATTTAACCTTCGAGATGCAGACAGAATCATGCATGCAACCCCAAGCGAGGACTCAGACTGTGGGTACCGTCGACCCAGGCATCGGAGGAACCCCTTACAGAGAAATCGACCCGATGGAATGGACCGAGATGGGATGGACACATACCCCGTCCAGTCCTGTTCGCCTGTGGGCAACCACCGGGGGGCAATACCGCTCTCACACTGGGAAGAGTTATGCAGCAATACCAGTGCTGCTTCCTTGTCCAGTGAGGAGGACATGAAGCCCCTGGTATCTGGCCGAGGGGAAATGTACTCGCCAGGGACAGAGATGCAAGAATACTCCCCTTCTGCAGTCAGCCTCATGCCCCCCGGCAACAGCACAGCTTCTGCCATGGGAGGACCACTGGGAGGGACACATCCATACACAGCGTCTCCTCTGAACGTGTCGGGGTTATACAGTTATTTGCCGGACCGCAGGGCCAGTCAGTACTCAGAGGGTCAGAGGCGTTCCTCTGCGGTGCAGGCCTGCTACCACCATCACAGCCCCTGTGTGGAGGACAGACCGAGTCAGCTGCAGGCGCGTCTGGAGCTGCTGCAGTCGCAGCTCAACAGACTGGAGACCAGGATGACGGCTGATATAAATGTGATCCTGCAGTTGCTGCAGAGGCAGATGGCACCTGTCCCCCCTGCCTACAGCGCAGTTTCCCCTGAACCGCTGGTCCACCCCGCTCACCCCACCAGCCTGTACTCCTCAGCAACACACAGCACTATGCCATCATTACAGATCAACGACAGTTCCTCACCCGGCAAGAGCCCTGATTTGGACAGCTTCAAGGAGAAGTCTCCAGACTCTTTGTCCAGTGGGATCCATTTAACAGTTGCCTCCAATGACACCATGTCCATGTCCCCAGAGACAGAGCTGGCTGTGCCCACGGGACTGAATCCCCCCCGAGAGCCTCATCTACAGCCGCCGGGACAGCTGTGCAGAAGCCTGCGCTTCCCATCGCTGCCGGACAGTCTGGAGAGTCCGAGCACGCTGGAGGGATCCCCAGAAATCCAGAGGCACGTGTCCGATCCAGTCTTACCTGGAAGCTAGAGGCCAAAAACAGACTACTCTCCGTTGTGAGACGCATACGtgcttttccttttcaaatGGCTCAATAATGCACTTCAGCAATCAAATGTATTCATGTTACTCATTAGTTAAAAGGCGTCCAGTAGAGAAACCGGTGACTGTAGATTTCTCTGAATCTCTGAGGTGTTTTGTCTCATATCCCTTCTCCTTCAGAGCAggatttttttcctctgatgCGAGAGTATTTGGTAACACCTCTCGAACCACTTTTGTGTTATTGAATATGAAGAGAAGCACAGTGGGCAATAAAGACAAAGTCAAAGACTCAAAGAGAAGACACTACGTTATGATCACCCGCCTcaatcatttaataattgtaCATATTTGTTGGTCTGTTTGAGATTTGTCATTATACACTAAACTACATCTTGTCTTCTCACGTCAGAGGTTGGATCCTCTGAGAAAAATGACACATATACCTGGGCTTTCAATGTATAATGAATTGCTAGTGTGTTCTGATACtgatatatatactttttttttcaggttagGTGTTTGACCCAAATCTAATGTATTAGCCTACTACATCAAATGACGTTATGACTGACACAAAAAATGAAGCTTTGTATATTTGGATTCATAGTTTCCAAATAAGCATGAATTCAGGGTTATGATATTTCTCACTGAAGTGGTTGTTTTAACTGCTGCCGGGtggtgtgactgtgtgtgtgtgtgtctgtgtgtgatctTTTGGAAATGTGATCAATTTGGAAGAGAAGACTACTCAATCTTGACGTTCTGATTGGAGAAAGTGAaggactgttttttttgtaaattacttttTGAGATTAAATCGGTGTAAAGTTTGTTTTACCTCTGCGGTGTAAGCAGATGAATGTATGTAAAATGATTGTCAGCCTTTATTGGATTGAAGGTTTCCAAAAGCacacgtttattattattactattattttatagatttaatgttatttataaaggAGTACTAATGTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04905 KCNH2, KV11.1; potassium voltage-gated channel Eag-related subfamily H member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28478 lncRNA downstream 231593 11411985 ~ 11414305 (-) False syt17
TU28479 lncRNA downstream 231593 11413407 ~ 11414305 (-) False syt17
TU28475 lncRNA downstream 235182 11410335 ~ 11410716 (-) True G19117
TU28460 lncRNA downstream 310098 11334983 ~ 11335800 (-) True G19108
TU28853 lncRNA upstream 93395 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 167687 11844014 ~ 11844199 (-) True G19381
TU28861 lncRNA upstream 177421 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA upstream 177421 11853748 ~ 11880082 (-) False G19383
TU28871 lncRNA upstream 177421 11853748 ~ 11880959 (-) False G19383
XM_043235527.1 mRNA downstream 5841 11633421 ~ 11640057 (-) True ccdc47
XM_043234666.1 mRNA downstream 43517 11597240 ~ 11602381 (-) True moto
XM_043235466.1 mRNA downstream 194455 11449629 ~ 11451443 (-) True LOC122341820
XM_043235463.1 mRNA downstream 198195 11445525 ~ 11447703 (-) True apnl
XM_043235464.1 mRNA downstream 198277 11445525 ~ 11447621 (-) False apnl
XM_043228279.1 mRNA upstream 5023 11681350 ~ 11688119 (-) True LOC122330909
XM_043234643.1 mRNA upstream 17945 11694272 ~ 11714719 (-) True map3k3
XM_043235253.1 mRNA upstream 39397 11715724 ~ 11728001 (-) True limd2
XM_043235421.1 mRNA upstream 55666 11731993 ~ 11739714 (-) True ddx42
XM_043235423.1 mRNA upstream 55666 11731993 ~ 11738368 (-) False ddx42
XR_006248663.1 other downstream 581315 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 865702 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 866663 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 1249557 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 2182993 9426572 ~ 9462905 (-) True G18433
XR_006250462.1 other upstream 17945 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 36493 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 39395 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 39395 11715722 ~ 11727975 (-) False limd2
TU28832 other upstream 39395 11715722 ~ 11727975 (-) False limd2

Expression Profile