RNA id: XM_043234624.1


Basic Information

Item Value
RNA id XM_043234624.1
length 2076
RNA type mRNA
GC content 0.46
exon number 10
gene id aldh3b1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13103276 ~ 13107847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGGTTTTTCGGGCTGCAGTACGACTTAAAGATACCAAACTCGACAAACTTGAattttctgaatgaaacgcGAAAACCCGGAACTCATCTTCACTCTTCACGTgttacagtgaaaaaaacattggGCTGTTCAAGTATTCTTGCTATGGAGGGCCAGAAACAGGTGCTGGAGAGGCTGCGGGGCTCTTTCCGCTCGGGTGTGACCCTTCCTGTCCACTTCCGGTTGACTCAGCTGCAGGCCATGATGTCGCTGTTTGAAGACAATGAAACCCAGATTTTGCAGGCAATGCATGACGACCTTGCTAAGCCCAAGTTTGAGGCAGTGCTGTCAGAGATTGATATAGTGGTGAATGACCTTTGCTACACCATCAGCAACCTGCAAACCTGGATGCAGCCCACTTATGTGGGCACGAACTTGGCAACAAAGCTGGATGACTGTTTTGTACGCAGGGAGCCATTAGGTGTTGTTTTGATTATTGGAGCATGGAACTATCCTCTTCAGCTAATTTTGGCACCTTTGATTGGTGCGATTGCTGCAGgTAACTGTGCTATTCTGAAGCCATCGGAAATAAGTCGAGCAACCGAAAAGCTTCTTGCTGAACTCATTCCTAAGTACCTGTCCCAGGACTGTTATGCAGTCATTTGCGGTGGAGCAGAAGAGACCAAGACATTGCTGGAGAATAGATTTGATCATATCTTCTACACAGGATCGCAGTCGGTGGCTCGTTGCATCCTGCAGGCCGCAGCGGTGCACCTCACCCCAGTTACTCTGGAGCTGGGCGGAAAGTGCCCCTGTTTGATATATGGCCGGCTAGACATGAGAGCTGCTGCAAAGAGGCTGGTGTGGGCCAAGTTTTTCAATGCCGGGCAGAGCTGTGTAGCTCCAGATTATGTTTTATGCACTGCTGAGACGAGAGACATGCTGCTACCTCTTATAAAAGAGGCTCTAGAGGGTTTCTACGGATCCGAGCCCCAGCAAAGCCAAGACATGGGTCGTATTGTGACAGACAGGCACTGGGACCGACTGGTTGAGCTGCTAAAAAAGTCTAAGGGAAAGATAGTGATAGGAGGAGAGAGTGACAAAAAGGCCAAGTACATTGCCCCCACTGTGCTCGTTGATGTCAAGGAGTCAGACGCTTTAATGCAGGAGGAGATTTTTGGCCCCATCCTCCCCATTCTGACCATCAAGTCTCTCGATGAAGGAATCGATTTCATGAACGAGAGGGAAAAGCCGCTGGCGCTCTACGCTTTCTCTGATGAGTCTCaggTTGTCACTACAGTTCTTGAGAGGACCAGCAGCGGAGGCTTCTGTTCAAATGATGGAATAGTTCACATGACCCTCTCTGGATTACCCTTCGGAGGAGTTGGTGCCAGTGGGATGGGTAACTACCACGGTCGCTGGGGCTTTGAGACGTTCAGTCACAAGCGTGGCTGCATGCTGAGGGGCTGGGCTCTGGAGCGCGTCAACGTGCTGCGCTACCCCCCCTATAAAGAAAGCAATCTCAGCTGGCTGCGCTGGGCCACCACCGCCAAGAAGAAGGGGTGGGCAGGATGTTCTGTTATGTGACGCTCGCATTGAGGAtggccaatttttttttttttttttttcaattgcgaTATCATGCAAAACACCACCAGAGGTCAGTATTGAGAAAGGTTGCTTCTTCTGGATACTTCTGTTGTGAGAGAAAAGAGGCCATTTActagcaaaattattttaactacCATTGTTCAAATACACTACTCATGGGCTTATTTgcatctgaattaaaaaaaatccagtctttcataaaacaaattatcCATACTTGTTATTGAACACTAAGGTGAAAAGCATTACATTATTTAGTAAGGTAATGTAGCATCTTTACTGTTACAATTGAATTACTGCTAccataaacatgtttttctatAGCAGTAGCTCGTACTATTTGAGGGTTATTCtattgaaatatgaaatatatcgAAAAATCTCAAGTACCATTTCTAGTTTGAGTTGTATACTTGTCTGATTTTTATCTTCAGAGTtgagtacaaaaataaaatgagacaaACATGTTTGCCCCCGCAGAAAA

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG:

id description
K00129 ALDH3; aldehyde dehydrogenase (NAD(P)+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29204 lncRNA upstream 6422 13005810 ~ 13096854 (+) True G19629
TU29201 lncRNA upstream 10636 13088254 ~ 13092640 (+) True G19626
TU29203 lncRNA upstream 21122 13077933 ~ 13082154 (+) True G19628
TU29199 lncRNA upstream 26582 13072133 ~ 13076694 (+) True G19624
TU29211 lncRNA upstream 30677 13061117 ~ 13072599 (+) True G19636
TU29256 lncRNA downstream 4673 13112520 ~ 13114849 (+) False si:dkey-204f11.64
TU29387 lncRNA downstream 12786 13120633 ~ 13214815 (+) True G19711
XR_006248092.1 lncRNA downstream 32435 13140282 ~ 13152319 (+) True LOC122330830
XR_006250467.1 lncRNA downstream 64192 13172039 ~ 13173224 (+) True LOC122341519
TU29398 lncRNA downstream 118712 13226559 ~ 13227185 (+) True G19722
XM_043229415.1 mRNA upstream 128649 12972477 ~ 12974627 (+) True LOC122332118
XM_043229474.1 mRNA upstream 203060 12895326 ~ 12900216 (+) True LOC122332168
XM_043235716.1 mRNA upstream 331094 12770572 ~ 12772182 (+) True alkbh7
XM_043228192.1 mRNA upstream 423519 12678396 ~ 12679757 (+) True ier2a
XM_043225889.1 mRNA upstream 426613 12662299 ~ 12676663 (+) False LOC122329583
XM_043234628.1 mRNA downstream 4630 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234772.1 mRNA downstream 8184 13116031 ~ 13129608 (+) False carm1
XM_043234771.1 mRNA downstream 8186 13116033 ~ 13129608 (+) True carm1
XM_043234775.1 mRNA downstream 26823 13134670 ~ 13136750 (+) False timm29
XM_043234776.1 mRNA downstream 27033 13134880 ~ 13136750 (+) True timm29
TU29192 other upstream 115363 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 215215 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 574473 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 589555 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 589555 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 590727 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 805776 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 941643 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 1010620 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1147643 14255490 ~ 14267791 (+) False abcc1

Expression Profile