RNA id: XM_043234627.1


Basic Information

Item Value
RNA id XM_043234627.1
length 1977
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC122341259
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13107831 ~ 13111379 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATCTCTTTCTTCATTAGAGGCTCTCTGGCTTCCCTATCAAGCTGCTGAATATCACATCCGGGTTAGTAGGGGTCGCGTGAGGGTTGCTCAACAGAAACATGTTGTTGCGtAGAGTCTTACAATGTGGAGTTCCTGCACTCAAAGTCAGTCGGTCCATTCATCAGAGCGCGCCATGGAGAAGTCCACTTATACCAATAGTTGTGGAGCAGACGGGCAGAGGAGAGCGTGCGTACGACATCTACTCAAGGCTGCTTCGAGAGAGAATCATTTGTGTTATGGGTCCAATCGATGACTCTGTAGCTTCCCTAGTTATCGCTCAGCTGCTCTTTCTCCAGTCTGAGAGCAACAACAAGCCCATACACATGTACATCAACAGTCCTGGGGGTGTGGTCACGGCTGGACTCGCGATCTATGACACTATGCAGTACATCTTAAATCCCATATCTACGTGGTGTGTGGGTCAGGCCGCCAGTATGGGCAGCCTGCTTCTGGCCGCAGGAACCGCAGGCATGAGGCATTCCCTGCCCAATGCCCGAATCATGGTGCACCAGCCCTCTGGTGGAGCAAGGGGGCAAGCAACAGATATTGCCATACAGGCTGAGGAGATTCTCAAGCTTAAAAGACAGATCAACAACATCTATTGTAAACACACGGGGCAGCTTTTGGAGACTATAGAGAGCGTGATGGAGAGAGACCGCTACATGAGCCCAATGGAAGCGCAGGATTTCGGGATCATTGACAAAGTCCTGGTTCATCCACCACAGGCTGGGCAGGATGAGCCAGAACTTATTCAGAAAGAGCCCACAAGCCCTGCAAGCGCATCCACCTCCCCTCAACCTCAAGCCTCTGAGCCGGGTCAATCCGGAAACAACCTTGCCTCCTCATACAAGCCCGAGCCCTGAAATAGACTCCCAGCAGGAGCGAGTGAACTACTGCATCACTGGTTCAGTGTCTGTTTTGGCAGGTGTTTGAAGGGACGGTCACCAGCTCACACGTCATATCTGAACCTTGTGACCttctttttgtacctttttttttttttttttttttttaaatctaagcTTAGTCCTGAGACACTAATGGAATCTGGGCTTTAAAGATGCAAATGTAAAGATACTCAGTCTAGGCCTTATATTTGTATACTGTACAAATATAGGTATCTTTAGCAAGAATTAGGTTCATGGGAACATGAGAACACCGGGTTTGAAGCCTATTATTTTGATGGagtgtgtgttataaatgtgCCCGTTGTTTAATATAATCCAGgtcaaaacaatttaaatccAGAGATTTTATagataaatattcaaataaataattggctAATTAAGGGTGGTTTTCCTgtctttttaacttttcaaTCTAAATAATTTCCcaaaagtcaaaaacacttGGGACtgcatgaaataatataaaaaaaaaattcacaagtACGCATTGATTTGATAAGCAGTTCCAAAatgtctatttcaaataaacagtgTTCTTTGGAGCTTTCTATTCAACaagaatcattaaaaaaatggacCATGAGTTCTGCAAGTATAAAACAGCACAGCTTAACATGCTTATTATCTGTATATTAATATCTGtgtattagaaggatttctgaaggatcatgtgacgctgcaGCCTAGAGCAATAGAATGAATTAGATTTTAACATATactcaaatagaaaacaaaaacagttgtAATAATcatactattttactgtatttttgaccaaattaaTCCACGCTTTATGAGCATAGGATaccttttgaaaatatttctacaAACCCCAAGCTATTAAAACAGTAATGTATGCCAAAATAATTTACACAATATGATGTATGTGATGCTATTTCCCCATAGTCCATGGTTGGTATGGAAACCagattgtgtgtttttgagctgtttcttaaaccaaaaaaaaaaatgcatttataataatataaataaataatcaaacactTGTTTTCTGCGGGGGCAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29374 lncRNA downstream 16679 13090671 ~ 13091152 (-) True G19703
XR_006248461.1 lncRNA downstream 35003 13072560 ~ 13072828 (-) True LOC122332187
TU29260 lncRNA downstream 204921 12900781 ~ 12902910 (-) True G19672
TU29337 lncRNA downstream 220877 12864310 ~ 12886954 (-) False G19677
TU29406 lncRNA upstream 14142 13125521 ~ 13129608 (-) True G19726
TU29519 lncRNA upstream 246200 13357579 ~ 13357789 (-) True G19811
TU29594 lncRNA upstream 522180 13633559 ~ 13633785 (-) True G19872
TU29639 lncRNA upstream 674630 13786009 ~ 13792602 (-) True gng13b
TU29640 lncRNA upstream 674630 13786009 ~ 13792233 (-) False gng13b
XM_043229457.1 mRNA downstream 24097 13083209 ~ 13083734 (-) True LOC122332149
XM_043229414.1 mRNA downstream 127738 12974708 ~ 12980093 (-) True LOC122332086
XM_043228204.1 mRNA downstream 344741 12681990 ~ 12763090 (-) True cacna1aa
XM_043225869.1 mRNA downstream 446088 12571028 ~ 12661743 (-) False LOC122329559
XM_043234774.1 mRNA upstream 19557 13130936 ~ 13134638 (-) False yipf2
XM_043234773.1 mRNA upstream 19557 13130936 ~ 13134638 (-) True yipf2
XM_043234946.1 mRNA upstream 61972 13173351 ~ 13227138 (-) True tnrc6c1
XM_043235884.1 mRNA upstream 173997 13285376 ~ 13348706 (-) True sept9a
XM_043235888.1 mRNA upstream 173997 13285376 ~ 13345902 (-) False sept9a
unassigned_transcript_285 other downstream 7187 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 14985 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 20564 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 22865 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_281 other downstream 27210 13080070 ~ 13080621 (-) True LOC122332138
TU29676 other upstream 693989 13805368 ~ 13805978 (-) True G19933
TU30091 other upstream 1323771 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 1324836 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 1324836 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 1324836 14436215 ~ 14439541 (-) False mlx

Expression Profile