RNA id: XM_043234630.1


Basic Information

Item Value
RNA id XM_043234630.1
length 7663
RNA type mRNA
GC content 0.43
exon number 25
gene id scn4ab
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21899306 ~ 21918705 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACAGTTGGAGTAACATTCTTCAATTTTGTAGAGAGAAATTGTGGACAAGGCAGCAATGCCTAAGCGAAAGATAAACCTGATGGAGGTTTGGCGCAGGAATCGTGCTGCACACCCAAACAGAGCTAAGAACTTAAAACTATGGCCACATCAACTGGCACAACTGAGAGACCCCGAAGTGGTGGCAGCCGTCCTTCAGCAGAATGTCAAGATGGCGCGACTACTCCCTCCCATAGGCACCGATGTGTTCCGCCCCTTTACTTTGGAGTCGCTCGCCGAGATCGAGCGGCGGATGGCAGAGGAGGCCGCCGAGCAGGAGCAGATGAAGGCCCAGACTACCGAGGTACCTGAGGAGGATCTACCCAAACCCAGCAGTGATTTGGAAGCAGGAAAGGCCCTGCCGTTCATCTACGGAGACCCTCCGCCAAATCTCCTCAACGTTCCCCTGGAAGAGTTAGATCCATTctacaaagcaaaaaaaacgTTCATCGTGGTCACCAAAGGCAATACAATATACCGATTCAATGCTGAACCTGCATGCTACGTTCTCAGTCCATTCAGTCCTGTTCGACGTGTGGCCATCAGAATACTCATACATTCATTATTTAGCATGTTCATCATGTTAACCATCTTGTCAAACTGCGTTTTCATGACGATGGGTGACCCTCCAGCATGGAGTAAAACAGTAGAATATGTTTTCACTGGCATCTACACCTTTGAGGCGCTTGTGAAGGTGCTGTCCAGAGGCTTCTGCATTGGTGATTTCACATTCCTGCGAGATCCGTGGAATTGGCTGGATTTTATGGTCATCACCATGGCGTACCTCACAGAGTTTGTGGACTTGGGGAATATATCCGCTCTAAGGACTTTCCGTGTTCTTCGGGCCCTGAAGACAATAACTGTAATTCCAGGTCTTAAAACCATCGTTGGCGCCCTGATTCAGTCGGTGAAGAAATTGGCGGACGTCATGATCCTCACTGTCTTCTGTCTCAGCGTGTTTGCTCTCATTGGCCTGCAACTGTTCATGGGAAATTTGAGGCAAAAGTGTGTCCGGTCTTTTGACTGGAGCAACAGTGATAACCTCACCATGCTTTTCAACCACACAGACATCAACGGCACTGAAGCCAACAACACATTCAACTTTCAGGAATATATTAACAATCCAGAAAACTACTACTATGTGCCTGGTCACATCGATCCTTTGCTTTGTGGGAACAGCTCTGATGCAGgGAAATGCCCCGAGGGATACACATGCATGAAAGCTGGCCAAAACCCAAATTACGGCTACACTAGTTATGACAACTTTGGGTGGGCTTTCTTAGCCCTTTTTCGGCTAATGACTCAAGATTTCTGGGAGAACTTGTTTCAGTTGACGCTCCGTGCAGCAGGGAAGACGTATATGATCTTCTTTGTAGTCATCATCTTCTTGGGTTCGTTCTACCTCATCAATCTGATTCTGGCTGTGGTGGCTATGGCATATGCTGAACAGAATGAAGCAACCATTGCAGAAGCTAAAGAAAAGGAGGAAGAGTATGCAAAAATCCTGGAACAGCTCAAGAAACAAGCTGAGCAGCAGAAAAACAACATGGTAAATGGCAGTAAGACATCATTATCCAGCAAGAAGAAAGGTGATGATGACCAAATGCAGAACGACTATGACGGGATTGCATTGAAGCCCCTCTCAAAGTCGAATGGATCCAAAGGTAGCATGAATTACTTGGAAGTCCCTGATTCGCAGATGAGAAAACCGAGTGCAGTGATCACCACAGACAATACTACAGATGAGCTGGAGGATATTGAAAGGCCGTGTCCTCCATGCTGGTATAAGTTTGCTGACATTTTCCTGAAATGGAATTGCTGCGTGCCATGGGTGAAATTCAAGAAGTTTATCTACCTAATTGTAATGGACCCGTTTGTGGATCTGGGAATTACGATCTGCATTGTGCTCAACACTGTGTTCATGGCTATGGAGCACTATCCTATGACTCCAGATTTCGATGAAATATTGGCAGTGGGAAATCTGGTTTTCACAGGTATCTTCACAGCCGAGATGGTGCTAAAACTTATTGCACTGGACCCATATTATTACTTTCAAGTTGGCTGGAACATTTTTGACAGCATAATTGTTACCATGAGCCTGGTGGAGTTGGGCCTAGCCAATGTTCAGGGCCTGTCTGTGCTGAGGTCTTTCCGTTTGATGCGTGTGTTCAAGCTGGCAAAATCTTGGCCAACCCTAAACATGTTGATAAAGATCATCGGTAATTCTGTAGGTGCCCTTGGAAACTTGACCCTCGTCCTGGCCATTATTGTCTTCATCTTTGCTGTGGTGGGGATGCAGCTTTTTGGAAAAAGCTACAAGGACTGTGTGTGTAAGATCTCGGAGAATTGCCAGCTCCCTCGCTGGCACATGACAGATTTCTTTCACTCATTTCTCATCATCTTTCGTGTTCTGTGTGGGGAATGGATTGAAACAATGTGGGACTGCATGGAAGTGGCTGGCCAAGGCATGTGCATCGTCGTCTTCATGATGGTCATGATCATAGGAAACCTAGTGGTGTTGAACCTCTTCCTGGCTTTGCTGCTCAGCTCCTTCAGCGGAGACAACCTGTCAGCGTCAGATGATGATGGGGAGATGAACAATCTGCAGATTGCCGTTGCCAGAATGACAAGAGCCATTGACTGGGTAAAGGCCTTTGTTATCGGACATTTGCGACAATGTCTGGGCCTGAAGCCAAAGGAAGAGAGCGTGAAAGCAAACGAAGAGAGCGATTCTAAAATGGCCACCATGAATTCCAGTCTGTCCGTTGTCAAAGTGCCTATAGCCAATGGAGAAtcggatgatgatgatgacaacTGCTCTTCTGAGGATGAAGACAAAGAGGATATCGATAAAAATACTAAAAAGAAAGCTGGAGATGAATCATCAACCTGCAGCACAGTGGACAAACCTCCAGAGGTAGAAGAGGTGgtagaagaggaagaagaggactCCACCATCCCTGAGGATTGCTACACAGAGAACTGCATCAGGCGATGTCCTTGCTTGGAGCTTGACGTTACCCAAGGTAAAGGGAAGACATGGTGGAATTTACGTAAAACCTGCTACGCCATTGTGGAGCACAGCTATTTTGAAaccttcatcatcttcatgaTTCTCCTCAGCAGTGGAGCATTAgcaTTTGAGGACATATACATTGAACAACGAAGAATGATTAAAATCATCCTTGAATATGCAGATCAGGTCTTCACTTATGTGTTTGTCATTGAGATGCTTCTGAAATGGGTAGCCTACGGCTTCAAGGTCTATTTCACAAACGCATGGTGTTGGCTGGACTTCCTCATTGTTGATGTGTCCCTGATCAGTTTGACTGCAAATATCTTAGGCTACTCTGAACTGGGGGCCATTAAGTCTCTCAGGACTTTGAGAGCACTGAGACCTCTTCGTGCTCTCTCCAGGTTTGAAGGAATGCGGGTGGTGGTGAACGCTCTGGTGGGGGCCATTCCATCCATCTTCAATGTTCTCCTGGTCTGTCTGATCTTTTGGCTAATCTTTAGCATCATGGGAGTCAACCTTTTTGCTGGAAAGTTTTACTACTGCTACAACTCAACATCCGAAGAAATGTTCCACATCACTGAAGTCAACAATAAGAGTGAATGTTTAGAGCTCTCGGAGTATGATCCAAATGTGCGATGGATGAATATGAAGGTTAACTTTGATAACGTAGGCATGGGATACCTCTCCTTACTGCAAGTGGCAACATTTAAAGGATGGATGGAAATCATGTACAGTGCTGTTGATTCTCGTGAAGTGGAAATGCAGCCAGACTACGAGTCAAACCTCTACATGTACATTTACTTTGTCATCTTCATCATTTTTGGCTCTTTCTTCACCCTCAATCTATTCATCGGTGTCATTATTGACAATTTCAACCAACAAAAGGCAAAGTTAGGAGGAACCGATATCTTTATGACCGAGGAGCAGAAAAAATACTACAATGCCATGAAAAAACTTGGCGCCAAAAAACCACAGAAACCAATTCCAAGGCCAACGAACTGCTTCCAAGGTTTAGTATTCGACCTGGTCACCAAGCAGTTCTTTGACATCTTCATTATGGTGATGATCTGCCTGAACATGGTGACCATGATGGTGGAGACAGATGACCAAAGTGAAGAAATGGAATATATTCTGTTCTTTATTAACTTCGTCTTCATCATACTCTTCACCGGGGAGTGCATTCTCAAGATCATTGCCCTGCGATATCACTACTTTTCCATTGGGTGgaacatttttgattttgtggTGGTCATTCTTTCAATTTTAGGTCTTTTGCTGGCAGATCTCATCGAGAAGTACTTTGTGTCGCCAACGTTGTTTCGTGTTATCCGATTGGCCAGAATCGGCCGTGTCCTGCGGCTCATCCGCGGTGCCAAAGGAATCCGAACACTACTGTTCGCCctgatgatgtcacttcctgccCTCTTCAACATCGGCTTGCTTCTATTcttaatcatgtttattttctcCATATTTGGCATGTCCAACTTCGGCTATGTGAAAAAAGAAGGAGGCATCAATGATATGTTTAATTTCGAGACCTTCGGGAACAGTATCATGTGCTTGTTCATGATCACAACCTCCGCCGGCTGGGATGGACTGCTGTCACCTATACTCAACAGCCCGCCAGACTGCGACCCGGATGTGGAGAACCCTGGATCGCCCGTCCGAGGAAACTGCGGGAGCGCTGCCGTAGGCATTGTCTTCTTCTGCAGCTACATTGTCATGTCCTTCCTCGTCGTGGTCAACATGTACATAGCCATCATCCTGGAAAACTTTAACGTAGCGACAGAAGAAAGCAGCGACCCCTTGTGTGAGGATGATTTTGAGATGTTCTACGAAACCTGGGAGAAGTTCGACCCCACCGCCTCTCAGTTCATCACTTACAGTAAGCTGTCCGAATTCTGTGACACGCTCAAAGACCCCCTGAGGATCCCCAAACCAAACACCCTTAAGCTGATCACAATGGATCTTCCCATGGTCCCTGGTGATAAGATCCACTGTCTGGACCTTCTCCTGGCCCTCACTACAGAGGTGCTGGGAGATTCGGATGCCATGGATGGCATGAAAGCAACCATGGAGGAGAAGTTCATGGCCAACAATCCCTCAAAGGTTTCGTACGAGCCCATCACCAGCACTCTCAAACGAAAACAAGAAGAAGTGGCTGCTTCGACCATACAAAGAGCCTATCGGCAGCACGTCCTCAAACGCGGCCTCAGGCACGCCTCGTATATGTACAGAGAGAAGACGGACGCCAAGAGACGAGGTGAAGAGGCTCCAGAAAAAGTAGGGATGATCGCTAAGAAAATGAGTTATCTGTATGGAGATCAAGCCATTGAGGACGACAAACCTATGGGTTTCTCCTTCTCTCAGCGCGGGAATCCACAGTATGGGGTTAAGCGTCCCCCGGTGAGAGTTCAGAGCGACGTGGTCCTGCACTCTGCCCCCTTTCCCGTTCCTGACTCCTCAGCCACTGCGGAAAACTTGAGGGAGTCCATTGTGTAACAGGTTCAAGACACGCGCACCTTATCCTTTGGAAAGCCCAGCAATACTGAGACCCTTCAGGAGACTGTTCAGAGTTTGGCACACAACAGCCAGAATCAAAGAAATTTGTGGAGTTTGTATGGCGAAGATTCTTTGCAAATGGCAACGAGTTGTAATCAATATCATTGATGCAGTCAATGGCTCCTCTCAGTACTGCCCTTAAGAAGACGATCACCAACTGTTTGTCTAACGGCACTGGAAATGATTGGGCTCTTAGTGCAGATATCAATTTTCATGCACAGAACCTGACATGACAGCATTTATCAAATGATTACTAATCATTAAGAACTAATTTAGAGGAAGATCAGGAAGGACTTGTCATGATACCTGGCAAAGCCTATAATAAAtcctgaattacatttttttaaaatctaattctaTTGCATTTAACACCTTTTGAGATTTAGATTTACAGTTAATTTTACTGACTTTTCACTATGCGGTGTGAttagcattcaaaataaacacttttgcactaaataaaattaacactGGTAAAACGACCCAATTGTTAGCATTTAGCGAACCATATTAGTCTTAACagttcactgtaaaaaaacaaaaccaaaaaaaaaacataatattatgtatatttgaCTTTATATAGACTTTACTAAACATTTGGTTTTAATCCAAAGCAGAATCTCAAGTTGGCCCAAAGGCAAAAATATCAATCGCCATGCAAGTCAGACCATAAAACAGTCTTCCAAACAGTTAGCTACTCAGCTGAACATATTGTAAATATGAATTCTGTAATGTTTAAGATGCCTAATGAGCCTTTTTGGTATGTAGGGTGTACTTGCAAGTTGTTTATTGCAAGTATATAAAGTAGTCAGCGAAATCCTTGGCTTATGtaggtaatttttttattttcactttcagATATCATTTCTTATGAGCCAGATATGCAGTTGTGTCCTGAATGTCAGGTTGTTCTGCCCAGTTGTGTAGTGGTAATGGATTTGATGACAAAATATATAGAGAATACTCTGTAGATGAAACTATGCAAAGGATTGCTTAAACAGGGCATTGTATGTCAGAAAAACTACATGTATAAATGGATATGTGAGGGTCAGAAGTAACAAAACTAGTCAGATTTTATAAGCATTGTGTGGAAACATCTGTGGACACATTTCTCATGTCTGCTACAGTGAGTCAGCCTTAACAAGACTGACCTAATGTGACTCTTAGCATCcctattatgttttaatatccaGCATTTACAGTTgcattacataaatgttttgcCATTTTGGTGATCAACAATTTACAATTGTCTGTCTCTTACACAACCGATTTATACtttcaacagcatttattttttgacaggtAAAGAGTTTTTAGgaagttgggttttttttgcttttcatttcatgaaatctctcatttttattttttattaaattttattaaacattttatactttTGGGGATCCAATTGATGATTAAACATGCACTGGCTACTGATGCTAGCAATTTTCTTAAGCCCTCCCAGAAGTGTTGAAATGCTTAAACATgaagtttcttttatttatgccatttatttagcatttattatatttctttgttGAATGCAAACCAATAGCGAGAGAGGTAAGCAACCTATCCACAATTCAGTTTGTTCATGCAATaataagagataaaaataagaaagcaCAAGCATGCTCCAGAGGGAAATgcttttcagaaaaacattttcatttaatcatttttcattaaattgtacaagacaaattaataataattgttcattcaaatttatttcatgctgtACCATAATAAAAATCCTGCTGgtgatttcattttcaaattatatgATGACTCAGCAAATTGTGAAATGatagtttaataatttttactttttttatgttctgcTTAACATTAATACCACTGTTTAGTGCACTGAACGTACTGACACACGTCACAGTATCTGTCACTTGCTGAATGCATGTAATAGATCTtgtaacattctttttttttcaagtactTAAACATTTGTAAAGTGTATTGTATATTCTTTCTCAGTTTACATGAATgaaataaacttgttttttgAGCCTTGGGA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32959 lncRNA upstream 164884 21734138 ~ 21734422 (+) True G22201
TU32956 lncRNA upstream 262736 21636123 ~ 21636570 (+) True G22198
TU32955 lncRNA upstream 263227 21635744 ~ 21636079 (+) True G22197
TU32816 lncRNA upstream 405808 21345129 ~ 21493498 (+) True G22094
TU33101 lncRNA downstream 58913 21977618 ~ 21979015 (+) False wnk4b
XR_006250495.1 lncRNA downstream 117177 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA downstream 117212 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA downstream 117212 22035917 ~ 22064100 (+) False LOC122341843
TU33114 lncRNA downstream 350472 22269177 ~ 22287045 (+) False hdac5
XM_043235271.1 mRNA upstream 56434 21797020 ~ 21842872 (+) False kansl1b
XM_043235273.1 mRNA upstream 56434 21797240 ~ 21842872 (+) False kansl1b
XM_043235270.1 mRNA upstream 56434 21797246 ~ 21842872 (+) True kansl1b
XM_043235272.1 mRNA upstream 56434 21804382 ~ 21842872 (+) False kansl1b
XM_043235446.1 mRNA upstream 103903 21783456 ~ 21795403 (+) True cdc27
XM_043234701.1 mRNA downstream 5784 21924489 ~ 21926112 (+) True gh1
XM_043230602.1 mRNA downstream 8161 21926866 ~ 21929640 (+) True rdm1
XM_043234702.1 mRNA downstream 14539 21933244 ~ 21934233 (+) True ifnphi3
XM_043234000.1 mRNA downstream 32602 21951307 ~ 21974701 (+) False arhgap27l
XM_043233999.1 mRNA downstream 32603 21951308 ~ 21974701 (+) True arhgap27l
XR_006248723.1 other upstream 165179 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 485020 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1584975 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1711223 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1712108 20185567 ~ 20187198 (+) False eftud2
TU33098 other downstream 56547 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 57804 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 610284 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 627453 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 986672 22905377 ~ 22906695 (+) False LOC122341356

Expression Profile