RNA id: XM_043234636.1


Basic Information

Item Value
RNA id XM_043234636.1
length 1825
RNA type mRNA
GC content 0.46
exon number 2
gene id zgc:66443
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20457138 ~ 20460351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTAGAGTCCGCGAACAGCCGTTAAAACAAGAGGAGAACAAGCAAGTGCACAGAGTTGCTTTTATTCGCGTGTTTCGTCGGATTTGTTTTCGTTTTATACTTGGTGAAAATGTCAAGACTGGATAAGTTACATTCTAACCTGATGAAGCGAATGTCAATTGTCATTCGTGATATTTGGGTGGAGGTGGAAGCGACGGTGAAGGACTATCAAAAGGAAGCAGCCCAAACACGGTCAGAAAACGCGAGGCTGAAACAACAGCTCAAGGATGCGCTGAGCAGGAATCAGGCACAATTAAACGGAGTCCACTATGTCCCTCCTGATGAGGCCCCTCCCACAGAATTACCAGCATGTGGATATGAATCAGAAGACCCAGAAGATCAGCAAACGGAGGGCGATGCCCAGAGTCAGGATTCACCTAGTGAACTGAAGCCACGCATACTAGATGTCATTTCAATCTGTAAGACCGAGGCTGAGGATAGAGAGCTAGGGCATCAAAAAGATGTCTCATCTTCAGGTGAACAACGGCTCTTCCCTCAGTTTGACAGCTCGAGCGCGGACGAGGCATGGAACAGGAACGCGGCCACTGTGGCAGCACCCAGGGTCAAGATCGAGCCCGAGGACACCATTATCACAATAACCTCTTCAGTCACCACCACCCCTGCCCACACCGGTCCGTGTCAAGCCTCAGAACCCGCCCACCAGATGAGAACAGCCAGTGGCGCTTCAACCCTGTTGAGGAGGCCGCAGAAAAAGGAGCGCCTTCGCACTCGATACACCATGCCTAGGAGAGCATCCGCAAGAGATCACGATCACGATGAGCCGTATAAGTGTAACAAATGTGGAAGGCAGTTGAAGGACTTGGCGAAGCTGCAGCTGCACAAGAAATTGCATGAGAGATCCTTCATCTGCCACTGGTGCGGCAGGAACTTCTCAAAGTTCGACTACCTTCGAATGcatatgcgcacacacactggGGAACGGCCTTACCGCTGCAACTGGTGCTCAAAGACCTTCAGCCAGAGCGGGAACATGAGGAGACATGAGCGCACGTGCCGGAGTTTCAACGACGAATCGACATCGCACGGGCTGGAAGACCAACAGCTGCCCGACCAGTGACCGGTGCGGCTTCGTTGGCAGAACACTGCAGGCAGGCACACCTCGAGAACGAAACTTGAGAGCTGAAATTGGATTCTTTTTCATTAGATATATTGggatatttattgttttatcaaTTATATTAGAAAGCTTCCAATGTTATGGAAAATGCAGAGTGCCGATATGCTGTTTTACCAACATTTCTATGACCTTTTCAGGCTGTTTGTGTGGCCAGTAAGTCGAGAAAATATCACGAGAATGCACGTTTGACCCCTGAGGAAGATCACGTTGTGTCCATACCGAGTACCACAAGCTACCGTATTTCAAGACTGatgttttaacaatataaatactcCACAGAGAGCAGTATCTAGCcaatgaaatagtttttttagcCAGTGTGTAactatgaaaatgtatattcactATAGGAAAGAATGACATTCATATTaacttttgatctttttttttttttttttttttttggcctacACATTACTATTTGAAAGTTCCAGGTTTTTGGTGACTTACGAAAAGGATGAGTTGAATCTAAAGCAGTACATTAGGATACGAATCGGTGTGGTAGACCAAacagcaaaatgtatttaaacaaaaatattgtcagACGAAGACGATGTAATTTGAGAGGATGTATCTTATGACTGTCAAAAGAGGAACTTGTATGTAAAAAGAACCACTTGAATAAACTAGATTCAGTTTAATCTGAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32204 lncRNA upstream 48811 20407792 ~ 20408327 (+) True G21671
TU32202 lncRNA upstream 63237 20393561 ~ 20393901 (+) True G21669
TU32192 lncRNA upstream 111782 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA upstream 114842 20341072 ~ 20342296 (+) True G21661
TU32184 lncRNA upstream 142994 20313295 ~ 20314144 (+) True G21655
TU32232 lncRNA downstream 19980 20480331 ~ 20518038 (+) True G21687
XR_006249635.1 lncRNA downstream 260222 20720573 ~ 20726559 (+) True LOC122337901
TU32293 lncRNA downstream 263107 20723458 ~ 20724700 (+) True G21732
TU32294 lncRNA downstream 277626 20737977 ~ 20738225 (+) True G21733
TU32300 lncRNA downstream 310306 20770657 ~ 20770881 (+) True G21739
XM_043235996.1 mRNA upstream 5148 20444908 ~ 20451990 (+) True LOC122342178
XM_043235995.1 mRNA upstream 5148 20444908 ~ 20451990 (+) False LOC122342178
XM_043235236.1 mRNA upstream 13682 20430369 ~ 20443456 (+) True LOC122341693
XM_043235237.1 mRNA upstream 13682 20430369 ~ 20443456 (+) False LOC122341693
XM_043235297.1 mRNA upstream 70304 20382272 ~ 20386834 (+) True dhrs7b
XM_043234632.1 mRNA downstream 1024 20461375 ~ 20469846 (+) True zgc:66474
XM_043234634.1 mRNA downstream 1024 20461375 ~ 20469846 (+) False zgc:66474
XM_043234633.1 mRNA downstream 1024 20461375 ~ 20469846 (+) False zgc:66474
XM_043234635.1 mRNA downstream 10630 20470981 ~ 20473411 (+) True LOC122341263
XM_043228894.1 mRNA downstream 13834 20474185 ~ 20477233 (+) True si:dkey-93n13.2
unassigned_transcript_291 other upstream 142807 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 269055 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 269940 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 349302 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 389137 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 835351 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1177392 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1514901 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1516158 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 2068638 22528989 ~ 22530060 (+) True G22344

Expression Profile