RNA id: XM_043234637.1


Basic Information

Item Value
RNA id XM_043234637.1
length 2767
RNA type mRNA
GC content 0.37
exon number 8
gene id cpsf4
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15595214 ~ 15598712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACAAAAATAGCCTTAAAAtcaatgtaaaatatatcagttttcaaatcgATCCCTAGCAGGTTTAAGAATTATCTTGTAATAAAAGTGAATTAGGAAGAAAGTGAAAACTCAGAATTTTACCATCTTTAGAGGGAAGTCTAGGAATgaataattagaataaaaactaaaaatatacatgctaGTTTAGAGCATGTTAGTCAAATCTGAGTCATCAGAGCCAAATGAGAATATTAGTACAGAAAtggatttgaaataaaaattattactatGTTTTATCAAGTAAACGATTTAACACACTAGTGAGCGGTTTAAAAAATACTTGTAGAAACGCAAAAGGCTTTGTTAGTTgacaaaaattatttgatttttataacCGTTTTGAGTCATGGTATGCTGAAAATTATAgaatctatatatttttgttattctttaAGAACAGACAAAGAACAGGTTCTGTTGGGGAGTTACACCTATAAAATTTAAGCTTTATATAATTCagttatctctttttttttttacattttcgtAATCCCGGGTCAGCTAGTCGAGTCCGACACACAATAGTCAGCACTCTTCATAGCACCATTGTTAAGAACTGCATGGCGTTATTAACTGCAGCAGACCTTTTAATCGACTACCAACATACTGATCAAGACCAGCCATTCGTATATTTTTTTGTGCCGCCAAAGTTGCCATCTAACGACAGATCATTGAAACACGTTTTAATATTATCAAGACGAAATTACTCATGTcaacaaatacaattaaataacaaaCAGCATTCGCGCGTTGCTAGAAAATCGATGCTATTGTAATCGATTGCATGTCCTGGAGTTCAAGGGTCACTCGTGAGCGGCGCTGTGGAAGTAGACGGTTCTAAAATCAACTGTTTATTTACAAtgtttatctttatctttacCGATTTACTGATgagctacagtaaaaactgtttaCCCCGTTaataaatctgtgtttttttttttttgctattttctctttttacgTCTAGAATTAAACCTGACCAACGGCAAACTGATAAGTTGTTAGCCGTTAAGACTTTTAGTTTTCTGATTAGGTGTTATAAAGAGAAGGGTTTCAACGTCTggtaatagaaaaaatatacagGTTATACTACAAAAATGCAGGAATTAATCGCGTGTGTCGATCATATCAAGTTTGATTTAGAAATTGCTGTAGAACAACAATTAGGCGCTCAACCATTGCCATTTCCAGGAATGGATAaatctGGCGCAGCTGTATGCGAGTTCTTCATGAGAGCTGCCTGTATGAAAGGTGGAATGTGTCCTTTCAGACACATCAGCGGAGAAAAGACTGTGGTGTGCAAGCACTGGCTTAGAGGTTTATGCAAGAAGGGAGACCAGTGTGAATTTTTACACGAGTATGACATGACAAAGATGCCTGAATGTTATTTCTACTCTAAATTTGGGGAGTGCAGTAATAAAGAGTGTCCATTTTTGCACATTGACCCAGAATCTAAGATTAAAGATTGCCCATGGTATGATAGAGGGTTTTGTAAGCATGGTCCGGACTGCaggcacagacacacaagaAGAGTCATCTGTGTAAATTACCTGGTTGGCTTCTGCCCAGAGGGCAAGTCATGCAAATTTATGCACCCAAGATTTGAACTCCCTATGGGTGCTACTGAACAGCCACCATTACCACAGCAGGCCCAGTCTCAGCAAAAGTTTAATCTCCAGCAGCAAAACATGCAGCCTACAAACAGGTCCTCACAGTCACTCATCCAGTTAACCAAcaccaacatcaacaacaaccaGAGAATGCCAAATGCTGTTGGGATAGTGCACTCTAACAACAACATGGGTGGCCCCCGCGGTCCTCGTCCACTGGATCAAGTTACGTGTTACAAGTGTGGTGAGAAGGGCCACTACGCAAACAAATGCACCAAAGGACACCTGGCGTTTTTGAGCGGACAGTAAAGTTTTCTACAAAAAGGATCTCCAATAAATGTGACTATAACTTGCAAAGTGACATATTTCATTCCTGgtacattaaagaaatagttcacccaaaaaatttaaatttagctGAAAGCTGATTTGGCTTCAGGCTATCCAGAAATTaagtttcttcatcagaacagatttagagaaattttgCATAAcattgtttggactctcattttgaTGAGCAAATGATGTTAAACTTCTCAATCCGTCGACACAAACTCATATAAAtattggatggcctgagggcgagtacatttagattttttgtgggtgaaccatttctttaatttattacTGCAAAAGCTATAGTTGAGAGACAGAAGTGTGGCTCTACCTCACTGTCCATGTGCCAAGTGCATCTCAGTACACAGTGAAAAACGATCAATGACCACCGTTTtcatatagatttttattttactttcacatGAAACCTTATAGTCTTTTGTATTGGAGCAGCAAGCGTCTTGATTGCCTGAACTTTAAAGCGAAGCTGAAATTAGAGCGAAGTATATACTTTTAAGggaaaatgataaacaaaattACCCGAAATTAGAGAGGCAGAAAGGACATCACTTTGTAGTCCATTAAGATacttgtttatattaaatgaaagtgATTGTTGGGTTGTTGTACTTCTTACAAATAAAGATTTACTGGATTTGTAAAACCATCACCTTCGATATGTaatctttgtaaatgtagatAAGTACCACAATGTGGTTTTAGCTTGGAATAGTAGCTTTTGCCTGAATAAACACTTCTCTCATTTTCCTTA

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30422 lncRNA upstream 6405 15587212 ~ 15588809 (+) True G20415
TU30245 lncRNA upstream 318522 15276294 ~ 15276692 (+) False zgc:165423
TU30185 lncRNA upstream 456314 15129681 ~ 15138900 (+) True G20269
TU30054 lncRNA upstream 602177 14990229 ~ 14993037 (+) True G20188
TU30039 lncRNA upstream 605222 14972299 ~ 14989992 (+) True G20179
TU30435 lncRNA downstream 108224 15706936 ~ 15744171 (+) False fscn1a
XR_006248753.1 lncRNA downstream 116020 15714732 ~ 15725356 (+) True LOC122334397
TU30436 lncRNA downstream 117485 15716197 ~ 15727870 (+) False LOC122334397
XR_006248755.1 lncRNA downstream 121535 15720247 ~ 15721303 (+) True LOC122334400
TU30474 lncRNA downstream 263301 15862013 ~ 15864962 (+) True G20452
XM_043234641.1 mRNA upstream 141 15593873 ~ 15595073 (+) True bud31
XM_043233700.1 mRNA upstream 11813 15578600 ~ 15583401 (+) True smcr8a
XM_043232166.1 mRNA upstream 47339 15542122 ~ 15547875 (+) True syngr3a
XM_043232178.1 mRNA upstream 53280 15538905 ~ 15541934 (+) True gfer
XM_043233984.1 mRNA upstream 133503 15457127 ~ 15461711 (+) False ccdc97
XM_043228555.1 mRNA downstream 9673 15608385 ~ 15618064 (+) True slc29a4a
XM_043228563.1 mRNA downstream 9673 15608385 ~ 15618064 (+) False slc29a4a
XM_043228571.1 mRNA downstream 11790 15610502 ~ 15618064 (+) False slc29a4a
XM_043235658.1 mRNA downstream 40305 15639017 ~ 15697374 (+) True tnrc18
XM_043235355.1 mRNA downstream 138627 15737339 ~ 15744194 (+) True fscn1a
TU30209 other upstream 410341 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 425956 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 924534 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 928685 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 929292 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 581198 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 1091991 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 1091991 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 1099287 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1407202 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile