RNA id: XM_043234659.1


Basic Information

Item Value
RNA id XM_043234659.1
length 957
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC122341287
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8493695 ~ 8498279 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGGACGCCTGGGAGGAGAAGTGTCGCAGTTTCATGGACCTCACGCCTGCATCAGAAAAAggcaatgacacacacacacactctgagtcTCTGTTGAAACCCTTGCGTGTATCtcagcgtgtttgtgtgtgtgtgtgtgtgtgtgtgcagggatCATGTGGCTCTATGTGGGCATGGAGCTGCTGTACATCTCTCTGTTGAGCATCAGCTCTCTGCTCCTGCTGCTTCAGCTGTGTCTGTCCTCCTGCTCTCCTCCTCAGCAGCGCTGGGCTCATCTACTCAACGCCTTCGCTGCCGTCTGCACTGTACTGggagGGCTGGTTGGGATGGTCGCTCACATGATGTATATGCAGGTGTTTCAGGTGACCATCTCTCTGGGCCCTGAGGACTTCAAACCTCACAGTTACGGATACTCATGGGCCTTTTACGTGGCGTGGGTGGCCTTCACCTGCTGCATGTCGTCCGGCGTGTCCACGCTCAACAACTACACCAAGACGTTTCTGATGGTGGGACCCAAGCAAAGAAGTGTGTTCTACCCCTGCAGGAACTTCACCTTTCCTCCGCAGCCTCCCGCTCTCTCGCCTCTGTCTCCGTACTTCTCTACTGCTGCTCTGCCGCCTCCGCCTCCTCGCCCCGCCCCTCTGTCCCCGTGCCCCGCCCACCAGCTACAGAGCCCCGCCCTCGCTCTCTCTGTGCTGAGTCGCTATCTCCGTGCCCCTCCACCCTCCTTCGTACAACCCCGCCCCCTGTCTCCGAGCCCCGCCCCTGTCTCCCTCGCTCTCGGCTCTTCTTCTGTCTCCGCTCAGCTTTGCGTCTCAGTGTTCAGACGAGGAGTTCAGTCCTCTCTGATCATTCTTGCTCTGTCTTACTGTTTTTCTCTATTAAAGCACACGTGGCTTCAGTTCAGACGCCAAACTCAATCTGAACGGGGTTCAACAGGGTTGTTTTTCTTGTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26949 lncRNA upstream 3278 8474293 ~ 8490417 (+) True G18055
XR_006248186.1 lncRNA upstream 179205 8312389 ~ 8314490 (+) True LOC122331402
TU26881 lncRNA upstream 276478 8215252 ~ 8217217 (+) True G18010
TU26897 lncRNA upstream 276664 8216524 ~ 8217031 (+) True G18025
TU26887 lncRNA upstream 390278 8103050 ~ 8103417 (+) True G18016
TU26937 lncRNA downstream 15870 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA downstream 173382 8671661 ~ 8675886 (+) True G18092
TU27278 lncRNA downstream 382919 8881198 ~ 8882122 (+) True G18261
TU27283 lncRNA downstream 488774 8987053 ~ 8988610 (+) False LOC122341292
TU27303 lncRNA downstream 513414 9011693 ~ 9012178 (+) False pgls
XM_043225548.1 mRNA upstream 192935 8296132 ~ 8300760 (+) True wbp2nl
XM_043235764.1 mRNA upstream 264081 8227784 ~ 8229614 (+) True rrp7a
XM_043235766.1 mRNA upstream 266341 8219924 ~ 8227354 (+) True poldip3
XM_043235765.1 mRNA upstream 266500 8219924 ~ 8227195 (+) False poldip3
XM_043233971.1 mRNA upstream 286614 8201599 ~ 8207081 (+) True ndufa6
XM_043229399.1 mRNA downstream 46012 8544291 ~ 8551147 (+) True LOC122331854
XM_043235544.1 mRNA downstream 53807 8552086 ~ 8556310 (+) True LOC122341872
XM_043235902.1 mRNA downstream 59399 8557678 ~ 8563379 (+) True LOC122342110
XM_043225538.1 mRNA downstream 67121 8565400 ~ 8575713 (+) True ddx47
XM_043235571.1 mRNA downstream 118001 8616280 ~ 8660516 (+) True LOC122341890
TU26858 other upstream 340870 8150770 ~ 8152825 (+) False LOC122341282
TU26861 other upstream 340870 8150770 ~ 8152825 (+) False LOC122341282
TU26879 other upstream 433838 8056659 ~ 8059857 (+) True G18008
TU26834 other upstream 527501 7964749 ~ 7966194 (+) True G17988
TU26833 other upstream 531400 7960071 ~ 7962295 (+) False LOC122341279
TU26932 other downstream 15070 8513349 ~ 8516454 (+) False G18048
TU26936 other downstream 15070 8513349 ~ 8524734 (+) True G18048
TU26987 other downstream 46181 8544460 ~ 8551151 (+) False LOC122331854
TU27323 other downstream 686249 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 686249 9184528 ~ 9185581 (+) False LOC122341719

Expression Profile